Wall clock time and date at job start Sat Apr 11 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 N 1.46500 * 109.47047 * 120.00405 * 2 1 3 5 5 C 1.36935 * 120.00013 * 274.99583 * 4 2 1 6 6 H 1.08003 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00151 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00148 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46580 * 90.00173 * 9 7 5 11 11 H 1.48497 * 109.47076 * 209.99905 * 9 7 5 12 12 H 1.48504 * 109.47145 * 330.00372 * 9 7 5 13 13 C 1.53001 * 109.46833 * 239.99929 * 2 1 3 14 14 H 1.08998 * 110.88937 * 300.11365 * 13 2 1 15 15 C 1.55152 * 111.00619 * 176.18168 * 13 2 1 16 16 C 1.54320 * 102.94659 * 206.42563 * 15 13 2 17 17 N 1.47025 * 107.26929 * 22.19210 * 16 15 13 18 18 C 1.34776 * 125.64624 * 181.09390 * 17 16 15 19 19 O 1.21697 * 120.00023 * 179.97438 * 18 17 16 20 20 C 1.46679 * 120.00357 * 359.95905 * 18 17 16 21 21 C 1.38048 * 126.20758 * 179.68757 * 20 18 17 22 22 C 1.39244 * 106.97751 * 179.88395 * 21 20 18 23 23 C 1.35962 * 108.03938 * 0.44001 * 22 21 20 24 24 N 1.35114 * 108.76507 * 359.66500 * 23 22 21 25 25 H 0.96998 * 125.68767 * 180.10503 * 24 23 22 26 26 C 1.51018 * 123.85192 * 179.58822 * 23 22 21 27 27 C 1.53325 * 108.41012 * 343.32810 * 26 23 22 28 28 C 1.53105 * 109.52902 * 50.17690 * 27 26 23 29 29 C 1.50838 * 127.70653 * 180.23528 * 22 21 20 30 30 C 1.47422 * 108.70609 * 1.06211 * 17 16 15 31 31 H 1.08998 * 109.46940 * 54.91408 * 1 2 3 32 32 H 1.09000 * 109.46666 * 294.91517 * 1 2 3 33 33 H 1.08997 * 109.47251 * 174.91604 * 1 2 3 34 34 H 0.96999 * 119.99796 * 94.99331 * 4 2 1 35 35 H 0.97001 * 120.00191 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71873 * 324.79158 * 15 13 2 37 37 H 1.08999 * 110.71948 * 88.06012 * 15 13 2 38 38 H 1.09000 * 109.88349 * 262.77445 * 16 15 13 39 39 H 1.09002 * 110.01309 * 141.68183 * 16 15 13 40 40 H 1.08004 * 126.50650 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.67445 * 103.05560 * 26 23 22 42 42 H 1.08995 * 109.67852 * 223.59245 * 26 23 22 43 43 H 1.08997 * 109.45646 * 170.19666 * 27 26 23 44 44 H 1.09001 * 109.45576 * 290.15551 * 27 26 23 45 45 H 1.09006 * 109.47245 * 49.58937 * 28 27 26 46 46 H 1.08993 * 109.47022 * 169.59564 * 28 27 26 47 47 H 1.09007 * 109.68498 * 44.06557 * 29 22 21 48 48 H 1.09006 * 109.71565 * 283.53039 * 29 22 21 49 49 H 1.08991 * 110.37006 * 217.03438 * 30 17 16 50 50 H 1.09005 * 110.46086 * 94.74987 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5089 8 7 2.7377 -0.0055 4.6428 9 14 3.0566 -2.4744 3.4250 10 1 4.4892 -2.6165 3.0605 11 1 2.8176 -3.1044 4.7483 12 1 2.2162 -3.1431 2.3993 13 6 2.0400 -0.7213 -1.2493 14 1 1.6878 -1.7525 -1.2736 15 6 3.5879 -0.6591 -1.3345 16 6 3.8557 -0.7752 -2.8498 17 7 2.6288 -0.3560 -3.5432 18 6 2.4496 -0.3351 -4.8788 19 8 1.3868 0.0318 -5.3445 20 6 3.5355 -0.7544 -5.7713 21 6 3.4899 -0.7894 -7.1506 22 6 4.7315 -1.2443 -7.5870 23 6 5.5002 -1.4858 -6.4919 24 7 4.7843 -1.1905 -5.3847 25 1 5.0972 -1.2717 -4.4701 26 6 6.9179 -2.0019 -6.5564 27 6 7.1592 -2.5811 -7.9554 28 6 6.7192 -1.5650 -9.0128 29 6 5.1896 -1.4536 -9.0088 30 6 1.6270 0.0369 -2.5356 31 1 -0.3633 0.5907 -0.8409 32 1 -0.3632 0.4329 0.9320 33 1 -0.3633 -1.0236 -0.0911 34 1 2.2490 -1.6319 1.1525 35 1 3.0610 -0.4628 5.4348 36 1 3.9575 0.2912 -0.9492 37 1 4.0375 -1.4948 -0.7983 38 1 4.0922 -1.8078 -3.1065 39 1 4.6827 -0.1241 -3.1335 40 1 2.6510 -0.5147 -7.7729 41 1 7.6149 -1.1843 -6.3725 42 1 7.0594 -2.7809 -5.8073 43 1 8.2198 -2.7990 -8.0802 44 1 6.5837 -3.4994 -8.0724 45 1 7.1550 -0.5920 -8.7854 46 1 7.0571 -1.8938 -9.9955 47 1 4.8817 -0.6068 -9.6223 48 1 4.7538 -2.3711 -9.4043 49 1 0.6300 -0.2689 -2.8526 50 1 1.6574 1.1135 -2.3677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754805607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:55 Heat of formation + Delta-G solvation = 12.018040 kcal Electronic energy + Delta-G solvation = -28468.455870 eV Core-core repulsion = 24688.812423 eV Total energy + Delta-G solvation = -3779.643447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91498 -39.87595 -37.88198 -36.61921 -35.47858 -32.65703 -32.36420 -30.92637 -30.04068 -29.44844 -28.93923 -27.68218 -25.17646 -23.91669 -23.22347 -22.08054 -21.55483 -21.15201 -19.97984 -19.93387 -18.87088 -17.81677 -17.46698 -16.45531 -16.24970 -15.56724 -15.38113 -14.90364 -14.46530 -14.21610 -14.09418 -13.97448 -13.81621 -13.68879 -13.46433 -13.21446 -12.96931 -12.77260 -12.73207 -12.54959 -12.54717 -12.33872 -12.10624 -11.96748 -11.64946 -11.23288 -11.09140 -11.06645 -10.91883 -10.85441 -10.68081 -10.60734 -10.33136 -10.18367 -9.99631 -9.64024 -9.05153 -9.00227 -8.80406 -8.14118 -7.34103 -5.82366 -3.18299 1.29329 2.42934 2.70398 2.92477 3.27429 3.30556 3.33183 3.39909 4.27692 4.30813 4.45663 4.48722 4.50468 4.52851 4.67151 4.77876 4.80437 4.96468 4.99454 5.13998 5.15538 5.18638 5.21267 5.28915 5.37144 5.47673 5.49370 5.54774 5.58902 5.63749 5.70684 5.76251 5.77007 5.84938 5.89533 5.96227 5.99851 6.01291 6.08075 6.12966 6.27459 6.34700 6.43676 6.61472 6.72770 6.75929 6.96503 7.14335 7.35475 7.93447 8.02772 8.36442 9.14539 9.86892 10.06541 11.35941 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002505 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.667081 B =11174.845771 C =12346.058176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.087 3.913 17 N -0.618 5.618 18 C 0.603 3.397 19 O -0.532 6.532 20 C -0.051 4.051 21 C -0.098 4.098 22 C -0.176 4.176 23 C 0.046 3.954 24 N -0.534 5.534 25 H 0.416 0.584 26 C -0.055 4.055 27 C -0.112 4.112 28 C -0.120 4.120 29 C -0.046 4.046 30 C 0.117 3.883 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 -4.783 -26.557 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.036 4.036 17 N -0.352 5.352 18 C 0.393 3.607 19 O -0.409 6.409 20 C -0.164 4.164 21 C -0.125 4.125 22 C -0.182 4.182 23 C -0.072 4.072 24 N -0.134 5.134 25 H 0.259 0.741 26 C -0.093 4.093 27 C -0.150 4.150 28 C -0.157 4.157 29 C -0.084 4.084 30 C -0.006 4.006 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.664 -4.390 -26.491 28.215 hybrid contribution 0.471 -1.408 0.757 1.666 sum 9.135 -5.798 -25.734 27.916 Atomic orbital electron populations 1.22465 0.98607 1.00719 1.01108 1.20100 0.92094 0.95437 0.84280 0.92277 1.42738 1.79882 1.09282 1.07012 1.19045 1.36855 0.95532 0.85667 0.89176 1.24664 1.01522 0.97366 0.95566 1.69695 1.52583 1.35568 1.00261 0.86578 0.78292 0.86903 0.76886 1.21172 1.21799 1.20371 1.22738 0.94879 1.00417 0.94617 0.90048 1.22601 0.96757 1.04516 0.91558 1.22305 0.87536 0.98742 0.95060 1.48446 1.15908 1.65937 1.04907 1.16700 0.86278 0.77874 0.79838 1.90839 1.26315 1.48724 1.75004 1.20334 0.86626 1.15025 0.94418 1.20976 0.97835 1.02158 0.91507 1.19264 0.94456 1.09788 0.94726 1.20514 0.95394 1.05253 0.86037 1.42425 1.11459 1.50645 1.08908 0.74095 1.20324 0.89738 1.00299 0.98891 1.21513 1.01405 0.98959 0.93153 1.21598 0.95800 0.99565 0.98766 1.20050 0.94850 1.01688 0.91804 1.22312 0.92330 0.99572 0.86347 0.93945 0.91999 0.93651 0.80747 0.93049 0.89393 0.89614 0.91858 0.91629 0.83555 0.90167 0.90654 0.91121 0.91358 0.91691 0.91531 0.91078 0.91276 0.90043 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.23 37.16 0.34 -2.48 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.16 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -16.25 4.68 -53.43 -0.25 -16.50 16 5 C -0.24 -6.44 10.41 -15.06 -0.16 -6.59 16 6 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 9 Si 0.88 21.24 27.74 -169.99 -4.71 16.53 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 13 C -0.11 -1.50 2.63 -88.47 -0.23 -1.73 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -1.46 6.19 -24.90 -0.15 -1.61 16 16 C 0.09 0.92 5.11 -3.06 -0.02 0.90 16 17 N -0.62 -8.14 3.33 -172.05 -0.57 -8.71 16 18 C 0.60 8.94 7.82 -12.85 -0.10 8.84 16 19 O -0.53 -9.54 17.14 5.19 0.09 -9.46 16 20 C -0.05 -0.66 6.90 -81.84 -0.56 -1.22 16 21 C -0.10 -1.19 10.62 -39.28 -0.42 -1.61 16 22 C -0.18 -1.78 5.91 -105.00 -0.62 -2.40 16 23 C 0.05 0.43 7.02 -81.81 -0.57 -0.14 16 24 N -0.53 -5.36 5.60 -5.50 -0.03 -5.39 16 25 H 0.42 3.41 4.92 -40.82 -0.20 3.21 16 26 C -0.05 -0.34 6.30 -27.56 -0.17 -0.52 16 27 C -0.11 -0.61 5.89 -26.51 -0.16 -0.77 16 28 C -0.12 -0.69 5.90 -26.49 -0.16 -0.85 16 29 C -0.05 -0.34 6.27 -27.63 -0.17 -0.52 16 30 C 0.12 1.58 5.52 -2.52 -0.01 1.57 16 31 H 0.04 0.60 7.60 -51.93 -0.39 0.21 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 7.74 5.66 -40.82 -0.23 7.50 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.58 7.09 -51.93 -0.37 0.21 16 39 H 0.07 0.59 7.22 -51.93 -0.37 0.22 16 40 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 45 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 50 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -32.81 389.56 -10.58 -43.39 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.32 Total: 7.97 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.43 Total: -5.94 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.08 Total: -58.37 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.81 -10.58 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754805607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.411 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds