Wall clock time and date at job start Sat Apr 11 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46980 * 2 1 4 4 C 1.46496 * 120.00214 * 90.00037 * 3 2 1 5 5 C 1.39039 * 119.99451 * 269.99845 * 3 2 1 6 6 C 1.39220 * 119.93727 * 359.72763 * 5 3 2 7 7 C 1.37611 * 120.06880 * 179.72222 * 6 5 3 8 8 C 1.39798 * 119.92825 * 0.55098 * 7 6 5 9 9 C 1.47522 * 120.06413 * 179.70029 * 8 7 6 10 10 O 1.21592 * 119.99850 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99961 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99720 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47222 * 173.44404 * 12 11 9 14 14 H 1.08993 * 109.87275 * 56.71602 * 13 12 11 15 15 C 1.54317 * 109.88355 * 177.73079 * 13 12 11 16 16 C 1.55166 * 102.94210 * 141.60890 * 15 13 12 17 17 C 1.54913 * 101.57921 * 324.49914 * 16 15 13 18 18 N 1.47020 * 109.88113 * 295.69765 * 13 12 11 19 19 C 1.36938 * 125.64486 * 61.60799 * 18 13 12 20 20 H 1.07997 * 120.00199 * 324.74415 * 19 18 13 21 21 C 1.38810 * 119.99996 * 144.74680 * 19 18 13 22 22 N 1.31625 * 120.00487 * 161.93191 * 21 19 18 23 23 Si 1.86805 * 119.99978 * 341.93528 * 21 19 18 24 24 H 1.48491 * 109.47244 * 95.17321 * 23 21 19 25 25 H 1.48500 * 109.46811 * 215.17547 * 23 21 19 26 26 H 1.48499 * 109.46815 * 335.17197 * 23 21 19 27 27 C 1.39796 * 119.86392 * 359.72322 * 8 7 6 28 28 C 1.37598 * 119.93111 * 0.02562 * 27 8 7 29 29 H 1.08997 * 109.47152 * 300.00004 * 1 2 3 30 30 H 1.09005 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46795 * 60.00479 * 1 2 3 32 32 H 1.08998 * 109.47511 * 119.99727 * 2 1 3 33 33 H 1.08997 * 109.47152 * 239.99996 * 2 1 3 34 34 H 1.08999 * 109.47134 * 89.99479 * 4 3 2 35 35 H 1.08993 * 109.47201 * 210.00294 * 4 3 2 36 36 H 1.09008 * 109.47028 * 330.00214 * 4 3 2 37 37 H 1.07998 * 119.96256 * 359.97438 * 6 5 3 38 38 H 1.07999 * 120.03373 * 180.24836 * 7 6 5 39 39 H 0.96991 * 120.00175 * 359.97438 * 11 9 8 40 40 H 1.09006 * 109.47027 * 293.44364 * 12 11 9 41 41 H 1.08997 * 109.47450 * 53.44167 * 12 11 9 42 42 H 1.09001 * 110.72383 * 259.96957 * 15 13 12 43 43 H 1.09005 * 110.72586 * 23.07128 * 15 13 12 44 44 H 1.09003 * 110.99791 * 82.57190 * 16 15 13 45 45 H 1.08996 * 111.00101 * 206.42060 * 16 15 13 46 46 H 1.08995 * 110.36231 * 155.84566 * 17 16 15 47 47 H 1.08995 * 110.36425 * 278.05516 * 17 16 15 48 48 H 0.96991 * 120.00548 * 180.02562 * 22 21 19 49 49 H 1.08006 * 120.03119 * 179.97438 * 27 8 7 50 50 H 1.08001 * 119.96733 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 2.2500 2.0366 -1.2042 6 6 2.0230 1.3770 -2.4090 7 6 2.2460 2.0249 -3.6024 8 6 2.7120 3.3430 -3.6041 9 6 2.9583 4.0381 -4.8817 10 8 3.3640 5.1844 -4.8817 11 7 2.7336 3.4027 -6.0489 12 6 2.9777 4.0933 -7.3176 13 6 2.8043 3.1088 -8.4758 14 1 1.8095 2.6650 -8.4390 15 6 3.0035 3.8397 -9.8202 16 6 3.7681 2.7939 -10.6743 17 6 4.6643 2.1165 -9.6076 18 7 3.8256 2.0545 -8.3930 19 6 3.9738 1.1663 -7.3613 20 1 3.7733 1.4783 -6.3470 21 6 4.3818 -0.1352 -7.6192 22 7 4.8643 -0.8788 -6.6461 23 14 4.2461 -0.8316 -9.3473 24 1 5.5432 -0.6661 -10.0508 25 1 3.9032 -2.2746 -9.2739 26 1 3.1838 -0.1075 -10.0906 27 6 2.9444 4.0006 -2.3925 28 6 2.7146 3.3491 -1.2026 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.2919 1.9006 1.5834 35 1 2.0955 3.1410 1.1383 36 1 1.5817 1.6877 2.0284 37 1 1.6676 0.3572 -2.4070 38 1 2.0658 1.5141 -4.5367 39 1 2.4103 2.4883 -6.0488 40 1 2.2674 4.9128 -7.4278 41 1 3.9932 4.4893 -7.3263 42 1 2.0423 4.0802 -10.2746 43 1 3.6007 4.7414 -9.6843 44 1 3.0801 2.0754 -11.1201 45 1 4.3720 3.2811 -11.4399 46 1 4.9413 1.1121 -9.9275 47 1 5.5565 2.7157 -9.4259 48 1 5.1497 -1.7881 -6.8264 49 1 3.3048 5.0187 -2.3907 50 1 2.8937 3.8567 -0.2663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028348006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:31 Heat of formation + Delta-G solvation = 30.467408 kcal Electronic energy + Delta-G solvation = -28878.119936 eV Core-core repulsion = 25099.276514 eV Total energy + Delta-G solvation = -3778.843422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.90739 -38.83723 -37.77275 -36.15526 -33.93645 -32.64724 -31.93582 -30.59367 -30.10030 -29.95656 -28.80141 -26.37293 -25.02827 -24.08220 -23.15215 -22.02871 -21.24991 -20.64495 -19.74823 -19.33627 -17.98960 -17.03882 -16.22716 -16.19636 -15.97877 -15.19128 -14.80680 -14.75367 -14.66810 -14.37894 -14.00788 -13.59190 -13.50831 -13.31523 -13.12370 -13.02102 -12.69205 -12.53254 -12.39734 -12.28523 -12.12772 -12.03542 -11.87509 -11.80031 -11.32624 -11.26200 -11.22209 -10.88243 -10.68945 -10.54937 -10.44733 -10.16979 -9.84751 -9.73163 -9.54411 -9.26216 -8.73721 -8.59567 -8.27335 -7.22213 -6.84529 -6.01841 -3.45689 1.40549 1.71508 3.02218 3.30223 3.42649 3.43952 3.49028 3.92621 4.35583 4.49917 4.72201 4.82312 4.92942 4.99361 5.12652 5.13583 5.16158 5.25966 5.32924 5.35323 5.40154 5.46506 5.47201 5.54350 5.56744 5.64319 5.66108 5.75247 5.84739 5.89430 5.98584 6.01734 6.13979 6.15144 6.26515 6.29168 6.36168 6.37631 6.42074 6.58604 6.61792 6.79551 6.86285 6.90161 6.95265 7.19162 7.22011 7.50748 7.85740 8.26768 8.30608 8.78122 8.92591 9.62517 10.22069 11.12142 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003382 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.368354 B = 8276.964496 C = 9778.318872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.629 5.629 4 C 0.092 3.908 5 C 0.235 3.765 6 C -0.202 4.202 7 C -0.024 4.024 8 C -0.189 4.189 9 C 0.560 3.440 10 O -0.567 6.567 11 N -0.706 5.706 12 C 0.117 3.883 13 C 0.143 3.857 14 H 0.047 0.953 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.118 3.882 18 N -0.601 5.601 19 C -0.256 4.256 20 H 0.092 0.908 21 C 0.035 3.965 22 N -0.900 5.900 23 Si 0.888 3.112 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.268 1.268 27 C -0.014 4.014 28 C -0.214 4.214 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.410 0.590 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.040 0.960 47 H 0.031 0.969 48 H 0.264 0.736 49 H 0.130 0.870 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.634 4.190 10.003 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.340 5.340 4 C -0.051 4.051 5 C 0.132 3.868 6 C -0.224 4.224 7 C -0.043 4.043 8 C -0.194 4.194 9 C 0.348 3.652 10 O -0.449 6.449 11 N -0.358 5.358 12 C -0.009 4.009 13 C 0.035 3.965 14 H 0.065 0.935 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.007 4.007 18 N -0.327 5.327 19 C -0.383 4.383 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.541 5.541 23 Si 0.719 3.281 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.193 1.193 27 C -0.033 4.033 28 C -0.237 4.237 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.249 0.751 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.313 4.644 10.287 14.017 hybrid contribution 0.023 -1.127 -0.890 1.437 sum -8.290 3.517 9.397 13.015 Atomic orbital electron populations 1.22226 0.96357 1.02018 1.02476 1.21451 0.94031 0.82286 1.03050 1.46376 1.71115 1.13287 1.03189 1.21630 1.00524 0.97883 0.85067 1.17978 0.91853 0.91288 0.85702 1.20589 1.10403 1.00761 0.90684 1.21193 0.92289 0.92728 0.98133 1.19727 1.10412 0.95731 0.93552 1.18160 0.77318 0.85758 0.83963 1.90681 1.47923 1.18199 1.88048 1.46091 1.66527 1.18071 1.05159 1.21896 1.00716 0.94827 0.83435 1.21282 0.93723 0.89599 0.91850 0.93495 1.22484 1.00153 0.97999 0.95295 1.22773 0.99048 0.98100 0.97481 1.21930 0.93594 0.97786 0.87351 1.44748 1.30589 1.36417 1.20992 1.18693 1.44308 0.88554 0.86774 0.89075 1.25411 0.98356 0.95910 0.96899 1.69821 1.42466 1.09666 1.32173 0.86724 0.78184 0.77021 0.86156 1.21652 1.23271 1.19346 1.20919 0.92843 0.99189 0.90397 1.20537 1.10603 0.94151 0.98361 0.92779 0.91729 0.92012 0.90927 0.90027 0.93331 0.91208 0.91763 0.85568 0.85125 0.75071 0.93011 0.91709 0.91446 0.91239 0.91613 0.91568 0.94179 0.95070 0.92663 0.85171 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.11 1.06 5.87 -4.04 -0.02 1.04 16 3 N -0.63 -6.87 2.99 -179.62 -0.54 -7.41 16 4 C 0.09 0.75 10.17 59.84 0.61 1.36 16 5 C 0.23 3.22 6.55 -83.86 -0.55 2.67 16 6 C -0.20 -3.02 9.18 -39.45 -0.36 -3.38 16 7 C -0.02 -0.40 9.53 -39.23 -0.37 -0.78 16 8 C -0.19 -3.41 5.88 -104.95 -0.62 -4.03 16 9 C 0.56 11.40 7.76 -12.47 -0.10 11.30 16 10 O -0.57 -12.86 16.32 5.28 0.09 -12.78 16 11 N -0.71 -13.90 4.29 -61.35 -0.26 -14.16 16 12 C 0.12 2.21 5.15 -4.04 -0.02 2.19 16 13 C 0.14 2.69 3.29 -66.96 -0.22 2.47 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 15 C -0.12 -1.87 6.48 -24.89 -0.16 -2.03 16 16 C -0.14 -2.27 7.09 -24.58 -0.17 -2.44 16 17 C 0.12 2.49 6.23 -2.35 -0.01 2.48 16 18 N -0.60 -13.75 2.69 -162.33 -0.44 -14.18 16 19 C -0.26 -6.72 9.52 -15.06 -0.14 -6.87 16 20 H 0.09 2.47 5.51 -52.49 -0.29 2.18 16 21 C 0.04 0.97 5.45 -17.43 -0.10 0.88 16 22 N -0.90 -26.39 13.97 55.49 0.78 -25.62 16 23 Si 0.89 21.88 24.81 -169.99 -4.22 17.67 16 24 H -0.29 -7.10 6.86 56.52 0.39 -6.72 16 25 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.27 -6.40 7.02 56.52 0.40 -6.00 16 27 C -0.01 -0.22 9.58 -39.23 -0.38 -0.60 16 28 C -0.21 -2.95 9.18 -39.45 -0.36 -3.32 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.08 0.82 6.16 -51.93 -0.32 0.50 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.54 6.17 -51.93 -0.32 0.22 16 36 H 0.06 0.41 8.07 -51.92 -0.42 -0.01 16 37 H 0.13 1.69 6.11 -52.49 -0.32 1.37 16 38 H 0.13 2.24 6.39 -52.49 -0.34 1.91 16 39 H 0.41 8.07 4.35 -40.82 -0.18 7.89 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.04 0.92 3.23 -51.93 -0.17 0.75 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.13 2.04 7.64 -52.48 -0.40 1.64 16 50 H 0.12 1.38 6.11 -52.49 -0.32 1.06 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -32.41 386.73 -9.07 -41.48 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.70 Total: 9.29 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.60 Total: -0.11 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.46 Total: -61.37 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.22 Total: 17.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.41 -9.07 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028348006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.943 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds