Wall clock time and date at job start Sat Apr 11 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36452 * 124.85383 * 2 1 4 4 C 1.34483 * 108.86038 * 180.02562 * 3 2 1 5 5 C 1.46695 * 106.33220 * 359.97438 * 4 3 2 6 6 C 1.47259 * 126.94410 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00095 * 212.37792 * 6 5 4 8 8 N 1.34781 * 119.99530 * 32.37934 * 6 5 4 9 9 C 1.46924 * 120.63104 * 5.88816 * 8 6 5 10 10 C 1.53196 * 108.76921 * 233.62759 * 9 8 6 11 11 C 1.53043 * 109.31321 * 305.36138 * 10 9 8 12 12 C 1.53043 * 109.53491 * 61.36775 * 11 10 9 13 13 C 1.46930 * 120.62631 * 185.90118 * 8 6 5 14 14 H 1.08993 * 109.58773 * 246.30065 * 13 8 6 15 15 C 1.52995 * 109.58883 * 6.58657 * 13 8 6 16 16 H 1.09006 * 110.88737 * 31.08764 * 15 13 8 17 17 C 1.55159 * 111.00587 * 267.20886 * 15 13 8 18 18 C 1.54323 * 102.94090 * 206.42421 * 17 15 13 19 19 N 1.47021 * 107.40422 * 22.11135 * 18 17 15 20 20 C 1.36937 * 125.64572 * 181.10014 * 19 18 17 21 21 H 1.07999 * 119.99540 * 169.61641 * 20 19 18 22 22 C 1.38807 * 120.00258 * 349.62001 * 20 19 18 23 23 N 1.31618 * 120.00414 * 13.78147 * 22 20 19 24 24 Si 1.86801 * 120.00111 * 193.78359 * 22 20 19 25 25 H 1.48493 * 109.47381 * 94.92655 * 24 22 20 26 26 H 1.48494 * 109.47205 * 214.93111 * 24 22 20 27 27 H 1.48504 * 109.47127 * 334.92871 * 24 22 20 28 28 C 1.47750 * 108.52801 * 1.18314 * 19 18 17 29 29 C 1.34660 * 124.85356 * 180.32780 * 2 1 3 30 30 H 1.09001 * 109.47073 * 89.97936 * 1 2 3 31 31 H 1.09003 * 109.47340 * 209.97838 * 1 2 3 32 32 H 1.09005 * 109.47280 * 329.98475 * 1 2 3 33 33 H 1.08002 * 125.57035 * 0.03338 * 3 2 1 34 34 H 1.07998 * 126.83699 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.58648 * 353.41058 * 9 8 6 36 36 H 1.09002 * 109.58894 * 113.70230 * 9 8 6 37 37 H 1.08997 * 109.50277 * 65.31519 * 10 9 8 38 38 H 1.09002 * 109.49454 * 185.38238 * 10 9 8 39 39 H 1.09001 * 109.45909 * 181.38696 * 11 10 9 40 40 H 1.08998 * 109.45939 * 301.34738 * 11 10 9 41 41 H 1.08996 * 109.49401 * 178.68097 * 12 11 10 42 42 H 1.08999 * 109.49559 * 58.58579 * 12 11 10 43 43 H 1.08994 * 110.71789 * 88.05919 * 17 15 13 44 44 H 1.08997 * 110.71884 * 324.78454 * 17 15 13 45 45 H 1.09000 * 109.87950 * 141.60912 * 18 17 15 46 46 H 1.09006 * 109.88161 * 262.61481 * 18 17 15 47 47 H 0.96998 * 120.00782 * 180.02562 * 23 22 20 48 48 H 1.08992 * 110.28645 * 216.94260 * 28 19 18 49 49 H 1.09001 * 110.52202 * 94.67535 * 28 19 18 50 50 H 1.08002 * 125.79611 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7283 -1.5958 -0.0013 7 8 4.6856 -2.6726 -0.5651 8 7 5.8577 -1.2061 0.6227 9 6 5.8862 0.0303 1.4159 10 6 7.0405 0.9072 0.9204 11 6 8.3418 0.1029 0.9632 12 6 8.2245 -1.1098 0.0370 13 6 7.0837 -2.0097 0.5224 14 1 7.3315 -2.4218 1.5005 15 6 6.8696 -3.1497 -0.4753 16 1 6.1700 -2.8552 -1.2576 17 6 6.3883 -4.4366 0.2455 18 6 6.8756 -5.5609 -0.6925 19 7 7.9791 -5.0155 -1.4965 20 6 8.6705 -5.6920 -2.4657 21 1 9.3492 -5.1598 -3.1158 22 6 8.4991 -7.0615 -2.6128 23 7 7.4908 -7.6659 -2.0208 24 14 9.6993 -8.0470 -3.6509 25 1 10.7488 -8.6287 -2.7761 26 1 8.9720 -9.1397 -4.3453 27 1 10.3314 -7.1559 -4.6568 28 6 8.2164 -3.6176 -1.0810 29 6 2.2345 -1.1050 -0.0063 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5135 32 1 -0.3634 0.8899 0.5141 33 1 1.8829 2.1373 0.0005 34 1 4.3981 1.4017 -0.0003 35 1 4.9437 0.5640 1.2946 36 1 6.0354 -0.2136 2.4677 37 1 6.8426 1.2249 -0.1034 38 1 7.1328 1.7837 1.5618 39 1 9.1687 0.7323 0.6344 40 1 8.5262 -0.2354 1.9828 41 1 9.1598 -1.6693 0.0500 42 1 8.0154 -0.7732 -0.9784 43 1 5.3017 -4.4481 0.3293 44 1 6.8529 -4.5252 1.2276 45 1 7.2290 -6.4075 -0.1039 46 1 6.0623 -5.8774 -1.3455 47 1 7.3712 -8.6230 -2.1232 48 1 8.4770 -3.0058 -1.9446 49 1 9.0063 -3.5706 -0.3314 50 1 1.8767 -2.1240 -0.0125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039196708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:26 Heat of formation + Delta-G solvation = 56.353318 kcal Electronic energy + Delta-G solvation = -29830.684724 eV Core-core repulsion = 26052.963800 eV Total energy + Delta-G solvation = -3777.720925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28915 -41.23483 -38.71548 -38.10781 -35.01402 -34.03498 -33.26936 -32.43472 -30.90045 -30.07040 -28.67279 -27.73271 -26.65734 -25.65333 -24.20540 -22.99835 -22.00328 -21.65240 -21.03483 -20.60769 -19.87428 -18.83331 -18.19328 -17.26802 -16.86178 -16.63399 -16.13829 -15.98990 -15.81888 -15.60869 -15.28310 -14.94830 -14.63536 -14.52934 -14.17669 -14.01678 -13.87896 -13.78775 -13.65427 -13.60677 -13.26637 -13.14474 -12.98524 -12.85971 -12.83858 -12.70481 -12.20676 -12.08533 -12.00135 -11.88796 -11.66931 -11.48147 -11.40025 -11.32578 -11.06967 -10.64542 -9.87562 -9.47394 -9.28394 -9.16150 -8.83956 -7.87551 -5.20066 0.94095 1.42303 1.46575 1.55513 1.57312 1.95827 2.30844 2.49306 2.53018 3.28863 3.60738 3.76366 3.91226 3.99906 4.06622 4.10574 4.13450 4.17667 4.28591 4.30405 4.37313 4.42822 4.49252 4.51504 4.62386 4.66631 4.71939 4.77154 4.77979 4.85054 4.95505 5.01038 5.06258 5.10063 5.11644 5.12710 5.21225 5.24304 5.25731 5.34744 5.46673 5.53127 5.60493 5.72799 5.75074 5.82941 5.99446 6.14753 6.19487 6.43306 6.69472 7.08580 7.48357 7.77871 8.48415 9.25082 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.003325 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.525774 B = 8419.000198 C = 9847.434475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.445 5.445 3 C -0.003 4.003 4 C -0.189 4.189 5 C -0.254 4.254 6 C 0.570 3.430 7 O -0.568 6.568 8 N -0.599 5.599 9 C 0.085 3.915 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.068 0.932 15 C -0.094 4.094 16 H 0.100 0.900 17 C -0.107 4.107 18 C 0.192 3.808 19 N -0.629 5.629 20 C -0.248 4.248 21 H 0.082 0.918 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.265 1.265 28 C 0.138 3.862 29 C 0.051 3.949 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.205 0.795 34 H 0.165 0.835 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.003 0.997 46 H -0.009 1.009 47 H 0.247 0.753 48 H 0.032 0.968 49 H 0.027 0.973 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 27.322 10.946 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.119 5.119 3 C -0.130 4.130 4 C -0.212 4.212 5 C -0.264 4.264 6 C 0.362 3.638 7 O -0.451 6.451 8 N -0.331 5.331 9 C -0.036 4.036 10 C -0.166 4.166 11 C -0.152 4.152 12 C -0.166 4.166 13 C 0.064 3.936 14 H 0.086 0.914 15 C -0.113 4.113 16 H 0.117 0.883 17 C -0.145 4.145 18 C 0.067 3.933 19 N -0.355 5.355 20 C -0.377 4.377 21 H 0.100 0.900 22 C -0.261 4.261 23 N -0.597 5.597 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.189 1.189 28 C 0.013 3.987 29 C -0.085 4.085 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.222 0.778 34 H 0.182 0.818 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.009 0.991 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.045 0.955 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.631 26.626 10.591 31.316 hybrid contribution 0.544 -1.629 -0.783 1.887 sum -12.087 24.997 9.808 29.448 Atomic orbital electron populations 1.22409 0.74544 1.06262 1.04580 1.43870 1.08182 1.05123 1.54772 1.22362 0.89933 0.92507 1.08179 1.22260 0.97532 0.91622 1.09769 1.20448 0.92104 0.94868 1.18989 1.18053 0.83035 0.85029 0.77689 1.90777 1.82821 1.24546 1.46912 1.47929 1.09270 1.25477 1.50422 1.22467 1.02452 0.84186 0.94454 1.21909 0.93753 0.98506 1.02423 1.21530 0.98485 0.95699 0.99531 1.21995 0.97460 0.97280 0.99859 1.21098 0.84575 0.90164 0.97755 0.91438 1.22951 0.95647 0.93542 0.99161 0.88283 1.22664 0.99952 0.95106 0.96784 1.20788 0.88607 0.92867 0.91018 1.44916 1.38262 1.10608 1.41713 1.19479 1.18303 0.90536 1.09372 0.90050 1.25817 1.00113 0.97635 1.02580 1.70301 1.30439 1.08938 1.50063 0.85023 0.78255 0.78097 0.77786 1.21080 1.22086 1.18932 1.21938 0.95921 0.84641 0.96205 1.21766 0.90030 0.92561 1.04175 0.89979 0.89048 0.86942 0.77833 0.81788 0.86181 0.91194 0.91934 0.87860 0.90305 0.91161 0.90798 0.92667 0.91843 0.92677 0.97846 0.99095 0.94423 0.94953 0.95493 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 11.03 127.77 1.41 1.79 16 2 N -0.44 -6.61 3.09 -547.89 -1.69 -8.30 16 3 C 0.00 -0.03 11.34 83.11 0.94 0.91 16 4 C -0.19 -3.36 8.69 23.62 0.21 -3.15 16 5 C -0.25 -6.64 5.66 -19.04 -0.11 -6.75 16 6 C 0.57 19.18 7.40 86.61 0.64 19.82 16 7 O -0.57 -24.77 10.86 -4.10 -0.04 -24.81 16 8 N -0.60 -16.92 2.97 -799.07 -2.37 -19.29 16 9 C 0.09 1.56 5.89 86.36 0.51 2.07 16 10 C -0.13 -1.86 6.00 30.67 0.18 -1.67 16 11 C -0.11 -2.04 5.88 30.62 0.18 -1.86 16 12 C -0.13 -3.37 4.48 30.67 0.14 -3.23 16 13 C 0.17 5.35 2.86 44.97 0.13 5.48 16 14 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 15 C -0.09 -4.05 2.05 -9.40 -0.02 -4.07 16 16 H 0.10 4.91 5.12 -57.50 -0.29 4.62 16 17 C -0.11 -5.11 5.93 31.78 0.19 -4.92 16 18 C 0.19 11.45 5.39 86.73 0.47 11.92 16 19 N -0.63 -37.52 3.41 -691.17 -2.35 -39.88 16 20 C -0.25 -15.56 10.24 84.03 0.86 -14.70 16 21 H 0.08 4.85 7.87 -2.91 -0.02 4.83 16 22 C -0.07 -4.29 5.46 84.86 0.46 -3.83 16 23 N -0.95 -63.21 10.49 21.65 0.23 -62.98 16 24 Si 0.98 49.43 29.58 68.60 2.03 51.46 16 25 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 27 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 28 C 0.14 6.59 5.35 86.79 0.46 7.05 16 29 C 0.05 1.16 11.25 83.91 0.94 2.11 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.47 8.13 -2.39 -0.02 0.45 16 32 H 0.11 0.09 8.13 -2.38 -0.02 0.07 16 33 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.16 2.28 6.67 -2.91 -0.02 2.26 16 35 H 0.12 1.91 3.46 -2.39 -0.01 1.90 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 2.04 6.57 -2.39 -0.02 2.02 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 3.10 6.45 -2.39 -0.02 3.08 16 44 H 0.05 2.41 7.69 -2.39 -0.02 2.39 16 45 H 0.00 0.22 7.35 -2.39 -0.02 0.20 16 46 H -0.01 -0.62 7.62 -2.38 -0.02 -0.64 16 47 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 49 H 0.03 1.23 6.98 -2.39 -0.02 1.21 16 50 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -87.02 375.78 4.03 -82.99 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.64 Total: 13.85 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.60 Total: 6.97 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.19 Total: -130.45 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Total: -87.02 4.03 -82.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039196708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.340 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds