Wall clock time and date at job start Sat Apr 11 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47121 * 239.99429 * 2 1 3 5 5 N 1.46500 * 109.46783 * 65.00436 * 4 2 1 6 6 C 1.36941 * 120.00008 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99827 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99924 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00313 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47102 * 59.99363 * 10 8 6 12 12 H 1.48500 * 109.46991 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46951 * 299.99443 * 10 8 6 14 14 C 1.53008 * 109.46721 * 119.99650 * 2 1 3 15 15 N 1.46493 * 109.47620 * 294.99733 * 14 2 1 16 16 C 1.34768 * 120.00527 * 179.97438 * 15 14 2 17 17 O 1.21549 * 119.99661 * 0.02562 * 16 15 14 18 18 C 1.47865 * 120.00331 * 180.02562 * 16 15 14 19 19 C 1.39617 * 120.10870 * 359.97438 * 18 16 15 20 20 C 1.37982 * 120.00374 * 179.97438 * 19 18 16 21 21 C 1.38243 * 120.23023 * 0.02562 * 20 19 18 22 22 C 1.38988 * 120.21833 * 0.02562 * 21 20 19 23 23 N 1.39704 * 120.00475 * 179.97438 * 22 21 20 24 24 C 1.47909 * 111.00295 * 54.23397 * 23 22 21 25 25 C 1.53984 * 107.05980 * 214.15691 * 24 23 22 26 26 C 1.54601 * 105.14346 * 1.22817 * 25 24 23 27 27 C 1.48534 * 111.00102 * 296.84306 * 23 22 21 28 28 C 1.38684 * 119.99151 * 0.26918 * 22 21 20 29 29 H 1.08992 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46543 * 300.00395 * 1 2 3 31 31 H 1.09000 * 109.46901 * 59.99987 * 1 2 3 32 32 H 1.09001 * 109.47479 * 185.00377 * 4 2 1 33 33 H 1.09004 * 109.47420 * 305.00217 * 4 2 1 34 34 H 0.97001 * 120.00420 * 359.97438 * 5 4 2 35 35 H 0.97002 * 120.00283 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46541 * 174.99804 * 14 2 1 37 37 H 1.09004 * 109.46790 * 55.00265 * 14 2 1 38 38 H 0.97002 * 119.99506 * 0.02562 * 15 14 2 39 39 H 1.08002 * 119.99414 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.88120 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.89129 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.91437 * 94.80329 * 24 23 22 43 43 H 1.09000 * 109.91072 * 333.51591 * 24 23 22 44 44 H 1.09005 * 110.31185 * 120.14054 * 25 24 23 45 45 H 1.09003 * 110.31072 * 242.30812 * 25 24 23 46 46 H 1.08997 * 110.72488 * 140.31249 * 26 25 24 47 47 H 1.08999 * 110.71709 * 263.59894 * 26 25 24 48 48 H 1.09000 * 110.66810 * 41.27749 * 27 23 22 49 49 H 1.09004 * 110.66433 * 278.15506 * 27 23 22 50 50 H 1.07995 * 120.11204 * 179.75083 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.0011 -0.4210 -3.6855 7 1 2.5620 -1.3383 -3.7863 8 6 1.6344 0.2962 -4.8160 9 7 0.9512 1.4144 -4.6931 10 14 2.1106 -0.3258 -6.5119 11 1 1.5171 -1.6692 -6.7310 12 1 1.6031 0.6134 -7.5441 13 1 3.5897 -0.4162 -6.6086 14 6 2.0400 -0.7212 1.2494 15 7 1.6525 0.0354 2.4425 16 6 1.9955 -0.4135 3.6660 17 8 2.6268 -1.4459 3.7796 18 6 1.6039 0.3499 4.8703 19 6 0.8791 1.5364 4.7424 20 6 0.5144 2.2468 5.8676 21 6 0.8644 1.7884 7.1240 22 6 1.5867 0.6090 7.2622 23 7 1.9386 0.1502 8.5339 24 6 0.7480 0.0341 9.4038 25 6 1.1972 0.3867 10.8338 26 6 2.6979 0.7372 10.7108 27 6 2.8450 1.1103 9.2143 28 6 1.9634 -0.1091 6.1371 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7997 -1.2055 33 1 1.6054 -1.7199 -1.2950 34 1 1.1483 0.8590 -2.3518 35 1 0.6946 1.9154 -5.4831 36 1 3.1263 -0.7995 1.2057 37 1 1.6053 -1.7198 1.2953 38 1 1.1483 0.8591 2.3518 39 1 0.6041 1.8981 3.7626 40 1 -0.0466 3.1641 5.7665 41 1 0.5757 2.3486 8.0011 42 1 0.3656 -0.9862 9.3756 43 1 -0.0222 0.7313 9.0739 44 1 0.6376 1.2451 11.2055 45 1 1.0616 -0.4693 11.4949 46 1 2.9491 1.5863 11.3465 47 1 3.3168 -0.1259 10.9558 48 1 2.5200 2.1360 9.0397 49 1 3.8736 0.9697 8.8821 50 1 2.5281 -1.0236 6.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753636165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:38 Heat of formation + Delta-G solvation = -17.954220 kcal Electronic energy + Delta-G solvation = -27143.893461 eV Core-core repulsion = 23362.950319 eV Total energy + Delta-G solvation = -3780.943141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58606 -40.60646 -38.59356 -38.09086 -36.02443 -34.32724 -33.51233 -32.31769 -31.73841 -29.84898 -29.52406 -27.79970 -27.15665 -25.18209 -24.16790 -23.33442 -22.48184 -21.81045 -21.53575 -20.83580 -19.37708 -18.83571 -17.52952 -17.29505 -17.05655 -16.81856 -16.57632 -16.41823 -15.78373 -15.60551 -15.40123 -15.28962 -15.05415 -14.77788 -14.62312 -14.29103 -14.07788 -13.84423 -13.60872 -13.57184 -13.15969 -13.00021 -12.95374 -12.81316 -12.76894 -12.39385 -12.25755 -12.21562 -12.17608 -12.09628 -12.00205 -11.72906 -11.65893 -11.46484 -11.10626 -10.92985 -10.27856 -9.95724 -9.79675 -9.54823 -8.98749 -7.94877 -5.23036 -0.25274 0.27157 1.48196 1.50834 1.56926 1.75250 2.03175 2.57161 2.75439 2.86871 3.38690 3.61485 3.67149 3.70520 3.86954 3.89747 3.95510 4.02159 4.04416 4.08551 4.16193 4.30309 4.33471 4.39097 4.50234 4.53959 4.56812 4.69352 4.70892 4.77588 4.86668 4.92005 4.93735 4.94439 5.03487 5.03639 5.12493 5.13454 5.23723 5.26153 5.27240 5.31550 5.37378 5.39702 5.47417 5.50405 5.64825 5.77891 6.27593 6.33366 6.46717 7.12095 7.34756 8.09717 8.34551 9.28179 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.038901 B = 0.001658 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.601613 B =16885.063147 C =17234.395000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.081 0.919 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.250 4.250 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.137 3.863 15 N -0.706 5.706 16 C 0.554 3.446 17 O -0.582 6.582 18 C -0.140 4.140 19 C -0.085 4.085 20 C -0.109 4.109 21 C -0.121 4.121 22 C 0.068 3.932 23 N -0.504 5.504 24 C 0.033 3.967 25 C -0.127 4.127 26 C -0.120 4.120 27 C 0.035 3.965 28 C -0.057 4.057 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 4.667 34.632 35.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.358 5.358 16 C 0.343 3.657 17 O -0.463 6.463 18 C -0.143 4.143 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.026 4.026 23 N -0.226 5.226 24 C -0.093 4.093 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.091 4.091 28 C -0.077 4.077 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.929 3.300 34.504 34.715 hybrid contribution -0.363 0.744 -1.367 1.598 sum -2.291 4.044 33.137 33.462 Atomic orbital electron populations 1.21740 0.93774 1.02000 1.01864 1.21333 0.97246 1.00130 0.92562 0.90075 1.20720 0.96546 0.94156 0.85660 1.42474 1.66822 1.27814 1.01243 1.19603 1.28103 1.05383 0.85132 0.90931 1.25520 1.01621 0.97850 1.01429 1.69788 1.44953 1.17754 1.29181 0.85231 0.77865 0.77175 0.79596 1.20533 1.21946 1.20542 1.21193 0.99711 0.95100 0.82720 1.45789 1.57112 1.28067 1.04860 1.18625 0.78679 0.84412 0.84031 1.90757 1.42087 1.26192 1.87304 1.19783 1.04192 0.97956 0.92387 1.21627 0.95272 0.92500 1.00985 1.21350 0.99539 1.00803 0.91006 1.22067 0.97271 0.95387 0.99343 1.18946 0.98811 0.94057 0.90828 1.62337 1.14629 1.45622 1.00026 1.23081 0.91341 1.02138 0.92762 1.22418 0.96176 1.02683 0.95191 1.22498 0.96524 1.02388 0.94377 1.23423 0.97158 0.93988 0.94485 1.21030 0.97212 0.99005 0.90422 0.93007 0.90517 0.93638 0.96265 0.96101 0.79021 0.93952 0.91963 0.91646 0.74791 0.83149 0.81978 0.83593 0.90834 0.92300 0.89752 0.90231 0.88968 0.91050 0.92230 0.90558 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.94 71.98 0.64 -3.18 16 2 C -0.09 -2.80 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.16 6.21 5.65 86.38 0.49 6.69 16 5 N -0.74 -37.26 5.33 -343.45 -1.83 -39.09 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 9 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 10 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.14 3.76 5.06 86.38 0.44 4.20 16 15 N -0.71 -16.37 5.23 -465.96 -2.44 -18.81 16 16 C 0.55 15.21 7.77 86.79 0.67 15.88 16 17 O -0.58 -20.98 16.34 -3.87 -0.06 -21.05 16 18 C -0.14 -3.07 5.87 -20.10 -0.12 -3.19 16 19 C -0.09 -1.26 9.54 22.54 0.21 -1.05 16 20 C -0.11 -1.23 10.02 22.21 0.22 -1.01 16 21 C -0.12 -1.54 7.90 22.45 0.18 -1.37 16 22 C 0.07 1.22 4.86 38.17 0.19 1.41 16 23 N -0.50 -8.34 5.27 -682.90 -3.60 -11.94 16 24 C 0.03 0.40 6.48 86.44 0.56 0.96 16 25 C -0.13 -0.99 6.93 31.47 0.22 -0.77 16 26 C -0.12 -1.02 7.06 31.80 0.22 -0.80 16 27 C 0.04 0.44 6.43 86.65 0.56 0.99 16 28 C -0.06 -1.32 9.52 22.67 0.22 -1.10 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.60 7.18 -2.39 -0.02 1.58 16 31 H 0.04 1.53 7.18 -2.39 -0.02 1.51 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.38 19.77 6.85 -92.71 -0.63 19.14 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.41 7.08 5.68 -92.71 -0.53 6.55 16 39 H 0.15 1.49 6.40 -2.91 -0.02 1.47 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.15 1.20 7.02 -2.91 -0.02 1.18 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 0.62 6.29 -2.39 -0.02 0.61 16 44 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.06 0.62 7.02 -2.39 -0.02 0.60 16 49 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.12 3.22 7.65 -2.91 -0.02 3.20 16 Total: -1.00 -72.72 399.27 0.14 -72.58 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.22 Total: 30.31 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.98 Total: -2.05 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -7.59 Total: -128.04 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -72.72 0.14 -72.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753636165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.627 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds