Wall clock time and date at job start Sat Apr 11 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47035 * 2 1 4 4 C 1.34769 * 120.00114 * 81.89758 * 3 2 1 5 5 O 1.21632 * 120.00431 * 183.85759 * 4 3 2 6 6 C 1.47269 * 119.99966 * 3.85496 * 4 3 2 7 7 C 1.46688 * 126.94131 * 349.70178 * 6 4 3 8 8 C 1.34487 * 106.32738 * 180.29270 * 7 6 4 9 9 N 1.36438 * 108.85970 * 359.75680 * 8 7 6 10 10 H 0.97005 * 124.85401 * 179.97438 * 9 8 7 11 11 C 1.34658 * 110.30338 * 359.97438 * 9 8 7 12 12 C 1.50694 * 125.80842 * 179.97438 * 11 9 8 13 13 C 1.53787 * 113.61048 * 60.02437 * 12 11 9 14 14 C 1.53784 * 87.08009 * 220.01813 * 13 12 11 15 15 C 1.53782 * 87.17195 * 25.39082 * 14 13 12 16 16 C 1.46503 * 119.99887 * 261.89269 * 3 2 1 17 17 H 1.08999 * 110.88916 * 9.71872 * 16 3 2 18 18 C 1.55158 * 111.00486 * 245.83067 * 16 3 2 19 19 C 1.54324 * 102.94455 * 277.42950 * 18 16 3 20 20 N 1.47022 * 107.27135 * 337.80810 * 19 18 16 21 21 C 1.36935 * 125.64939 * 178.98404 * 20 19 18 22 22 H 1.07994 * 120.00047 * 185.50862 * 21 20 19 23 23 C 1.38809 * 119.99834 * 5.51246 * 21 20 19 24 24 N 1.31618 * 120.00292 * 5.57610 * 23 21 20 25 25 Si 1.86798 * 120.00083 * 185.57144 * 23 21 20 26 26 H 1.48503 * 109.47286 * 94.99505 * 25 23 21 27 27 H 1.48504 * 109.47165 * 215.00033 * 25 23 21 28 28 H 1.48499 * 109.47042 * 334.99709 * 25 23 21 29 29 C 1.47430 * 108.70484 * 358.93864 * 20 19 18 30 30 H 1.09004 * 109.46719 * 59.99910 * 1 2 3 31 31 H 1.08996 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47172 * 300.00024 * 1 2 3 33 33 H 1.09001 * 109.46561 * 239.99864 * 2 1 3 34 34 H 1.08994 * 109.46667 * 120.00257 * 2 1 3 35 35 H 1.07996 * 126.83075 * 0.02562 * 7 6 4 36 36 H 1.08007 * 125.56710 * 179.75492 * 8 7 6 37 37 H 1.08997 * 112.85615 * 191.22016 * 12 11 9 38 38 H 1.08999 * 113.60834 * 105.47254 * 13 12 11 39 39 H 1.08994 * 113.61809 * 334.57165 * 13 12 11 40 40 H 1.09000 * 113.61099 * 139.97801 * 14 13 12 41 41 H 1.09000 * 113.61676 * 270.80069 * 14 13 12 42 42 H 1.09005 * 113.60867 * 89.15540 * 15 14 13 43 43 H 1.08993 * 113.61360 * 220.05376 * 15 14 13 44 44 H 1.08999 * 110.72101 * 35.79610 * 18 16 3 45 45 H 1.09000 * 110.71896 * 159.06496 * 18 16 3 46 46 H 1.09003 * 109.88036 * 97.22517 * 19 18 16 47 47 H 1.08996 * 109.87998 * 218.23659 * 19 18 16 48 48 H 0.97000 * 120.00186 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.37015 * 265.29206 * 29 20 19 50 50 H 1.08991 * 110.36597 * 142.96553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0879 2.0713 1.1555 5 8 2.4263 3.2396 1.1467 6 6 1.7540 1.4110 2.4288 7 6 1.1343 0.0929 2.6024 8 6 1.0126 -0.0960 3.9283 9 7 1.5117 0.9956 4.5770 10 1 1.5386 1.1036 5.5406 11 6 1.9619 1.9017 3.6884 12 6 2.5817 3.2336 4.0245 13 6 3.8574 3.1219 4.8760 14 6 3.3491 4.3455 5.6567 15 6 1.9302 3.9313 5.2323 16 6 2.4312 2.0121 -1.2561 17 1 2.1573 1.3931 -2.1104 18 6 3.9532 2.3138 -1.2530 19 6 4.0392 3.6502 -0.4862 20 7 2.7202 4.2929 -0.5798 21 6 2.3738 5.4904 -0.0131 22 1 1.3522 5.8366 -0.0644 23 6 3.3359 6.2592 0.6273 24 7 4.5996 5.8926 0.5955 25 14 2.8372 7.8143 1.5341 26 1 2.6359 7.5056 2.9727 27 1 3.9065 8.8349 1.3917 28 1 1.5726 8.3388 0.9588 29 6 1.8324 3.4350 -1.3857 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.8317 -0.5882 1.8208 36 1 0.5888 -0.9692 4.4022 37 1 2.6929 3.8804 3.1543 38 1 4.7736 3.3107 4.3166 39 1 3.9053 2.2116 5.4737 40 1 3.5201 4.2797 6.7311 41 1 3.6707 5.2974 5.2343 42 1 1.4501 3.2427 5.9277 43 1 1.2928 4.7725 4.9603 44 1 4.5003 1.5314 -0.7270 45 1 4.3256 2.4285 -2.2709 46 1 4.2870 3.4628 0.5587 47 1 4.7981 4.2887 -0.9382 48 1 5.2718 6.4297 1.0433 49 1 1.8384 3.7556 -2.4275 50 1 0.8184 3.4576 -0.9868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033952678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:12 Heat of formation + Delta-G solvation = 130.769709 kcal Electronic energy + Delta-G solvation = -31565.920110 eV Core-core repulsion = 27791.426122 eV Total energy + Delta-G solvation = -3774.493988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20341 -39.25023 -37.89273 -35.78313 -35.22358 -32.25724 -30.48592 -29.87851 -29.25683 -28.61017 -26.93925 -25.37024 -24.90178 -24.12175 -23.08985 -22.07272 -20.87256 -19.74456 -19.60117 -19.15215 -17.76214 -17.18131 -16.33991 -15.90083 -15.30255 -15.13394 -14.55257 -14.34524 -14.31701 -14.13278 -13.82307 -13.56920 -13.43885 -12.88596 -12.36870 -12.28921 -12.08606 -11.96145 -11.87170 -11.77273 -11.71337 -11.56374 -11.50525 -11.24252 -10.84689 -10.66359 -10.62015 -10.47773 -10.38756 -10.16886 -9.98067 -9.86008 -9.73025 -9.55550 -9.26722 -8.50304 -8.34441 -8.14708 -7.74003 -7.56150 -6.07238 -5.28487 -2.52553 2.32528 2.74787 3.39836 3.58689 3.64196 3.65327 3.84248 4.42161 4.82529 4.85208 4.93553 4.97525 5.14557 5.22264 5.28995 5.39579 5.44992 5.47789 5.64618 5.69360 5.74191 5.80011 5.80975 5.85182 5.87743 5.90345 6.03768 6.06246 6.12182 6.13834 6.24607 6.25447 6.32187 6.35108 6.43333 6.46392 6.56692 6.72181 6.79617 6.83013 6.91921 6.96025 7.12900 7.34648 7.59802 7.71736 7.91829 8.08727 8.22428 8.42164 8.68801 9.53778 9.64139 10.26344 10.94687 11.83637 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009321 B = 0.007434 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.301414 B = 3765.628725 C = 5987.255875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.535 3.465 5 O -0.419 6.419 6 C -0.209 4.209 7 C -0.197 4.197 8 C -0.032 4.032 9 N -0.556 5.556 10 H 0.407 0.593 11 C 0.111 3.889 12 C -0.053 4.053 13 C -0.132 4.132 14 C -0.139 4.139 15 C -0.138 4.138 16 C 0.135 3.865 17 H 0.077 0.923 18 C -0.160 4.160 19 C 0.192 3.808 20 N -0.561 5.561 21 C -0.175 4.175 22 H 0.063 0.937 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.892 3.108 26 H -0.295 1.295 27 H -0.298 1.298 28 H -0.287 1.287 29 C 0.132 3.868 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.041 0.959 48 H 0.242 0.758 49 H 0.018 0.982 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 -15.546 6.334 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 N -0.344 5.344 4 C 0.321 3.679 5 O -0.286 6.286 6 C -0.219 4.219 7 C -0.221 4.221 8 C -0.160 4.160 9 N -0.151 5.151 10 H 0.243 0.757 11 C -0.006 4.006 12 C -0.071 4.071 13 C -0.169 4.169 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.030 3.970 17 H 0.095 0.905 18 C -0.199 4.199 19 C 0.068 3.932 20 N -0.285 5.285 21 C -0.304 4.304 22 H 0.081 0.919 23 C -0.205 4.205 24 N -0.574 5.574 25 Si 0.725 3.275 26 H -0.223 1.223 27 H -0.225 1.225 28 H -0.213 1.213 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.036 0.964 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.610 -14.683 6.574 17.038 hybrid contribution -0.469 0.445 1.109 1.284 sum -6.079 -14.238 7.683 17.283 Atomic orbital electron populations 1.22409 0.96940 1.01177 1.03054 1.21954 0.93724 0.84408 1.02769 1.47582 1.67232 1.12797 1.06742 1.17696 0.80471 0.87393 0.82337 1.91525 1.40319 1.12332 1.84456 1.20580 1.11635 0.96717 0.92987 1.23035 1.06149 0.97622 0.95265 1.21684 1.08072 0.92980 0.93248 1.41498 1.49489 1.15487 1.08648 0.75716 1.20101 0.99946 0.92312 0.88221 1.21727 0.94201 0.91319 0.99878 1.22910 0.98595 0.97455 0.97976 1.22787 0.96296 0.99170 0.99348 1.22976 0.96967 1.00422 0.97209 1.22244 0.95328 0.94690 0.84714 0.90497 1.23366 0.94905 1.01150 1.00521 1.21075 0.87878 0.87045 0.97235 1.44029 1.07656 1.19579 1.57284 1.18765 0.93116 0.92310 1.26204 0.91915 1.24472 0.95441 0.98220 1.02371 1.69952 0.99180 1.39228 1.49009 0.86360 0.76782 0.84008 0.80372 1.22313 1.22492 1.21345 1.21723 0.94562 0.88926 0.94361 0.92591 0.92473 0.91378 0.91734 0.89133 0.81918 0.82296 0.83091 0.90573 0.91393 0.91945 0.89525 0.91571 0.90916 0.92669 0.92267 0.93780 0.94101 0.94768 0.96426 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.67 37.16 0.32 -1.73 16 2 C 0.10 1.22 5.62 -4.04 -0.02 1.20 16 3 N -0.61 -10.58 2.58 -164.98 -0.43 -11.01 16 4 C 0.53 10.91 7.05 -12.59 -0.09 10.83 16 5 O -0.42 -10.31 6.59 5.25 0.03 -10.28 16 6 C -0.21 -3.67 5.98 -103.35 -0.62 -4.29 16 7 C -0.20 -2.65 7.44 -37.50 -0.28 -2.93 16 8 C -0.03 -0.37 11.89 -16.83 -0.20 -0.57 16 9 N -0.56 -6.85 5.72 -9.11 -0.05 -6.90 16 10 H 0.41 3.86 8.22 -40.82 -0.34 3.53 16 11 C 0.11 1.81 6.23 -81.88 -0.51 1.30 16 12 C -0.05 -0.93 3.98 -90.87 -0.36 -1.29 16 13 C -0.13 -2.03 7.63 -25.91 -0.20 -2.22 16 14 C -0.14 -2.02 8.08 -25.92 -0.21 -2.22 16 15 C -0.14 -2.04 7.64 -25.83 -0.20 -2.24 16 16 C 0.13 2.48 3.77 -65.77 -0.25 2.23 16 17 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 18 C -0.16 -3.21 6.52 -24.90 -0.16 -3.37 16 19 C 0.19 4.93 4.24 -3.06 -0.01 4.92 16 20 N -0.56 -14.84 1.74 -170.07 -0.30 -15.13 16 21 C -0.17 -5.09 8.77 -15.06 -0.13 -5.23 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.32 5.46 -17.43 -0.10 -0.41 16 24 N -0.92 -28.21 10.42 55.49 0.58 -27.63 16 25 Si 0.89 23.39 29.56 -169.99 -5.02 18.37 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 27 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 C 0.13 2.92 6.21 -2.52 -0.02 2.90 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.90 6.29 -51.93 -0.33 0.58 16 33 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 34 H 0.09 1.12 4.60 -51.93 -0.24 0.89 16 35 H 0.16 1.85 3.70 -52.49 -0.19 1.66 16 36 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.15 3.48 5.91 -51.93 -0.31 3.18 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.07 0.80 7.22 -51.93 -0.38 0.42 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.04 1.27 6.22 -51.93 -0.32 0.95 16 47 H 0.04 1.19 7.07 -51.93 -0.37 0.82 16 48 H 0.24 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -33.74 371.81 -10.51 -44.25 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.90 Total: 5.85 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.03 Total: -3.12 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.20 Total: -60.67 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.03 Total: -10.28 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.74 -10.51 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033952678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.022 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds