Wall clock time and date at job start Sat Apr 11 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 N 1.46500 * 109.47047 * 120.00405 * 2 1 3 5 5 C 1.36935 * 120.00013 * 274.99583 * 4 2 1 6 6 H 1.08003 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00151 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00148 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46580 * 90.00173 * 9 7 5 11 11 H 1.48497 * 109.47076 * 209.99905 * 9 7 5 12 12 H 1.48504 * 109.47145 * 330.00372 * 9 7 5 13 13 C 1.53001 * 109.46833 * 239.99929 * 2 1 3 14 14 H 1.08998 * 110.88937 * 300.11365 * 13 2 1 15 15 C 1.55152 * 111.00619 * 176.18168 * 13 2 1 16 16 C 1.54320 * 102.94659 * 206.42563 * 15 13 2 17 17 N 1.47025 * 107.26929 * 22.19210 * 16 15 13 18 18 C 1.34776 * 125.64624 * 181.09390 * 17 16 15 19 19 O 1.21697 * 120.00023 * 179.97438 * 18 17 16 20 20 C 1.46679 * 120.00357 * 359.95905 * 18 17 16 21 21 C 1.38048 * 126.20758 * 179.68757 * 20 18 17 22 22 C 1.39244 * 106.97751 * 179.88395 * 21 20 18 23 23 C 1.35962 * 108.03938 * 0.44001 * 22 21 20 24 24 N 1.35114 * 108.76507 * 359.66500 * 23 22 21 25 25 H 0.96998 * 125.68767 * 180.10503 * 24 23 22 26 26 C 1.51018 * 123.85192 * 179.58822 * 23 22 21 27 27 C 1.53325 * 108.41012 * 343.32810 * 26 23 22 28 28 C 1.53105 * 109.52902 * 50.17690 * 27 26 23 29 29 C 1.50838 * 127.70653 * 180.23528 * 22 21 20 30 30 C 1.47422 * 108.70609 * 1.06211 * 17 16 15 31 31 H 1.08998 * 109.46940 * 54.91408 * 1 2 3 32 32 H 1.09000 * 109.46666 * 294.91517 * 1 2 3 33 33 H 1.08997 * 109.47251 * 174.91604 * 1 2 3 34 34 H 0.96999 * 119.99796 * 94.99331 * 4 2 1 35 35 H 0.97001 * 120.00191 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71873 * 324.79158 * 15 13 2 37 37 H 1.08999 * 110.71948 * 88.06012 * 15 13 2 38 38 H 1.09000 * 109.88349 * 262.77445 * 16 15 13 39 39 H 1.09002 * 110.01309 * 141.68183 * 16 15 13 40 40 H 1.08004 * 126.50650 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.67445 * 103.05560 * 26 23 22 42 42 H 1.08995 * 109.67852 * 223.59245 * 26 23 22 43 43 H 1.08997 * 109.45646 * 170.19666 * 27 26 23 44 44 H 1.09001 * 109.45576 * 290.15551 * 27 26 23 45 45 H 1.09006 * 109.47245 * 49.58937 * 28 27 26 46 46 H 1.08993 * 109.47022 * 169.59564 * 28 27 26 47 47 H 1.09007 * 109.68498 * 44.06557 * 29 22 21 48 48 H 1.09006 * 109.71565 * 283.53039 * 29 22 21 49 49 H 1.08991 * 110.37006 * 217.03438 * 30 17 16 50 50 H 1.09005 * 110.46086 * 94.74987 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5089 8 7 2.7377 -0.0055 4.6428 9 14 3.0566 -2.4744 3.4250 10 1 4.4892 -2.6165 3.0605 11 1 2.8176 -3.1044 4.7483 12 1 2.2162 -3.1431 2.3993 13 6 2.0400 -0.7213 -1.2493 14 1 1.6878 -1.7525 -1.2736 15 6 3.5879 -0.6591 -1.3345 16 6 3.8557 -0.7752 -2.8498 17 7 2.6288 -0.3560 -3.5432 18 6 2.4496 -0.3351 -4.8788 19 8 1.3868 0.0318 -5.3445 20 6 3.5355 -0.7544 -5.7713 21 6 3.4899 -0.7894 -7.1506 22 6 4.7315 -1.2443 -7.5870 23 6 5.5002 -1.4858 -6.4919 24 7 4.7843 -1.1905 -5.3847 25 1 5.0972 -1.2717 -4.4701 26 6 6.9179 -2.0019 -6.5564 27 6 7.1592 -2.5811 -7.9554 28 6 6.7192 -1.5650 -9.0128 29 6 5.1896 -1.4536 -9.0088 30 6 1.6270 0.0369 -2.5356 31 1 -0.3633 0.5907 -0.8409 32 1 -0.3632 0.4329 0.9320 33 1 -0.3633 -1.0236 -0.0911 34 1 2.2490 -1.6319 1.1525 35 1 3.0610 -0.4628 5.4348 36 1 3.9575 0.2912 -0.9492 37 1 4.0375 -1.4948 -0.7983 38 1 4.0922 -1.8078 -3.1065 39 1 4.6827 -0.1241 -3.1335 40 1 2.6510 -0.5147 -7.7729 41 1 7.6149 -1.1843 -6.3725 42 1 7.0594 -2.7809 -5.8073 43 1 8.2198 -2.7990 -8.0802 44 1 6.5837 -3.4994 -8.0724 45 1 7.1550 -0.5920 -8.7854 46 1 7.0571 -1.8938 -9.9955 47 1 4.8817 -0.6068 -9.6223 48 1 4.7538 -2.3711 -9.4043 49 1 0.6300 -0.2689 -2.8526 50 1 1.6574 1.1135 -2.3677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754805607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:54 Heat of formation + Delta-G solvation = -7.596083 kcal Electronic energy + Delta-G solvation = -28469.306402 eV Core-core repulsion = 24688.812423 eV Total energy + Delta-G solvation = -3780.493979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.73079 -40.92527 -39.09788 -37.23651 -36.94921 -34.34368 -33.17255 -32.38302 -31.25027 -30.41651 -29.71967 -28.81305 -26.39257 -25.23090 -24.21679 -22.98681 -22.60739 -22.02520 -21.36375 -20.90599 -19.64692 -19.48707 -18.53845 -17.55591 -17.22731 -16.73669 -16.33794 -16.13670 -15.73424 -15.23106 -15.14736 -14.82093 -14.79595 -14.70513 -14.53376 -14.23905 -14.14510 -13.97425 -13.86084 -13.61154 -13.50657 -13.48425 -13.24462 -13.00632 -12.85188 -12.66799 -12.40335 -12.08140 -11.94162 -11.81727 -11.72454 -11.65754 -11.55201 -11.47413 -11.34088 -11.29904 -10.96464 -9.99502 -9.74784 -9.30448 -8.93168 -7.98720 -5.31955 0.35950 1.39201 1.43243 1.50590 1.63822 1.71852 2.10324 2.25713 2.51218 3.22032 3.32619 3.46334 3.57788 3.72582 3.76221 3.96280 3.99335 4.06869 4.09052 4.18352 4.22484 4.33001 4.39269 4.49888 4.52245 4.53820 4.64604 4.68845 4.70036 4.73346 4.78249 4.86712 4.94903 4.97926 5.02328 5.06748 5.10797 5.13330 5.20437 5.26430 5.31422 5.35158 5.37617 5.54070 5.54121 5.81183 5.83837 5.93202 6.24675 6.30147 6.45094 6.93766 7.11525 7.86768 8.06971 9.22961 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002505 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.667081 B =11174.845771 C =12346.058176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.048 0.952 4 N -0.745 5.745 5 C -0.221 4.221 6 H 0.055 0.945 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.304 1.304 12 H -0.252 1.252 13 C -0.096 4.096 14 H 0.088 0.912 15 C -0.115 4.115 16 C 0.091 3.909 17 N -0.617 5.617 18 C 0.599 3.401 19 O -0.576 6.576 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.190 4.190 23 C 0.060 3.940 24 N -0.526 5.526 25 H 0.425 0.575 26 C -0.055 4.055 27 C -0.112 4.112 28 C -0.118 4.118 29 C -0.048 4.048 30 C 0.120 3.880 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.563 -7.082 -28.744 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 H 0.067 0.933 4 N -0.388 5.388 5 C -0.352 4.352 6 H 0.073 0.927 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.231 1.231 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.107 0.893 15 C -0.152 4.152 16 C -0.032 4.032 17 N -0.350 5.350 18 C 0.391 3.609 19 O -0.457 6.457 20 C -0.190 4.190 21 C -0.139 4.139 22 C -0.196 4.196 23 C -0.060 4.060 24 N -0.127 5.127 25 H 0.269 0.731 26 C -0.093 4.093 27 C -0.149 4.149 28 C -0.155 4.155 29 C -0.086 4.086 30 C -0.003 4.003 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.199 0.801 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.156 0.844 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.005 -6.698 -28.719 31.476 hybrid contribution -0.273 -0.584 1.352 1.498 sum 10.732 -7.282 -27.366 30.284 Atomic orbital electron populations 1.22360 0.97817 1.01392 1.00692 1.20241 0.92519 0.95061 0.84281 0.93343 1.42670 1.79996 1.09456 1.06698 1.18962 1.34596 0.94270 0.87382 0.92742 1.25484 1.02653 1.02492 0.95152 1.69892 1.54928 1.37752 1.01213 0.85423 0.78827 0.80781 0.76790 1.19888 1.23130 1.17637 1.22517 0.96201 1.00111 0.92741 0.89346 1.22576 0.95254 1.04360 0.93059 1.22413 0.86941 1.00556 0.93267 1.48448 1.16590 1.65450 1.04505 1.16985 0.86261 0.77337 0.80278 1.90802 1.28111 1.50946 1.75802 1.20041 0.87397 1.17341 0.94203 1.21154 0.98686 1.02404 0.91672 1.19608 0.93770 1.09755 0.96460 1.21122 0.96441 1.03096 0.85353 1.42368 1.10520 1.50128 1.09644 0.73066 1.20522 0.87591 1.01191 1.00010 1.21545 1.02618 0.98461 0.92315 1.21602 0.94193 0.99786 0.99924 1.20132 0.96346 1.01856 0.90223 1.22198 0.92414 0.99426 0.86263 0.91505 0.94739 0.92935 0.80089 0.93546 0.90372 0.88851 0.89622 0.89635 0.84380 0.88779 0.89061 0.89096 0.91692 0.91858 0.90020 0.91101 0.90926 0.90627 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.23 71.98 0.66 -4.67 16 2 C 0.19 6.39 2.40 44.99 0.11 6.50 16 3 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 4 N -0.74 -31.70 4.68 -322.94 -1.51 -33.21 16 5 C -0.22 -11.95 10.41 84.03 0.87 -11.08 16 6 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 7 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.99 -62.05 13.97 21.65 0.30 -61.74 16 9 Si 0.95 43.44 27.74 68.60 1.90 45.34 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 13 C -0.10 -2.52 2.63 -9.40 -0.02 -2.55 16 14 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -2.59 6.19 31.78 0.20 -2.40 16 16 C 0.09 1.66 5.11 86.73 0.44 2.10 16 17 N -0.62 -15.40 3.33 -816.47 -2.72 -18.12 16 18 C 0.60 17.59 7.82 86.45 0.68 18.26 16 19 O -0.58 -21.15 17.14 -4.34 -0.07 -21.23 16 20 C -0.08 -1.91 6.90 40.36 0.28 -1.63 16 21 C -0.11 -2.70 10.62 22.47 0.24 -2.46 16 22 C -0.19 -3.57 5.91 -20.11 -0.12 -3.69 16 23 C 0.06 0.95 7.02 41.63 0.29 1.24 16 24 N -0.53 -9.29 5.60 -171.31 -0.96 -10.25 16 25 H 0.42 5.58 4.92 -92.71 -0.46 5.13 16 26 C -0.06 -0.48 6.30 30.06 0.19 -0.29 16 27 C -0.11 -0.80 5.89 30.74 0.18 -0.62 16 28 C -0.12 -1.02 5.90 30.75 0.18 -0.84 16 29 C -0.05 -0.63 6.27 30.01 0.19 -0.44 16 30 C 0.12 3.12 5.52 86.86 0.48 3.60 16 31 H 0.07 1.85 7.60 -2.39 -0.02 1.83 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.37 14.81 5.66 -92.71 -0.52 14.28 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 1.24 7.09 -2.39 -0.02 1.22 16 39 H 0.09 1.27 7.22 -2.39 -0.02 1.26 16 40 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 45 H 0.06 0.58 8.11 -2.38 -0.02 0.57 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 50 H 0.07 1.91 8.03 -2.38 -0.02 1.89 16 Total: -1.00 -73.58 389.56 2.16 -71.42 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.10 Total: 30.09 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.32 Total: -2.29 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -4.88 Total: -123.32 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.23 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Total: -73.58 2.16 -71.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754805607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.821 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds