Wall clock time and date at job start Sat Apr 11 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46773 * 2 1 4 4 C 1.36445 * 124.85023 * 89.97782 * 3 2 1 5 5 C 1.50702 * 125.57331 * 359.75077 * 4 3 2 6 6 C 1.34493 * 108.85722 * 180.02562 * 4 3 2 7 7 C 1.46681 * 106.33001 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94178 * 180.02562 * 7 6 4 9 9 O 1.21633 * 119.99762 * 205.67312 * 8 7 6 10 10 N 1.34778 * 119.99966 * 25.66202 * 8 7 6 11 11 C 1.47162 * 120.70844 * 5.31973 * 10 8 7 12 12 C 1.53890 * 108.02470 * 132.75565 * 11 10 8 13 13 H 1.09005 * 112.09038 * 181.91106 * 12 11 10 14 14 C 1.54543 * 107.83048 * 305.86917 * 12 11 10 15 15 C 1.55852 * 104.09628 * 89.28206 * 14 12 11 16 16 C 1.54551 * 104.99722 * 359.97438 * 15 14 12 17 17 H 1.09005 * 112.17645 * 146.41882 * 16 15 14 18 18 C 1.47162 * 120.70864 * 185.04033 * 10 8 7 19 19 N 1.48307 * 107.20993 * 58.36566 * 12 11 10 20 20 C 1.36930 * 128.08149 * 106.69747 * 19 12 11 21 21 H 1.08005 * 119.99574 * 6.76973 * 20 19 12 22 22 C 1.38810 * 120.00484 * 186.76519 * 20 19 12 23 23 N 1.31623 * 119.99336 * 12.55436 * 22 20 19 24 24 Si 1.86797 * 120.00416 * 192.55129 * 22 20 19 25 25 H 1.48497 * 109.46858 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46950 * 120.00000 * 24 22 20 27 27 H 1.48499 * 109.47079 * 240.00024 * 24 22 20 28 28 C 1.34662 * 124.85144 * 269.99286 * 3 2 1 29 29 C 1.50695 * 125.79834 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.47226 * 60.00522 * 1 2 3 31 31 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47922 * 300.00264 * 1 2 3 33 33 H 1.09000 * 109.47480 * 240.00370 * 2 1 3 34 34 H 1.08995 * 109.47223 * 119.99742 * 2 1 3 35 35 H 1.09003 * 109.47159 * 90.00245 * 5 4 3 36 36 H 1.09001 * 109.47397 * 209.99928 * 5 4 3 37 37 H 1.09005 * 109.46995 * 330.00490 * 5 4 3 38 38 H 1.07996 * 126.82879 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.74954 * 252.39030 * 11 10 8 40 40 H 1.08993 * 109.74988 * 13.07467 * 11 10 8 41 41 H 1.09009 * 110.35953 * 207.92126 * 14 12 11 42 42 H 1.09000 * 110.36377 * 330.22963 * 14 12 11 43 43 H 1.08998 * 110.28647 * 241.09600 * 15 14 12 44 44 H 1.09005 * 110.29806 * 118.87410 * 15 14 12 45 45 H 1.09001 * 109.74898 * 346.88051 * 18 10 8 46 46 H 1.08997 * 109.75002 * 107.60518 * 18 10 8 47 47 H 0.97007 * 119.99369 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.47290 * 89.99909 * 29 28 3 49 49 H 1.09003 * 109.46876 * 209.99714 * 29 28 3 50 50 H 1.08995 * 109.47396 * 329.99552 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2777 2.1165 1.1197 5 6 2.1038 1.6424 2.5396 6 6 2.7081 3.3356 0.7492 7 6 2.7118 3.3435 -0.7176 8 6 3.1062 4.4580 -1.5957 9 8 2.6505 4.5363 -2.7208 10 7 3.9719 5.3911 -1.1527 11 6 4.6218 5.2504 0.1601 12 6 6.1248 5.5266 -0.0205 13 1 6.6785 5.4070 0.9108 14 6 6.6474 4.5912 -1.1342 15 6 6.4401 5.4087 -2.4449 16 6 5.8160 6.7466 -1.9873 17 1 6.1356 7.5834 -2.6084 18 6 4.2920 6.5695 -1.9741 19 7 6.2556 6.8945 -0.5785 20 6 6.6823 8.0292 0.0583 21 1 7.0771 7.9691 1.0619 22 6 6.6077 9.2565 -0.5858 23 7 5.9096 9.3759 -1.6953 24 14 7.4977 10.7385 0.1219 25 1 8.2062 10.3430 1.3656 26 1 8.4819 11.2442 -0.8685 27 1 6.5130 11.8063 0.4308 28 6 2.2748 2.1068 -1.1051 29 6 2.1091 1.6357 -2.5269 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0296 1.1822 2.8849 36 1 1.8596 2.4909 3.1787 37 1 1.2966 0.9111 2.5822 38 1 2.9942 4.1472 1.4018 39 1 4.1967 5.9693 0.8605 40 1 4.4752 4.2382 0.5370 41 1 7.7047 4.3739 -0.9819 42 1 6.0688 3.6677 -1.1563 43 1 5.7601 4.8827 -3.1149 44 1 7.3972 5.5849 -2.9360 45 1 3.9308 6.4185 -2.9914 46 1 3.8250 7.4557 -1.5446 47 1 5.8571 10.2337 -2.1452 48 1 1.1001 1.8643 -2.8701 49 1 2.8333 2.1429 -3.1644 50 1 2.2740 0.5594 -2.5747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029384001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:40 Heat of formation + Delta-G solvation = 52.417127 kcal Electronic energy + Delta-G solvation = -30311.785493 eV Core-core repulsion = 26533.893882 eV Total energy + Delta-G solvation = -3777.891611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48654 -39.54900 -37.38164 -34.33968 -33.50544 -32.64679 -32.18400 -30.69555 -29.40517 -29.18566 -28.93298 -26.32777 -24.66107 -24.20918 -23.52460 -23.18133 -21.28182 -19.80560 -19.57012 -18.90426 -17.72770 -16.96212 -16.21996 -15.69987 -15.48636 -15.17223 -14.85300 -14.64514 -14.30249 -13.76006 -13.57725 -13.48536 -13.34973 -13.11371 -12.93968 -12.85881 -12.85233 -12.56136 -12.36946 -12.35488 -12.03659 -11.71268 -11.65202 -11.56655 -11.50694 -11.35889 -11.26866 -10.93786 -10.80714 -10.69393 -10.17606 -9.95413 -9.72435 -9.47083 -9.40459 -9.14382 -8.72648 -8.36038 -7.96512 -7.70591 -6.78078 -5.74002 -3.07195 2.05741 2.52894 2.77469 3.40244 3.46612 3.48823 3.86226 4.04983 4.38026 4.48606 4.61350 4.68246 4.86028 4.88561 5.09788 5.23141 5.25821 5.28114 5.31933 5.40620 5.41541 5.49201 5.63537 5.66791 5.73791 5.77841 5.78653 5.86018 5.90188 6.01722 6.03306 6.09912 6.13699 6.29340 6.37992 6.47545 6.57234 6.65058 6.79090 6.85009 6.91053 6.97285 7.02320 7.14570 7.26426 7.34607 7.43124 7.60061 7.82967 8.24374 8.36126 9.01684 9.14452 9.76980 10.52499 11.36852 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.003380 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.611695 B = 8281.073899 C = 8802.411826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.440 5.440 4 C 0.003 3.997 5 C -0.081 4.081 6 C -0.164 4.164 7 C -0.215 4.215 8 C 0.581 3.419 9 O -0.569 6.569 10 N -0.585 5.585 11 C 0.087 3.913 12 C 0.133 3.867 13 H 0.074 0.926 14 C -0.122 4.122 15 C -0.134 4.134 16 C 0.160 3.840 17 H 0.131 0.869 18 C 0.112 3.888 19 N -0.587 5.587 20 C -0.219 4.219 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.914 5.914 24 Si 0.910 3.090 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.090 3.910 29 C -0.083 4.083 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.150 0.850 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.253 0.747 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -20.203 5.059 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.118 5.118 4 C -0.104 4.104 5 C -0.138 4.138 6 C -0.188 4.188 7 C -0.225 4.225 8 C 0.371 3.629 9 O -0.451 6.451 10 N -0.316 5.316 11 C -0.039 4.039 12 C 0.025 3.975 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.174 4.174 16 C 0.053 3.947 17 H 0.148 0.852 18 C -0.011 4.011 19 N -0.308 5.308 20 C -0.347 4.347 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.561 5.561 24 Si 0.741 3.259 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.025 4.025 29 C -0.140 4.140 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.167 0.833 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.218 -20.169 4.513 22.242 hybrid contribution 0.347 0.831 0.535 1.048 sum -7.870 -19.338 5.049 21.480 Atomic orbital electron populations 1.22164 0.94420 1.02762 1.03400 1.21797 0.95526 0.81075 1.04172 1.43526 1.51593 1.11608 1.05079 1.20154 1.08949 0.92851 0.88458 1.20291 1.01778 1.01831 0.89941 1.22042 1.06619 0.96733 0.93441 1.20241 1.13899 0.94998 0.93337 1.17388 0.78694 0.81235 0.85618 1.90686 1.57084 1.77054 1.20231 1.47945 1.41895 1.22554 1.19180 1.22913 0.95493 1.01015 0.84444 1.21940 0.92503 0.87258 0.95831 0.90781 1.22719 0.99353 0.97420 0.96662 1.22899 0.99792 0.98344 0.96318 1.22103 0.89658 0.95221 0.87738 0.85162 1.22278 0.99173 0.85525 0.94117 1.45228 1.75757 1.02689 1.07097 1.19068 1.33279 0.83818 0.98573 0.90377 1.24730 1.00325 0.97192 0.98217 1.69802 1.42605 1.23878 1.19843 0.86073 0.79138 0.82728 0.77962 1.20601 1.21763 1.21949 1.20134 1.02093 0.91384 0.88873 1.20385 1.03937 0.99926 0.89737 0.91695 0.90883 0.91840 0.89286 0.89327 0.91261 0.90175 0.92144 0.83283 0.92339 0.89635 0.92946 0.92879 0.92899 0.93078 0.91245 0.91152 0.93622 0.90655 0.89169 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.10 0.70 6.09 -4.04 -0.02 0.68 16 3 N -0.44 -5.05 2.68 -107.96 -0.29 -5.34 16 4 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 5 C -0.08 -0.65 9.81 36.01 0.35 -0.30 16 6 C -0.16 -2.39 8.52 -37.50 -0.32 -2.71 16 7 C -0.22 -3.65 5.73 -103.35 -0.59 -4.24 16 8 C 0.58 11.82 7.54 -12.59 -0.09 11.72 16 9 O -0.57 -12.89 15.04 5.25 0.08 -12.81 16 10 N -0.59 -12.10 2.27 -173.14 -0.39 -12.50 16 11 C 0.09 1.63 4.50 -3.22 -0.01 1.61 16 12 C 0.13 2.70 4.27 -65.66 -0.28 2.42 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.12 -2.31 6.31 -24.40 -0.15 -2.46 16 15 C -0.13 -2.79 6.22 -24.39 -0.15 -2.94 16 16 C 0.16 3.81 3.25 -65.89 -0.21 3.60 16 17 H 0.13 3.51 5.91 -51.93 -0.31 3.20 16 18 C 0.11 2.61 5.87 -3.46 -0.02 2.59 16 19 N -0.59 -14.37 2.82 -152.85 -0.43 -14.80 16 20 C -0.22 -5.86 10.39 -15.06 -0.16 -6.02 16 21 H 0.08 2.03 7.86 -52.48 -0.41 1.61 16 22 C -0.01 -0.23 5.42 -17.43 -0.09 -0.32 16 23 N -0.91 -25.78 10.55 55.49 0.59 -25.20 16 24 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 C 0.09 1.29 6.88 -81.88 -0.56 0.73 16 29 C -0.08 -1.02 9.39 36.00 0.34 -0.68 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.56 6.87 -51.93 -0.36 0.20 16 34 H 0.09 0.51 7.53 -51.93 -0.39 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.40 7.61 -51.93 -0.40 0.00 16 38 H 0.15 2.10 6.35 -52.49 -0.33 1.77 16 39 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.09 1.41 4.38 -51.93 -0.23 1.18 16 41 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 43 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.63 7.08 -51.93 -0.37 1.26 16 46 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.31 7.21 -51.93 -0.37 0.93 16 50 H 0.06 0.53 6.92 -51.93 -0.36 0.17 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -31.87 382.76 -10.00 -41.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.12 Total: 3.96 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.17 Total: 2.42 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.53 Total: -57.83 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.87 -10.00 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029384001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.282 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds