Wall clock time and date at job start Sat Apr 11 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99696 * 2 1 4 4 H 1.08004 * 120.00069 * 203.03838 * 3 2 1 5 5 C 1.38814 * 119.99969 * 23.04458 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.92719 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.92808 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99566 * 7 5 3 9 9 H 1.48501 * 109.47220 * 209.99806 * 7 5 3 10 10 H 1.48498 * 109.47034 * 329.99849 * 7 5 3 11 11 C 1.46500 * 120.00520 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46725 * 90.00465 * 11 2 1 13 13 N 1.46506 * 109.46770 * 180.02562 * 12 11 2 14 14 C 1.34776 * 119.99659 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00221 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99674 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.28756 * 300.69900 * 16 14 13 18 18 C 1.54377 * 110.32858 * 62.82743 * 16 14 13 19 19 N 1.48819 * 104.46865 * 95.06513 * 18 16 14 20 20 C 1.46898 * 110.97072 * 159.05295 * 19 18 16 21 21 C 1.48565 * 104.23561 * 39.50529 * 19 18 16 22 22 C 1.54257 * 110.32312 * 178.57396 * 16 14 13 23 23 H 1.09003 * 110.32447 * 0.09787 * 22 16 14 24 24 C 1.50693 * 110.32740 * 122.20619 * 22 16 14 25 25 C 1.38239 * 120.00251 * 59.72443 * 24 22 16 26 26 C 1.38237 * 120.00087 * 179.81379 * 25 24 22 27 27 C 1.38236 * 119.99835 * 0.39795 * 26 25 24 28 28 C 1.38236 * 119.99990 * 359.85461 * 27 26 25 29 29 C 1.38230 * 120.00297 * 359.95584 * 28 27 26 30 30 H 1.08990 * 109.48000 * 275.12366 * 1 2 3 31 31 H 1.09004 * 109.46692 * 155.11852 * 1 2 3 32 32 H 1.08998 * 109.47206 * 35.12797 * 1 2 3 33 33 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47555 * 210.00824 * 11 2 1 35 35 H 1.09003 * 109.46444 * 330.00770 * 11 2 1 36 36 H 1.08998 * 109.46959 * 299.99861 * 12 11 2 37 37 H 1.08997 * 109.47042 * 60.00295 * 12 11 2 38 38 H 0.96993 * 119.99966 * 359.97438 * 13 12 11 39 39 H 1.09005 * 110.41337 * 213.82712 * 18 16 14 40 40 H 1.09005 * 110.41018 * 336.26261 * 18 16 14 41 41 H 1.09005 * 109.47412 * 304.58046 * 20 19 18 42 42 H 1.08996 * 109.47284 * 64.57965 * 20 19 18 43 43 H 1.09000 * 109.47654 * 184.58398 * 20 19 18 44 44 H 1.08993 * 110.40971 * 201.71290 * 21 19 18 45 45 H 1.08997 * 110.51158 * 79.31540 * 21 19 18 46 46 H 1.07997 * 119.99644 * 359.97438 * 25 24 22 47 47 H 1.07998 * 120.00041 * 180.22693 * 26 25 24 48 48 H 1.08004 * 119.99457 * 179.83794 * 27 26 25 49 49 H 1.08001 * 119.99631 * 179.97438 * 28 27 26 50 50 H 1.07996 * 119.99766 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3660 5 6 1.5385 2.3402 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0074 0.1456 8 1 1.7987 4.5534 -1.1350 9 1 1.9756 4.9365 1.2530 10 1 3.7906 3.8579 0.0602 11 6 2.1976 -1.2687 0.0006 12 6 2.4527 -1.7108 -1.4418 13 7 3.1848 -2.9798 -1.4412 14 6 3.5222 -3.5636 -2.6082 15 8 3.2193 -3.0387 -3.6588 16 6 4.2747 -4.8692 -2.6076 17 1 5.2247 -4.7577 -2.0849 18 6 3.4263 -5.9770 -1.9472 19 7 2.7487 -6.6549 -3.0857 20 6 2.3094 -8.0047 -2.7077 21 6 3.7861 -6.7105 -4.1476 22 6 4.5122 -5.3514 -4.0535 23 1 4.0860 -4.6428 -4.7637 24 6 5.9865 -5.5267 -4.3114 25 6 6.7212 -6.4140 -3.5473 26 6 8.0729 -6.5777 -3.7864 27 6 8.6915 -5.8480 -4.7842 28 6 7.9579 -4.9569 -5.5449 29 6 6.6055 -4.7961 -5.3084 30 1 -0.3635 0.0918 1.0234 31 1 -0.3633 -0.9323 -0.4324 32 1 -0.3633 0.8405 -0.5913 33 1 -0.0156 3.0663 1.4743 34 1 3.1499 -1.1381 0.5144 35 1 1.6084 -2.0281 0.5147 36 1 1.5003 -1.8414 -1.9556 37 1 3.0417 -0.9513 -1.9558 38 1 3.4273 -3.3994 -0.6011 39 1 4.0667 -6.6787 -1.4126 40 1 2.6913 -5.5406 -1.2708 41 1 3.1614 -8.5730 -2.3345 42 1 1.5500 -7.9350 -1.9289 43 1 1.8907 -8.5080 -3.5792 44 1 3.3218 -6.8266 -5.1269 45 1 4.4826 -7.5274 -3.9587 46 1 6.2386 -6.9813 -2.7652 47 1 8.6460 -7.2736 -3.1918 48 1 9.7481 -5.9740 -4.9693 49 1 8.4415 -4.3865 -6.3242 50 1 6.0326 -4.0995 -5.9025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663280977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:37 Heat of formation + Delta-G solvation = -2.101105 kcal Electronic energy + Delta-G solvation = -28287.017986 eV Core-core repulsion = 24506.762287 eV Total energy + Delta-G solvation = -3780.255699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69064 -40.07751 -38.80892 -37.81021 -35.73756 -34.24088 -33.35795 -31.85397 -31.71450 -29.80622 -29.04860 -27.92314 -26.74302 -25.25816 -23.86603 -23.54620 -22.55581 -22.39564 -21.56902 -20.54316 -18.79982 -18.41076 -17.78649 -17.29325 -16.79975 -16.66758 -16.25673 -16.20856 -15.77589 -15.61746 -15.32618 -15.18442 -14.97609 -14.74406 -14.31378 -14.24840 -14.18445 -13.91567 -13.82545 -13.38423 -13.06561 -13.03404 -12.82334 -12.69275 -12.59702 -12.51016 -12.46544 -12.36285 -12.17752 -12.15308 -11.97107 -11.79353 -11.70431 -11.64443 -10.89900 -10.66008 -10.05704 -9.81795 -9.63714 -9.40825 -8.84528 -7.85718 -5.36271 0.42657 0.50767 1.45057 1.47669 1.55526 1.66548 2.15386 2.51820 2.84465 3.01522 3.28085 3.45538 3.55445 3.74185 3.82624 4.01853 4.04301 4.15127 4.22417 4.22814 4.29264 4.31904 4.33673 4.45037 4.54091 4.56624 4.62330 4.65938 4.67354 4.77204 4.80451 4.81811 4.92418 5.04849 5.05317 5.08112 5.12143 5.13856 5.22078 5.31978 5.51072 5.57743 5.61251 5.64141 5.68501 5.74504 5.79302 6.03954 6.12991 6.30131 6.61417 7.11800 7.30794 7.82329 8.25263 9.17393 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002541 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.053330 B =11015.774727 C =12448.180548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.267 4.267 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.118 3.882 13 N -0.711 5.711 14 C 0.519 3.481 15 O -0.585 6.585 16 C -0.097 4.097 17 H 0.124 0.876 18 C 0.045 3.955 19 N -0.539 5.539 20 C 0.014 3.986 21 C 0.049 3.951 22 C -0.044 4.044 23 H 0.078 0.922 24 C -0.082 4.082 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.129 4.129 28 C -0.127 4.127 29 C -0.133 4.133 30 H 0.013 0.987 31 H 0.030 0.970 32 H 0.012 0.988 33 H 0.249 0.751 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.415 0.585 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.137 0.863 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.133 0.867 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.497 -26.167 -7.494 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.363 5.363 14 C 0.306 3.694 15 O -0.465 6.465 16 C -0.119 4.119 17 H 0.142 0.858 18 C -0.083 4.083 19 N -0.264 5.264 20 C -0.134 4.134 21 C -0.078 4.078 22 C -0.064 4.064 23 H 0.097 0.903 24 C -0.083 4.083 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.147 4.147 28 C -0.145 4.145 29 C -0.151 4.151 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.251 0.749 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.155 0.845 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.151 0.849 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.662 -25.381 -8.298 29.995 hybrid contribution 0.566 1.000 0.220 1.170 sum 14.228 -24.381 -8.079 29.362 Atomic orbital electron populations 1.20590 0.82595 0.95915 0.97993 1.44027 1.02243 1.01595 1.86143 1.19496 0.98502 0.86839 1.34914 0.91309 1.25786 0.98603 1.01865 0.98333 1.70218 1.20687 1.27733 1.39565 0.85258 0.78496 0.79831 0.76813 1.21623 1.21738 1.19233 1.20942 0.96846 0.87581 0.92487 1.21821 0.94650 0.84122 1.00361 1.45803 1.57703 1.23762 1.09015 1.20928 0.78666 0.86690 0.83127 1.90649 1.56388 1.66412 1.33044 1.22148 0.99913 0.91617 0.98235 0.85793 1.23242 0.96681 0.94860 0.93498 1.65433 1.34184 1.19323 1.07419 1.22550 1.00783 0.88099 1.01956 1.23171 0.92738 0.95334 0.96582 1.20790 0.91844 0.97876 0.95842 0.90325 1.19784 0.94369 0.97448 0.96684 1.21164 0.94502 0.98253 0.99670 1.21468 0.94679 0.99711 0.97993 1.21485 1.00941 0.96305 0.95942 1.21388 0.93764 0.99024 1.00349 1.21253 0.95728 0.99679 0.98433 0.96901 0.95147 0.96869 0.94127 0.92223 0.91610 0.94133 0.94644 0.74852 0.89504 0.89465 0.93564 0.90767 0.90970 0.90503 0.91349 0.84529 0.83613 0.84039 0.84898 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.76 8.98 127.77 1.15 9.91 16 2 N -0.62 -31.20 2.92 -726.95 -2.12 -33.32 16 3 C -0.27 -14.89 9.65 84.03 0.81 -14.08 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.43 16 6 N -0.94 -55.79 10.71 21.65 0.23 -55.56 16 7 Si 0.97 45.83 29.57 68.60 2.03 47.86 16 8 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 C 0.15 5.74 5.76 86.38 0.50 6.23 16 12 C 0.12 4.36 6.00 86.38 0.52 4.88 16 13 N -0.71 -19.92 5.27 -463.05 -2.44 -22.36 16 14 C 0.52 15.60 7.09 87.66 0.62 16.22 16 15 O -0.58 -23.52 15.25 -3.04 -0.05 -23.56 16 16 C -0.10 -1.99 2.88 -10.65 -0.03 -2.02 16 17 H 0.12 2.05 7.36 -2.39 -0.02 2.04 16 18 C 0.05 0.72 6.03 86.40 0.52 1.24 16 19 N -0.54 -10.08 5.66 -906.89 -5.14 -15.21 16 20 C 0.01 0.18 9.53 127.69 1.22 1.40 16 21 C 0.05 0.88 5.93 86.45 0.51 1.40 16 22 C -0.04 -0.96 2.87 -10.65 -0.03 -0.99 16 23 H 0.08 2.30 6.24 -2.39 -0.01 2.29 16 24 C -0.08 -1.59 4.74 -19.87 -0.09 -1.69 16 25 C -0.12 -1.72 8.16 22.27 0.18 -1.54 16 26 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 27 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 28 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 29 C -0.13 -2.78 9.68 22.27 0.22 -2.57 16 30 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 31 H 0.03 1.30 8.03 -2.38 -0.02 1.28 16 32 H 0.01 0.70 7.34 -2.39 -0.02 0.68 16 33 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 35 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 8.37 8.37 -92.71 -0.78 7.59 16 39 H 0.09 0.86 7.91 -2.38 -0.02 0.84 16 40 H 0.09 1.45 7.53 -2.38 -0.02 1.43 16 41 H 0.05 0.44 7.98 -2.38 -0.02 0.42 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 0.95 6.64 -2.39 -0.02 0.93 16 46 H 0.14 1.41 7.67 -2.91 -0.02 1.39 16 47 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 50 H 0.11 2.50 7.97 -2.91 -0.02 2.48 16 Total: -1.00 -73.83 400.81 -0.15 -73.99 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.14 Total: 17.09 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.19 Total: 11.08 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -9.47 Total: -126.45 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.83 -0.15 -73.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663280977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.885 kcal (2) G-P(sol) polarization free energy of solvation -73.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds