Wall clock time and date at job start Sat Apr 11 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46998 * 2 1 4 4 C 1.50700 * 109.47035 * 240.00211 * 2 1 3 5 5 O 1.21294 * 119.99774 * 250.47864 * 4 2 1 6 6 N 1.34776 * 120.00448 * 70.47455 * 4 2 1 7 7 C 1.40149 * 120.00248 * 174.87573 * 6 4 2 8 8 C 1.38850 * 119.99349 * 215.52884 * 7 6 4 9 9 C 1.38060 * 120.00094 * 179.72321 * 8 7 6 10 10 C 1.38888 * 119.99531 * 0.52729 * 9 8 7 11 11 N 1.39901 * 120.00500 * 179.71946 * 10 9 8 12 12 C 1.48535 * 110.99381 * 116.96231 * 11 10 9 13 13 C 1.54933 * 103.22531 * 159.72622 * 12 11 10 14 14 C 1.54603 * 102.92165 * 322.58557 * 13 12 11 15 15 C 1.47897 * 111.00050 * 234.35868 * 11 10 9 16 16 C 1.38890 * 119.99289 * 359.74870 * 10 9 8 17 17 C 1.38063 * 119.99430 * 359.97438 * 16 10 9 18 18 N 1.46896 * 109.47141 * 120.00246 * 2 1 3 19 19 C 1.46904 * 110.99686 * 284.49418 * 18 2 1 20 20 C 1.46897 * 111.00543 * 48.44757 * 18 2 1 21 21 C 1.50699 * 109.47539 * 170.00001 * 20 18 2 22 22 H 1.08008 * 119.99478 * 359.72943 * 21 20 18 23 23 C 1.37871 * 120.00277 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00010 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00011 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47077 * 89.99700 * 25 23 21 27 27 H 1.48498 * 109.47105 * 210.00372 * 25 23 21 28 28 H 1.48506 * 109.46937 * 329.99758 * 25 23 21 29 29 H 1.08995 * 109.47243 * 60.00052 * 1 2 3 30 30 H 1.08999 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46941 * 299.99704 * 1 2 3 32 32 H 0.97002 * 119.99211 * 354.87452 * 6 4 2 33 33 H 1.07999 * 119.99880 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.00112 * 180.25724 * 9 8 7 35 35 H 1.09004 * 110.66740 * 278.15260 * 12 11 10 36 36 H 1.08996 * 110.67443 * 41.28885 * 12 11 10 37 37 H 1.09003 * 110.72900 * 204.23165 * 13 12 11 38 38 H 1.09005 * 110.72831 * 80.93881 * 13 12 11 39 39 H 1.09003 * 110.30520 * 263.04391 * 14 13 12 40 40 H 1.08994 * 110.31096 * 140.87353 * 14 13 12 41 41 H 1.08994 * 109.91959 * 333.50722 * 15 11 10 42 42 H 1.09004 * 109.91474 * 94.61066 * 15 11 10 43 43 H 1.07998 * 120.00007 * 180.02562 * 16 10 9 44 44 H 1.07996 * 119.99984 * 180.02562 * 17 16 10 45 45 H 1.09008 * 109.46878 * 189.52860 * 19 18 2 46 46 H 1.09000 * 109.47306 * 309.52510 * 19 18 2 47 47 H 1.08992 * 109.47162 * 69.52895 * 19 18 2 48 48 H 1.08995 * 109.46918 * 49.99860 * 20 18 2 49 49 H 1.08998 * 109.47004 * 289.99982 * 20 18 2 50 50 H 0.97001 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5654 -1.7952 -1.1293 6 7 1.8892 -0.1404 -2.4434 7 6 2.4505 -0.7488 -3.5743 8 6 2.9728 0.0331 -4.5959 9 6 3.5310 -0.5662 -5.7074 10 6 3.5601 -1.9511 -5.8086 11 7 4.1204 -2.5584 -6.9375 12 6 5.3066 -3.3733 -6.5699 13 6 5.4550 -4.3440 -7.7682 14 6 3.9883 -4.6657 -8.1363 15 6 3.1645 -3.4974 -7.5635 16 6 3.0325 -2.7330 -4.7891 17 6 2.4795 -2.1334 -3.6752 18 7 2.0197 -0.6925 1.1994 19 6 1.8715 0.1520 2.3922 20 6 1.3376 -1.9811 1.3787 21 6 2.0274 -2.7681 2.4631 22 1 2.8894 -2.3543 2.9654 23 6 1.5620 -4.0188 2.8096 24 7 2.1638 -4.7053 3.7562 25 14 0.0767 -4.7382 1.9344 26 1 0.5267 -5.5075 0.7465 27 1 -0.6546 -5.6398 2.8603 28 1 -0.8226 -3.6389 1.5007 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3976 0.6910 -2.5335 33 1 2.9469 1.1100 -4.5188 34 1 3.9410 0.0420 -6.5002 35 1 6.1910 -2.7435 -6.4733 36 1 5.1236 -3.9253 -5.6480 37 1 5.9847 -5.2484 -7.4688 38 1 5.9631 -3.8556 -8.5998 39 1 3.6808 -5.6057 -7.6782 40 1 3.8721 -4.7155 -9.2189 41 1 2.4644 -3.8685 -6.8152 42 1 2.6208 -2.9952 -8.3638 43 1 3.0554 -3.8098 -4.8675 44 1 2.0696 -2.7413 -2.8822 45 1 2.3913 -0.3102 3.2315 46 1 2.2996 1.1352 2.1968 47 1 0.8139 0.2577 2.6335 48 1 1.3707 -2.5427 0.4452 49 1 0.2994 -1.8065 1.6610 50 1 1.8366 -5.5854 3.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177190889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:42 Heat of formation + Delta-G solvation = 23.153717 kcal Electronic energy + Delta-G solvation = -28615.445212 eV Core-core repulsion = 24836.284645 eV Total energy + Delta-G solvation = -3779.160567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70996 -39.82063 -37.97350 -36.53136 -34.59917 -32.62792 -32.03927 -30.99711 -30.42489 -29.13101 -27.88818 -27.66256 -25.34896 -23.84430 -23.19950 -22.58041 -21.21911 -21.03441 -20.44804 -19.32749 -17.83713 -17.12126 -16.90107 -16.73744 -16.23448 -15.29767 -14.76336 -14.61306 -14.47257 -14.34275 -14.22305 -13.97954 -13.63618 -13.55779 -13.41573 -13.27783 -13.02642 -12.49512 -12.42975 -12.41477 -12.12963 -12.02272 -11.93384 -11.65122 -11.48114 -11.40039 -11.33132 -11.15110 -11.07567 -10.86656 -10.44970 -10.34949 -10.04664 -9.85206 -9.50525 -9.08201 -8.91939 -8.73603 -8.47075 -7.98434 -7.40391 -5.97721 -3.92728 1.15220 1.39816 2.85384 3.07508 3.33066 3.39093 3.40261 3.70893 3.71429 4.38717 4.48273 4.52912 4.67848 4.70635 4.77275 4.92475 4.99478 5.04382 5.22760 5.23096 5.25568 5.27439 5.36164 5.36291 5.48273 5.52376 5.54417 5.60784 5.68700 5.70495 5.76972 5.80141 5.86055 5.90365 5.95612 6.05230 6.16773 6.27815 6.35519 6.48314 6.49297 6.53971 6.65311 6.84650 6.91326 7.03351 7.30350 7.44047 7.69440 7.87114 8.02262 8.42383 8.72159 9.10649 9.64580 11.15908 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002989 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.131488 B = 9364.442470 C =10726.267687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.097 0.903 4 C 0.514 3.486 5 O -0.478 6.478 6 N -0.684 5.684 7 C 0.155 3.845 8 C -0.144 4.144 9 C -0.077 4.077 10 C 0.055 3.945 11 N -0.481 5.481 12 C 0.036 3.964 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.035 3.965 16 C -0.129 4.129 17 C -0.110 4.110 18 N -0.511 5.511 19 C 0.039 3.961 20 C 0.158 3.842 21 C -0.500 4.500 22 H 0.079 0.921 23 C 0.068 3.932 24 N -0.903 5.903 25 Si 0.873 3.127 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.407 0.593 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.018 0.982 48 H 0.042 0.958 49 H -0.012 1.012 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 9.624 -23.226 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.348 6.348 6 N -0.332 5.332 7 C 0.061 3.939 8 C -0.165 4.165 9 C -0.096 4.096 10 C -0.040 4.040 11 N -0.202 5.202 12 C -0.090 4.090 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.091 4.091 16 C -0.149 4.149 17 C -0.131 4.131 18 N -0.235 5.235 19 C -0.109 4.109 20 C 0.032 3.968 21 C -0.538 4.538 22 H 0.097 0.903 23 C -0.133 4.133 24 N -0.543 5.543 25 Si 0.701 3.299 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.195 1.195 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.158 0.842 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.037 0.963 48 H 0.060 0.940 49 H 0.005 0.995 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.803 8.965 -23.361 25.035 hybrid contribution -2.126 -0.556 0.288 2.217 sum -1.324 8.409 -23.073 24.593 Atomic orbital electron populations 1.22426 0.95766 1.03618 1.02313 1.21610 0.93845 0.98112 0.91230 0.88486 1.21001 0.78794 0.86457 0.83689 1.90765 1.39277 1.19467 1.85262 1.43740 1.55879 1.27795 1.05738 1.17822 0.96653 0.92096 0.87365 1.20833 1.01314 0.99553 0.94826 1.20681 0.98552 0.93079 0.97316 1.18927 1.00435 0.93510 0.91113 1.62475 1.05890 1.28575 1.23260 1.23365 0.93708 0.94662 0.97247 1.22494 0.96536 0.98963 0.98168 1.22417 0.95267 0.97912 1.01427 1.22999 0.94755 0.92318 0.99050 1.21488 0.99540 0.99913 0.93980 1.21248 1.00247 0.93626 0.98006 1.61922 1.57061 1.04430 1.00052 1.22269 0.99064 0.95543 0.94028 1.20364 0.91663 0.86239 0.98517 1.20994 1.14599 1.00777 1.17435 0.90292 1.24847 0.96718 0.96738 0.94990 1.69891 1.41016 1.12731 1.30670 0.86897 0.83682 0.79417 0.79938 1.20177 1.21305 1.19501 0.92474 0.91210 0.91185 0.75802 0.85492 0.85250 0.89739 0.92931 0.90840 0.90657 0.91351 0.90904 0.92972 0.90198 0.86169 0.84160 0.89965 0.93399 0.96342 0.94038 0.99465 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.34 37.16 0.31 -2.24 16 2 C 0.07 1.04 2.70 -68.86 -0.19 0.86 16 3 H 0.10 1.24 7.82 -51.93 -0.41 0.83 16 4 C 0.51 8.80 6.74 -10.99 -0.07 8.72 16 5 O -0.48 -10.57 11.88 5.55 0.07 -10.51 16 6 N -0.68 -8.76 5.34 -9.82 -0.05 -8.81 16 7 C 0.16 2.11 6.29 -83.60 -0.53 1.58 16 8 C -0.14 -1.60 9.96 -39.42 -0.39 -1.99 16 9 C -0.08 -0.86 9.96 -39.41 -0.39 -1.25 16 10 C 0.05 0.66 4.87 -83.69 -0.41 0.26 16 11 N -0.48 -5.17 5.28 -167.11 -0.88 -6.05 16 12 C 0.04 0.36 6.43 -1.90 -0.01 0.35 16 13 C -0.12 -0.95 7.06 -24.87 -0.18 -1.13 16 14 C -0.13 -1.00 6.93 -25.37 -0.18 -1.18 16 15 C 0.04 0.33 6.49 -2.75 -0.02 0.31 16 16 C -0.13 -1.73 7.90 -39.40 -0.31 -2.04 16 17 C -0.11 -1.70 8.69 -39.42 -0.34 -2.04 16 18 N -0.51 -10.75 4.42 -237.73 -1.05 -11.80 16 19 C 0.04 0.72 9.02 60.07 0.54 1.26 16 20 C 0.16 3.94 2.31 -4.98 -0.01 3.93 16 21 C -0.50 -14.73 9.14 -34.44 -0.31 -15.04 16 22 H 0.08 2.52 7.35 -52.48 -0.39 2.14 16 23 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 24 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 25 Si 0.87 22.45 27.47 -169.99 -4.67 17.78 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.18 6.53 -51.93 -0.34 0.84 16 31 H 0.07 0.94 7.13 -51.93 -0.37 0.57 16 32 H 0.41 3.60 8.83 -40.82 -0.36 3.24 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.57 7.02 -51.93 -0.36 0.21 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.12 1.53 7.03 -52.49 -0.37 1.16 16 44 H 0.14 2.52 6.26 -52.49 -0.33 2.19 16 45 H 0.08 1.70 7.03 -51.92 -0.37 1.33 16 46 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 47 H 0.02 0.32 7.17 -51.93 -0.37 -0.05 16 48 H 0.04 1.10 5.39 -51.93 -0.28 0.82 16 49 H -0.01 -0.30 5.85 -51.93 -0.30 -0.60 16 50 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -35.12 386.42 -10.53 -45.65 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.95 Total: 3.39 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.59 Total: -7.70 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -1.21 Total: -54.43 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.12 -10.53 -45.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.806 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds