Wall clock time and date at job start Sat Apr 11 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99696 * 2 1 4 4 H 1.08004 * 120.00069 * 203.03838 * 3 2 1 5 5 C 1.38814 * 119.99969 * 23.04458 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.92719 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.92808 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99566 * 7 5 3 9 9 H 1.48501 * 109.47220 * 209.99806 * 7 5 3 10 10 H 1.48498 * 109.47034 * 329.99849 * 7 5 3 11 11 C 1.46500 * 120.00520 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46725 * 90.00465 * 11 2 1 13 13 N 1.46506 * 109.46770 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99659 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00221 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99674 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.28756 * 300.69900 * 16 14 13 18 18 C 1.54377 * 110.32858 * 62.82743 * 16 14 13 19 19 N 1.48819 * 104.46865 * 95.06513 * 18 16 14 20 20 C 1.46898 * 110.97072 * 159.05295 * 19 18 16 21 21 C 1.48565 * 104.23561 * 39.50529 * 19 18 16 22 22 C 1.54257 * 110.32312 * 178.57396 * 16 14 13 23 23 H 1.09003 * 110.32447 * 0.09787 * 22 16 14 24 24 C 1.50693 * 110.32740 * 122.20619 * 22 16 14 25 25 C 1.38239 * 120.00251 * 59.72443 * 24 22 16 26 26 C 1.38237 * 120.00087 * 179.81379 * 25 24 22 27 27 C 1.38236 * 119.99835 * 0.39795 * 26 25 24 28 28 C 1.38236 * 119.99990 * 359.85461 * 27 26 25 29 29 C 1.38230 * 120.00297 * 359.95584 * 28 27 26 30 30 H 1.08990 * 109.48000 * 275.12366 * 1 2 3 31 31 H 1.09004 * 109.46692 * 155.11852 * 1 2 3 32 32 H 1.08998 * 109.47206 * 35.12797 * 1 2 3 33 33 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47555 * 210.00824 * 11 2 1 35 35 H 1.09003 * 109.46444 * 330.00770 * 11 2 1 36 36 H 1.08998 * 109.46959 * 299.99861 * 12 11 2 37 37 H 1.08997 * 109.47042 * 60.00295 * 12 11 2 38 38 H 0.96993 * 119.99966 * 359.97438 * 13 12 11 39 39 H 1.09005 * 110.41337 * 213.82712 * 18 16 14 40 40 H 1.09005 * 110.41018 * 336.26261 * 18 16 14 41 41 H 1.09005 * 109.47412 * 304.58046 * 20 19 18 42 42 H 1.08996 * 109.47284 * 64.57965 * 20 19 18 43 43 H 1.09000 * 109.47654 * 184.58398 * 20 19 18 44 44 H 1.08993 * 110.40971 * 201.71290 * 21 19 18 45 45 H 1.08997 * 110.51158 * 79.31540 * 21 19 18 46 46 H 1.07997 * 119.99644 * 359.97438 * 25 24 22 47 47 H 1.07998 * 120.00041 * 180.22693 * 26 25 24 48 48 H 1.08004 * 119.99457 * 179.83794 * 27 26 25 49 49 H 1.08001 * 119.99631 * 179.97438 * 28 27 26 50 50 H 1.07996 * 119.99766 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3660 5 6 1.5385 2.3402 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0074 0.1456 8 1 1.7987 4.5534 -1.1350 9 1 1.9756 4.9365 1.2530 10 1 3.7906 3.8579 0.0602 11 6 2.1976 -1.2687 0.0006 12 6 2.4527 -1.7108 -1.4418 13 7 3.1848 -2.9798 -1.4412 14 6 3.5222 -3.5636 -2.6082 15 8 3.2193 -3.0387 -3.6588 16 6 4.2747 -4.8692 -2.6076 17 1 5.2247 -4.7577 -2.0849 18 6 3.4263 -5.9770 -1.9472 19 7 2.7487 -6.6549 -3.0857 20 6 2.3094 -8.0047 -2.7077 21 6 3.7861 -6.7105 -4.1476 22 6 4.5122 -5.3514 -4.0535 23 1 4.0860 -4.6428 -4.7637 24 6 5.9865 -5.5267 -4.3114 25 6 6.7212 -6.4140 -3.5473 26 6 8.0729 -6.5777 -3.7864 27 6 8.6915 -5.8480 -4.7842 28 6 7.9579 -4.9569 -5.5449 29 6 6.6055 -4.7961 -5.3084 30 1 -0.3635 0.0918 1.0234 31 1 -0.3633 -0.9323 -0.4324 32 1 -0.3633 0.8405 -0.5913 33 1 -0.0156 3.0663 1.4743 34 1 3.1499 -1.1381 0.5144 35 1 1.6084 -2.0281 0.5147 36 1 1.5003 -1.8414 -1.9556 37 1 3.0417 -0.9513 -1.9558 38 1 3.4273 -3.3994 -0.6011 39 1 4.0667 -6.6787 -1.4126 40 1 2.6913 -5.5406 -1.2708 41 1 3.1614 -8.5730 -2.3345 42 1 1.5500 -7.9350 -1.9289 43 1 1.8907 -8.5080 -3.5792 44 1 3.3218 -6.8266 -5.1269 45 1 4.4826 -7.5274 -3.9587 46 1 6.2386 -6.9813 -2.7652 47 1 8.6460 -7.2736 -3.1918 48 1 9.7481 -5.9740 -4.9693 49 1 8.4415 -4.3865 -6.3242 50 1 6.0326 -4.0995 -5.9025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663280977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:38 Heat of formation + Delta-G solvation = 19.559125 kcal Electronic energy + Delta-G solvation = -28286.078728 eV Core-core repulsion = 24506.762287 eV Total energy + Delta-G solvation = -3779.316441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.76619 -39.12534 -37.93403 -36.02015 -34.17515 -33.48426 -31.54491 -31.14001 -30.71361 -28.75650 -27.79328 -26.03237 -25.81266 -23.79498 -23.00745 -22.62317 -21.77961 -20.64819 -20.61103 -19.49153 -17.54501 -17.00599 -16.64583 -16.06189 -15.83932 -15.40600 -15.19734 -14.97426 -14.71583 -14.61564 -14.26603 -13.73868 -13.70750 -13.53660 -13.28033 -13.24836 -13.14414 -12.68382 -12.46193 -12.33328 -12.28930 -11.81635 -11.78657 -11.61866 -11.45368 -11.15459 -10.99247 -10.88218 -10.85603 -10.84751 -10.57424 -10.32363 -9.93990 -9.91099 -9.59014 -9.15784 -8.95606 -8.73803 -8.65610 -8.54673 -6.78255 -5.72832 -3.21033 1.09583 1.17200 2.86781 3.37242 3.40632 3.46503 3.47873 3.52308 3.71062 4.27529 4.43704 4.51179 4.54976 4.68109 4.76380 4.83623 4.88142 4.99866 5.06549 5.09744 5.19842 5.25447 5.30190 5.33419 5.40998 5.46500 5.51661 5.60583 5.64688 5.67304 5.75431 5.79028 5.85102 5.95264 6.00201 6.21876 6.28481 6.28640 6.45413 6.48604 6.64340 6.68070 6.68736 6.77167 6.79477 6.93181 7.38412 7.72518 7.79708 7.81360 8.38422 8.50436 9.22610 9.85052 10.33244 11.31926 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002541 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.053330 B =11015.774727 C =12448.180548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.096 3.904 13 N -0.723 5.723 14 C 0.523 3.477 15 O -0.537 6.537 16 C -0.108 4.108 17 H 0.104 0.896 18 C 0.041 3.959 19 N -0.511 5.511 20 C 0.014 3.986 21 C 0.042 3.958 22 C -0.047 4.047 23 H 0.115 0.885 24 C -0.072 4.072 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.108 4.108 30 H 0.033 0.967 31 H -0.001 1.001 32 H 0.042 0.958 33 H 0.253 0.747 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -23.660 -8.467 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.374 5.374 14 C 0.308 3.692 15 O -0.414 6.414 16 C -0.130 4.130 17 H 0.122 0.878 18 C -0.088 4.088 19 N -0.235 5.235 20 C -0.135 4.135 21 C -0.086 4.086 22 C -0.066 4.066 23 H 0.133 0.867 24 C -0.072 4.072 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.126 4.126 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.462 -22.818 -9.290 27.173 hybrid contribution 1.215 0.291 0.586 1.380 sum 12.676 -22.527 -8.704 27.275 Atomic orbital electron populations 1.20834 0.82317 0.95622 0.99581 1.43784 1.01952 1.00327 1.85968 1.19202 0.98361 0.85538 1.35721 0.91345 1.25030 0.97856 0.98607 0.98022 1.70073 1.19404 1.27267 1.38393 0.86231 0.78787 0.83956 0.77426 1.21394 1.21726 1.20437 1.20834 0.96644 0.89130 0.91820 1.22404 0.95651 0.83002 1.01948 1.46029 1.58357 1.25169 1.07861 1.20122 0.79347 0.85682 0.84067 1.90660 1.54533 1.64894 1.31287 1.22153 0.99546 0.93699 0.97587 0.87780 1.23209 0.96610 0.95110 0.93834 1.65466 1.33577 1.17588 1.06840 1.22521 1.00085 0.89178 1.01725 1.23248 0.92698 0.95751 0.96879 1.20933 0.90985 0.97880 0.96811 0.86687 1.19816 0.94905 0.96500 0.96004 1.20973 0.94161 0.98769 0.99671 1.21109 0.94741 0.99798 0.98178 1.21153 0.99820 0.96996 0.96343 1.21181 0.94225 0.98479 0.99710 1.21179 0.94847 0.98964 0.97601 0.94886 0.98239 0.93955 0.93701 0.93032 0.94144 0.92228 0.91676 0.77184 0.92740 0.89170 0.95351 0.90968 0.91122 0.89634 0.93264 0.86476 0.86212 0.86241 0.86017 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.84 0.54 4.55 16 2 N -0.60 -15.11 2.92 -181.12 -0.53 -15.63 16 3 C -0.26 -7.17 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.86 7.86 -52.48 -0.41 1.45 16 5 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 6 N -0.91 -26.60 10.71 55.49 0.59 -26.00 16 7 Si 0.91 22.11 29.57 -169.99 -5.03 17.08 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.14 2.87 5.76 -4.04 -0.02 2.85 16 12 C 0.10 1.78 6.00 -4.04 -0.02 1.76 16 13 N -0.72 -10.51 5.27 -60.29 -0.32 -10.82 16 14 C 0.52 7.91 7.09 -10.99 -0.08 7.83 16 15 O -0.54 -10.36 15.25 5.56 0.08 -10.28 16 16 C -0.11 -1.18 2.88 -90.39 -0.26 -1.44 16 17 H 0.10 1.01 7.36 -51.93 -0.38 0.63 16 18 C 0.04 0.38 6.03 -2.04 -0.01 0.37 16 19 N -0.51 -5.25 5.66 -238.00 -1.35 -6.60 16 20 C 0.01 0.11 9.53 60.06 0.57 0.68 16 21 C 0.04 0.40 5.93 -2.18 -0.01 0.39 16 22 C -0.05 -0.52 2.87 -90.39 -0.26 -0.77 16 23 H 0.12 1.57 6.24 -51.93 -0.32 1.24 16 24 C -0.07 -0.73 4.74 -104.62 -0.50 -1.22 16 25 C -0.12 -1.03 8.16 -39.58 -0.32 -1.35 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 29 C -0.11 -1.11 9.68 -39.58 -0.38 -1.49 16 30 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 31 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 32 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.40 4.46 8.37 -40.82 -0.34 4.12 16 39 H 0.05 0.40 7.91 -51.93 -0.41 -0.01 16 40 H 0.09 0.87 7.53 -51.93 -0.39 0.48 16 41 H 0.03 0.19 7.98 -51.93 -0.41 -0.23 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.41 6.64 -51.93 -0.34 0.07 16 46 H 0.12 0.86 7.67 -52.49 -0.40 0.46 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.13 1.26 7.97 -52.49 -0.42 0.84 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -33.16 400.81 -11.07 -44.23 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.38 Total: 1.41 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.19 Total: 0.57 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -1.60 Total: -59.06 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.16 -11.07 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663280977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.788 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds