Wall clock time and date at job start Sat Apr 11 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47028 * 2 1 4 4 C 1.46496 * 119.99947 * 270.00254 * 3 2 1 5 5 C 1.50705 * 109.47155 * 270.00014 * 4 3 2 6 6 H 1.08002 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00195 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00257 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99790 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47276 * 90.00097 * 9 7 5 11 11 H 1.48507 * 109.47021 * 210.00112 * 9 7 5 12 12 H 1.48497 * 109.47319 * 329.99799 * 9 7 5 13 13 C 1.34775 * 119.99917 * 90.00321 * 3 2 1 14 14 O 1.21278 * 119.99966 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00124 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47307 * 179.97438 * 15 13 3 17 17 C 1.46961 * 110.99861 * 169.99676 * 16 15 13 18 18 C 1.53049 * 109.36181 * 183.18775 * 17 16 15 19 19 N 1.46965 * 109.36659 * 301.60325 * 18 17 16 20 20 C 1.39677 * 110.99759 * 183.18867 * 19 18 17 21 21 C 1.38912 * 120.07048 * 179.97438 * 20 19 18 22 22 C 1.38099 * 119.92393 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.07607 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.14912 * 359.97438 * 23 22 21 25 25 C 1.38107 * 120.07582 * 0.02562 * 24 23 22 26 26 C 1.46955 * 110.87927 * 59.32047 * 19 18 17 27 27 C 1.46950 * 111.00121 * 293.80087 * 16 15 13 28 28 H 1.09004 * 109.47522 * 59.99661 * 1 2 3 29 29 H 1.08997 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47022 * 300.00219 * 1 2 3 31 31 H 1.08999 * 109.46684 * 240.00309 * 2 1 3 32 32 H 1.08996 * 109.47178 * 119.99801 * 2 1 3 33 33 H 1.09005 * 109.47375 * 30.00303 * 4 3 2 34 34 H 1.09001 * 109.47582 * 150.00156 * 4 3 2 35 35 H 0.96999 * 120.00190 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47297 * 59.99798 * 15 13 3 37 37 H 1.09001 * 109.47158 * 299.99878 * 15 13 3 38 38 H 1.08998 * 109.48396 * 63.22463 * 17 16 15 39 39 H 1.08992 * 109.48955 * 303.15338 * 17 16 15 40 40 H 1.09002 * 109.49137 * 181.63280 * 18 17 16 41 41 H 1.09007 * 109.49063 * 61.56507 * 18 17 16 42 42 H 1.08001 * 120.03609 * 0.02562 * 21 20 19 43 43 H 1.07995 * 119.96581 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.92755 * 179.72532 * 23 22 21 45 45 H 1.07997 * 119.96260 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.03841 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.48950 * 60.64738 * 26 19 18 48 48 H 1.09000 * 109.48705 * 180.71100 * 26 19 18 49 49 H 1.08998 * 109.48829 * 296.77675 * 27 16 15 50 50 H 1.09002 * 109.48906 * 56.83876 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 5.3912 2.1835 -3.2575 9 14 3.0133 3.4372 -3.9280 10 1 3.1171 4.8571 -3.5057 11 1 3.4063 3.3151 -5.3549 12 1 1.6135 2.9715 -3.7585 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 1.8570 1.6402 4.8672 18 6 2.1354 2.6401 5.9919 19 7 3.5736 2.9400 6.0324 20 6 3.8768 3.7955 7.0941 21 6 5.1878 4.2016 7.3082 22 6 5.4842 5.0470 8.3591 23 6 4.4778 5.4889 9.1982 24 6 3.1715 5.0866 8.9878 25 6 2.8681 4.2412 7.9387 26 6 4.0268 3.5059 4.7541 27 6 3.7483 2.5060 3.6293 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5815 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7175 2.5746 -4.0830 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0126 2.5299 38 1 2.3935 0.7121 5.0646 39 1 0.7871 1.4385 4.8165 40 1 1.8265 2.2107 6.9450 41 1 1.5775 3.5584 5.8085 42 1 5.9744 3.8565 6.6535 43 1 6.5033 5.3628 8.5265 44 1 4.7129 6.1465 10.0219 45 1 2.3879 5.4333 9.6452 46 1 1.8477 3.9278 7.7748 47 1 3.4903 4.4340 4.5566 48 1 5.0967 3.7077 4.8047 49 1 4.3062 1.5877 3.8127 50 1 4.0572 2.9353 2.6763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076426563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:11 Heat of formation + Delta-G solvation = 23.114142 kcal Electronic energy + Delta-G solvation = -28683.603233 eV Core-core repulsion = 24904.440949 eV Total energy + Delta-G solvation = -3779.162284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54051 -39.37094 -37.97770 -35.61096 -35.02007 -32.72994 -31.73319 -30.63602 -30.52847 -30.24394 -28.52159 -27.05130 -24.75230 -24.27608 -22.98961 -22.17577 -21.88858 -21.55928 -19.83840 -18.37521 -17.80478 -16.93387 -16.63491 -15.96318 -15.84462 -15.59551 -15.31295 -15.03064 -14.66553 -14.33699 -14.27220 -14.04204 -13.80126 -13.61611 -13.57488 -13.47130 -12.99449 -12.62394 -12.56833 -12.34772 -11.98486 -11.95607 -11.73379 -11.68167 -11.48424 -11.32684 -11.26175 -11.00931 -10.95868 -10.84025 -10.61316 -10.49663 -10.15048 -9.85647 -9.54606 -9.09824 -8.98743 -8.59322 -8.21871 -7.95969 -7.70905 -6.09346 -4.07969 1.23227 1.25165 3.28781 3.34615 3.34849 3.36972 3.44762 3.55127 3.77968 4.11784 4.39280 4.62383 4.73494 4.79815 4.88205 4.95965 5.03123 5.07617 5.18067 5.22295 5.25742 5.26673 5.32793 5.39854 5.40301 5.45328 5.51084 5.55334 5.56324 5.65461 5.71438 5.75107 5.84764 5.95643 6.00827 6.06534 6.13361 6.23297 6.26257 6.37976 6.39923 6.60194 6.69194 6.83588 6.90492 7.00393 7.11195 7.18465 7.36679 7.61150 8.26865 8.46721 8.92658 9.01792 9.51337 11.04027 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002628 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.194579 B =10652.641554 C =11746.690165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.524 6.524 15 C 0.039 3.961 16 N -0.522 5.522 17 C 0.056 3.944 18 C 0.056 3.944 19 N -0.493 5.493 20 C 0.118 3.882 21 C -0.142 4.142 22 C -0.095 4.095 23 C -0.153 4.153 24 C -0.095 4.095 25 C -0.173 4.173 26 C 0.066 3.934 27 C 0.050 3.950 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.038 0.962 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -1.189 22.064 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.400 6.400 15 C -0.092 4.092 16 N -0.247 5.247 17 C -0.073 4.073 18 C -0.072 4.072 19 N -0.208 5.208 20 C 0.020 3.980 21 C -0.162 4.162 22 C -0.114 4.114 23 C -0.172 4.172 24 C -0.114 4.114 25 C -0.194 4.194 26 C -0.059 4.059 27 C -0.077 4.077 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.056 0.944 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.479 -0.584 21.795 23.050 hybrid contribution -0.410 0.225 -0.622 0.779 sum -7.889 -0.359 21.173 22.598 Atomic orbital electron populations 1.22236 0.96763 1.01538 1.02272 1.21438 0.93404 0.83942 1.03027 1.47945 1.64460 1.13317 1.06986 1.19627 0.97220 0.93395 0.80067 1.21320 0.95346 1.32804 1.07103 0.90863 1.24855 0.94983 0.95816 0.97360 1.69895 1.15149 1.45010 1.23601 0.86852 0.81468 0.81638 0.79735 1.19910 1.21115 1.19093 1.20135 0.78572 0.87034 0.84704 1.90632 1.44754 1.17831 1.86775 1.22037 1.02370 0.94315 0.90520 1.61810 1.17270 1.43898 1.01704 1.22199 1.00596 0.95936 0.88542 1.22323 0.86776 0.99340 0.98711 1.59293 1.16958 1.41163 1.03429 1.19018 0.93833 0.91546 0.93586 1.20839 0.95032 1.00507 0.99810 1.21012 0.99228 0.96701 0.94461 1.21045 0.93190 1.02306 1.00648 1.20986 0.96563 0.96816 0.97001 1.21313 0.98705 1.00883 0.98517 1.22306 1.00855 0.96988 0.85784 1.22413 0.87066 0.98053 1.00214 0.92194 0.92011 0.92970 0.89730 0.91589 0.95350 0.94600 0.92578 0.92225 0.88436 0.93909 0.89919 0.89747 0.92569 0.85732 0.86011 0.86400 0.86257 0.85632 0.92575 0.89661 0.94421 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.59 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 10.09 7.37 -10.99 -0.08 10.00 16 14 O -0.52 -12.53 13.92 5.56 0.08 -12.45 16 15 C 0.04 0.56 4.00 -4.98 -0.02 0.54 16 16 N -0.52 -7.54 4.44 -235.92 -1.05 -8.59 16 17 C 0.06 0.61 5.61 -3.77 -0.02 0.59 16 18 C 0.06 0.59 4.29 -3.76 -0.02 0.58 16 19 N -0.49 -5.99 4.75 -170.95 -0.81 -6.80 16 20 C 0.12 1.38 5.64 -83.79 -0.47 0.91 16 21 C -0.14 -1.56 9.19 -39.38 -0.36 -1.92 16 22 C -0.10 -0.92 10.04 -39.62 -0.40 -1.31 16 23 C -0.15 -1.39 10.04 -39.55 -0.40 -1.79 16 24 C -0.09 -0.88 10.04 -39.61 -0.40 -1.28 16 25 C -0.17 -1.80 8.82 -39.38 -0.35 -2.15 16 26 C 0.07 0.89 5.38 -3.77 -0.02 0.87 16 27 C 0.05 0.77 5.26 -3.77 -0.02 0.75 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.60 7.22 -51.92 -0.37 0.22 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.06 0.81 7.38 -51.93 -0.38 0.42 16 37 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 41 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 42 H 0.12 1.30 7.19 -52.49 -0.38 0.92 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.13 5.81 -52.49 -0.31 0.83 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 1.07 6.82 -51.93 -0.35 0.71 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.11 2.09 5.85 -51.93 -0.30 1.79 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -33.80 389.14 -11.00 -44.80 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.10 Total: 1.82 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.66 Total: -2.41 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.52 Total: -54.50 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.80 -11.00 -44.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076426563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.914 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds