Wall clock time and date at job start Sat Apr 11 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36452 * 124.85383 * 2 1 4 4 C 1.34483 * 108.86038 * 180.02562 * 3 2 1 5 5 C 1.46695 * 106.33220 * 359.97438 * 4 3 2 6 6 C 1.47259 * 126.94410 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00095 * 212.37792 * 6 5 4 8 8 N 1.34781 * 119.99530 * 32.37934 * 6 5 4 9 9 C 1.46924 * 120.63104 * 5.88816 * 8 6 5 10 10 C 1.53196 * 108.76921 * 233.62759 * 9 8 6 11 11 C 1.53043 * 109.31321 * 305.36138 * 10 9 8 12 12 C 1.53043 * 109.53491 * 61.36775 * 11 10 9 13 13 C 1.46930 * 120.62631 * 185.90118 * 8 6 5 14 14 H 1.08993 * 109.58773 * 246.30065 * 13 8 6 15 15 C 1.52995 * 109.58883 * 6.58657 * 13 8 6 16 16 H 1.09006 * 110.88737 * 31.08764 * 15 13 8 17 17 C 1.55159 * 111.00587 * 267.20886 * 15 13 8 18 18 C 1.54323 * 102.94090 * 206.42421 * 17 15 13 19 19 N 1.47021 * 107.40422 * 22.11135 * 18 17 15 20 20 C 1.36937 * 125.64572 * 181.10014 * 19 18 17 21 21 H 1.07999 * 119.99540 * 169.61641 * 20 19 18 22 22 C 1.38807 * 120.00258 * 349.62001 * 20 19 18 23 23 N 1.31618 * 120.00414 * 13.78147 * 22 20 19 24 24 Si 1.86801 * 120.00111 * 193.78359 * 22 20 19 25 25 H 1.48493 * 109.47381 * 94.92655 * 24 22 20 26 26 H 1.48494 * 109.47205 * 214.93111 * 24 22 20 27 27 H 1.48504 * 109.47127 * 334.92871 * 24 22 20 28 28 C 1.47750 * 108.52801 * 1.18314 * 19 18 17 29 29 C 1.34660 * 124.85356 * 180.32780 * 2 1 3 30 30 H 1.09001 * 109.47073 * 89.97936 * 1 2 3 31 31 H 1.09003 * 109.47340 * 209.97838 * 1 2 3 32 32 H 1.09005 * 109.47280 * 329.98475 * 1 2 3 33 33 H 1.08002 * 125.57035 * 0.03338 * 3 2 1 34 34 H 1.07998 * 126.83699 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.58648 * 353.41058 * 9 8 6 36 36 H 1.09002 * 109.58894 * 113.70230 * 9 8 6 37 37 H 1.08997 * 109.50277 * 65.31519 * 10 9 8 38 38 H 1.09002 * 109.49454 * 185.38238 * 10 9 8 39 39 H 1.09001 * 109.45909 * 181.38696 * 11 10 9 40 40 H 1.08998 * 109.45939 * 301.34738 * 11 10 9 41 41 H 1.08996 * 109.49401 * 178.68097 * 12 11 10 42 42 H 1.08999 * 109.49559 * 58.58579 * 12 11 10 43 43 H 1.08994 * 110.71789 * 88.05919 * 17 15 13 44 44 H 1.08997 * 110.71884 * 324.78454 * 17 15 13 45 45 H 1.09000 * 109.87950 * 141.60912 * 18 17 15 46 46 H 1.09006 * 109.88161 * 262.61481 * 18 17 15 47 47 H 0.96998 * 120.00782 * 180.02562 * 23 22 20 48 48 H 1.08992 * 110.28645 * 216.94260 * 28 19 18 49 49 H 1.09001 * 110.52202 * 94.67535 * 28 19 18 50 50 H 1.08002 * 125.79611 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7283 -1.5958 -0.0013 7 8 4.6856 -2.6726 -0.5651 8 7 5.8577 -1.2061 0.6227 9 6 5.8862 0.0303 1.4159 10 6 7.0405 0.9072 0.9204 11 6 8.3418 0.1029 0.9632 12 6 8.2245 -1.1098 0.0370 13 6 7.0837 -2.0097 0.5224 14 1 7.3315 -2.4218 1.5005 15 6 6.8696 -3.1497 -0.4753 16 1 6.1700 -2.8552 -1.2576 17 6 6.3883 -4.4366 0.2455 18 6 6.8756 -5.5609 -0.6925 19 7 7.9791 -5.0155 -1.4965 20 6 8.6705 -5.6920 -2.4657 21 1 9.3492 -5.1598 -3.1158 22 6 8.4991 -7.0615 -2.6128 23 7 7.4908 -7.6659 -2.0208 24 14 9.6993 -8.0470 -3.6509 25 1 10.7488 -8.6287 -2.7761 26 1 8.9720 -9.1397 -4.3453 27 1 10.3314 -7.1559 -4.6568 28 6 8.2164 -3.6176 -1.0810 29 6 2.2345 -1.1050 -0.0063 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5135 32 1 -0.3634 0.8899 0.5141 33 1 1.8829 2.1373 0.0005 34 1 4.3981 1.4017 -0.0003 35 1 4.9437 0.5640 1.2946 36 1 6.0354 -0.2136 2.4677 37 1 6.8426 1.2249 -0.1034 38 1 7.1328 1.7837 1.5618 39 1 9.1687 0.7323 0.6344 40 1 8.5262 -0.2354 1.9828 41 1 9.1598 -1.6693 0.0500 42 1 8.0154 -0.7732 -0.9784 43 1 5.3017 -4.4481 0.3293 44 1 6.8529 -4.5252 1.2276 45 1 7.2290 -6.4075 -0.1039 46 1 6.0623 -5.8774 -1.3455 47 1 7.3712 -8.6230 -2.1232 48 1 8.4770 -3.0058 -1.9446 49 1 9.0063 -3.5706 -0.3314 50 1 1.8767 -2.1240 -0.0125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039196708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:28 Heat of formation + Delta-G solvation = 79.380618 kcal Electronic energy + Delta-G solvation = -29829.686186 eV Core-core repulsion = 26052.963800 eV Total energy + Delta-G solvation = -3776.722386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.45464 -40.07800 -37.11972 -36.70216 -33.54832 -32.67225 -32.30808 -30.88812 -29.38466 -28.81351 -27.04101 -26.97914 -24.98039 -24.27489 -22.90185 -21.96153 -20.86436 -20.21558 -19.46455 -19.35996 -18.87218 -17.35520 -16.59489 -16.03434 -15.71459 -15.48544 -14.84453 -14.69326 -14.47456 -14.14562 -13.98225 -13.69206 -13.62335 -13.41148 -13.17283 -13.04271 -12.80045 -12.58739 -12.42653 -12.11651 -12.01007 -11.81134 -11.69921 -11.53128 -11.10918 -10.90710 -10.81334 -10.70948 -10.51392 -10.47955 -9.95042 -9.84040 -9.63434 -9.42434 -9.33291 -8.65333 -8.54683 -8.39442 -8.28359 -8.03506 -6.54375 -5.54215 -2.81901 1.88621 2.28264 2.64020 3.32355 3.52336 3.57275 3.59411 3.60109 4.41852 4.66868 4.69734 4.77755 4.80526 4.87254 4.89642 4.93676 5.03569 5.12931 5.22451 5.33638 5.42783 5.48291 5.62108 5.63729 5.72979 5.76886 5.82888 5.85506 5.92009 5.97674 6.06939 6.17632 6.20044 6.26105 6.32551 6.48587 6.58050 6.61553 6.69561 6.80877 6.89367 6.94173 7.05777 7.10231 7.20469 7.57477 7.80697 7.82751 7.98489 8.09136 8.49579 8.68581 9.43175 10.05400 10.76977 11.58557 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.003325 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.525774 B = 8419.000198 C = 9847.434475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.019 4.019 4 C -0.176 4.176 5 C -0.222 4.222 6 C 0.579 3.421 7 O -0.511 6.511 8 N -0.602 5.602 9 C 0.090 3.910 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.132 4.132 13 C 0.163 3.837 14 H 0.064 0.936 15 C -0.112 4.112 16 H 0.124 0.876 17 C -0.124 4.124 18 C 0.179 3.821 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.913 5.913 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.139 3.861 29 C 0.064 3.936 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.250 0.750 48 H 0.030 0.970 49 H 0.012 0.988 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 23.447 9.920 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.200 4.200 5 C -0.232 4.232 6 C 0.369 3.631 7 O -0.389 6.389 8 N -0.335 5.335 9 C -0.033 4.033 10 C -0.173 4.173 11 C -0.157 4.157 12 C -0.170 4.170 13 C 0.060 3.940 14 H 0.082 0.918 15 C -0.131 4.131 16 H 0.142 0.858 17 C -0.162 4.162 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.354 4.354 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.561 5.561 24 Si 0.732 3.268 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.207 1.207 28 C 0.012 3.988 29 C -0.070 4.070 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.029 0.971 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.721 22.666 9.536 27.686 hybrid contribution 0.692 -0.469 -0.454 0.951 sum -12.029 22.197 9.082 26.831 Atomic orbital electron populations 1.22093 0.77084 1.04485 1.03515 1.43580 1.06636 1.05919 1.56493 1.21729 0.90639 0.91197 1.11011 1.22097 0.95875 0.93366 1.08708 1.20540 0.92860 0.93418 1.16376 1.17461 0.81850 0.85269 0.78544 1.90815 1.81688 1.21965 1.44383 1.47838 1.10514 1.24535 1.50600 1.22158 1.00832 0.85690 0.94603 1.21919 0.95467 0.98043 1.01862 1.21539 0.96994 0.97076 1.00132 1.22057 0.99185 0.96194 0.99570 1.21303 0.82659 0.90785 0.99260 0.91758 1.23199 0.98244 0.92808 0.98853 0.85844 1.22858 1.00294 0.95826 0.97203 1.21088 0.90054 0.91944 0.91467 1.44552 1.38238 1.08473 1.41864 1.19030 1.18067 0.89709 1.08552 0.90726 1.24838 0.98502 0.96534 1.00502 1.70062 1.28776 1.09042 1.48191 0.86234 0.81109 0.80080 0.79329 1.21792 1.22011 1.20725 1.21754 0.94093 0.87214 0.95736 1.21766 0.89765 0.91715 1.03729 0.90734 0.89634 0.89766 0.81856 0.83302 0.87606 0.92219 0.91576 0.91277 0.91995 0.92033 0.90092 0.91452 0.91350 0.94298 0.94607 0.94430 0.93999 0.95134 0.97077 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.03 59.84 0.66 0.97 16 2 N -0.45 -3.84 3.09 -124.53 -0.38 -4.22 16 3 C -0.02 -0.16 11.34 -16.82 -0.19 -0.35 16 4 C -0.18 -1.78 8.69 -37.50 -0.33 -2.10 16 5 C -0.22 -2.92 5.66 -103.35 -0.59 -3.50 16 6 C 0.58 9.42 7.40 -12.59 -0.09 9.32 16 7 O -0.51 -10.37 10.86 5.26 0.06 -10.31 16 8 N -0.60 -8.62 2.97 -166.54 -0.49 -9.11 16 9 C 0.09 0.94 5.89 -3.71 -0.02 0.92 16 10 C -0.13 -1.22 6.00 -26.61 -0.16 -1.38 16 11 C -0.12 -1.25 5.88 -26.69 -0.16 -1.41 16 12 C -0.13 -1.81 4.48 -26.61 -0.12 -1.93 16 13 C 0.16 2.61 2.86 -67.60 -0.19 2.42 16 14 H 0.06 1.04 7.58 -51.93 -0.39 0.65 16 15 C -0.11 -2.31 2.05 -88.47 -0.18 -2.50 16 16 H 0.12 2.87 5.12 -55.41 -0.28 2.58 16 17 C -0.12 -2.79 5.93 -24.90 -0.15 -2.94 16 18 C 0.18 4.97 5.39 -3.07 -0.02 4.95 16 19 N -0.61 -17.23 3.41 -169.82 -0.58 -17.81 16 20 C -0.23 -6.83 10.24 -15.06 -0.15 -6.98 16 21 H 0.07 2.18 7.87 -52.49 -0.41 1.77 16 22 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 23 N -0.91 -28.96 10.49 55.49 0.58 -28.38 16 24 Si 0.90 23.42 29.58 -169.99 -5.03 18.40 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.14 3.21 5.35 -2.35 -0.01 3.19 16 29 C 0.06 0.73 11.25 -16.84 -0.19 0.54 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 32 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 33 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.15 1.27 6.67 -52.49 -0.35 0.92 16 35 H 0.11 0.99 3.46 -51.93 -0.18 0.81 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.16 6.57 -51.93 -0.34 0.82 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.55 6.45 -51.93 -0.34 1.22 16 44 H 0.04 0.82 7.69 -51.93 -0.40 0.42 16 45 H 0.04 1.08 7.35 -51.93 -0.38 0.69 16 46 H 0.04 1.16 7.62 -51.93 -0.40 0.76 16 47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.03 0.69 8.11 -51.93 -0.42 0.27 16 49 H 0.01 0.26 6.98 -51.93 -0.36 -0.10 16 50 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -36.91 375.78 -10.21 -47.11 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.04 Total: -0.24 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.98 Total: -1.10 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.88 Total: -59.53 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.06 Total: -10.31 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.03 Total: 18.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.91 -10.21 -47.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039196708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.496 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds