Wall clock time and date at job start Sat Apr 11 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46932 * 2 1 4 4 C 1.46501 * 120.00200 * 90.00457 * 3 2 1 5 5 C 1.50693 * 109.47408 * 89.99673 * 4 3 2 6 6 O 1.21289 * 120.00003 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99964 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00114 * 359.97438 * 7 5 4 9 9 C 1.46500 * 119.99786 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.46914 * 264.71560 * 9 7 5 11 11 H 1.09000 * 112.77663 * 312.86960 * 10 9 7 12 12 C 1.53751 * 113.55377 * 83.72470 * 10 9 7 13 13 C 1.53501 * 83.25972 * 140.98858 * 12 10 9 14 14 N 1.47063 * 113.46729 * 182.08866 * 10 9 7 15 15 C 1.36943 * 136.05948 * 38.13541 * 14 10 9 16 16 H 1.07995 * 119.99443 * 352.56964 * 15 14 10 17 17 C 1.38811 * 119.99872 * 172.85113 * 15 14 10 18 18 N 1.31617 * 119.99967 * 163.58090 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 343.57631 * 17 15 14 20 20 H 1.48497 * 109.47478 * 86.25212 * 19 17 15 21 21 H 1.48507 * 109.47081 * 206.24974 * 19 17 15 22 22 H 1.48501 * 109.47675 * 326.24836 * 19 17 15 23 23 C 1.39680 * 119.99764 * 270.00015 * 3 2 1 24 24 C 1.38915 * 120.06894 * 179.72508 * 23 3 2 25 25 C 1.38111 * 119.91845 * 179.76476 * 24 23 3 26 26 C 1.38282 * 120.07475 * 0.51598 * 25 24 23 27 27 C 1.38289 * 120.15280 * 359.73753 * 26 25 24 28 28 C 1.38107 * 120.07030 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47447 * 299.99869 * 1 2 3 30 30 H 1.08996 * 109.47315 * 59.99719 * 1 2 3 31 31 H 1.09000 * 109.47620 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46726 * 240.00022 * 2 1 3 33 33 H 1.08998 * 109.47188 * 119.99749 * 2 1 3 34 34 H 1.09000 * 109.46921 * 329.99140 * 4 3 2 35 35 H 1.09004 * 109.47106 * 209.99963 * 4 3 2 36 36 H 1.09005 * 109.47059 * 275.40651 * 8 7 5 37 37 H 1.08998 * 109.47295 * 35.40391 * 8 7 5 38 38 H 1.09003 * 109.47346 * 155.41061 * 8 7 5 39 39 H 1.08996 * 109.47528 * 144.71918 * 9 7 5 40 40 H 1.09004 * 109.47522 * 24.71046 * 9 7 5 41 41 H 1.08995 * 114.39547 * 27.42926 * 12 10 9 42 42 H 1.09003 * 114.26815 * 254.53980 * 12 10 9 43 43 H 1.08991 * 113.46995 * 218.98558 * 13 12 10 44 44 H 1.09007 * 113.51883 * 88.54869 * 13 12 10 45 45 H 0.97003 * 120.00122 * 179.97438 * 18 17 15 46 46 H 1.07994 * 120.03890 * 0.02562 * 24 23 3 47 47 H 1.08002 * 119.96091 * 180.24918 * 25 24 23 48 48 H 1.08004 * 119.92325 * 179.76470 * 26 25 24 49 49 H 1.07995 * 119.96496 * 180.02562 * 27 26 25 50 50 H 1.08001 * 120.03566 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8351 1.7037 6 8 4.4237 1.1566 1.0209 7 7 4.1387 2.3772 2.8515 8 6 3.2476 3.1972 3.6759 9 6 5.5225 2.1475 3.2741 10 6 5.5693 0.9678 4.2473 11 1 4.8088 1.0324 5.0255 12 6 5.6177 -0.4019 3.5506 13 6 6.5942 -0.7422 4.6850 14 7 6.9168 0.6904 4.7669 15 6 7.9953 1.4373 5.1598 16 1 7.9967 2.5062 5.0057 17 6 9.0890 0.8197 5.7508 18 7 10.2382 1.4557 5.8343 19 14 8.9296 -0.9139 6.4278 20 1 9.1769 -1.8947 5.3406 21 1 9.9244 -1.1154 7.5119 22 1 7.5608 -1.1101 6.9694 23 6 2.2510 2.0396 -1.2097 24 6 2.7086 3.3513 -1.2114 25 6 2.9424 3.9977 -2.4093 26 6 2.7113 3.3443 -3.6059 27 6 2.2508 2.0404 -3.6078 28 6 2.0196 1.3864 -2.4135 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6878 2.0284 35 1 2.0955 3.1411 1.1384 36 1 3.2506 4.2223 3.3054 37 1 2.2353 2.7960 3.6264 38 1 3.5937 3.1835 4.7094 39 1 5.9048 3.0410 3.7676 40 1 6.1364 1.9233 2.4017 41 1 6.0714 -0.3872 2.5597 42 1 4.6799 -0.9564 3.5869 43 1 7.4340 -1.3586 4.3645 44 1 6.1048 -1.1287 5.5790 45 1 11.0024 1.0243 6.2476 46 1 2.8853 3.8634 -0.2772 47 1 3.3019 5.0161 -2.4114 48 1 2.8913 3.8535 -4.5413 49 1 2.0717 1.5329 -4.5441 50 1 1.6603 0.3679 -2.4156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691679110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:53 Heat of formation + Delta-G solvation = 78.261422 kcal Electronic energy + Delta-G solvation = -29023.435446 eV Core-core repulsion = 25246.664527 eV Total energy + Delta-G solvation = -3776.770918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.33205 -39.30139 -38.21915 -36.46175 -35.23574 -32.28448 -32.06704 -30.81224 -30.24740 -28.78595 -28.30038 -26.93434 -25.98503 -23.65282 -23.22531 -22.78850 -22.10091 -20.78767 -19.35748 -19.02840 -17.89889 -17.21096 -16.82182 -16.27151 -15.91006 -15.65935 -15.39461 -15.04804 -14.73635 -14.34628 -14.20946 -13.87462 -13.75883 -13.35375 -13.24285 -13.08536 -13.04262 -12.91434 -12.61158 -12.46433 -12.32131 -12.18811 -11.94942 -11.83468 -11.53842 -11.46197 -11.29484 -11.08465 -10.83158 -10.69200 -10.32809 -10.23312 -10.14232 -9.94118 -9.52144 -9.31075 -8.96118 -8.89303 -8.35757 -7.40015 -7.16897 -5.89021 -3.19710 1.39999 1.57015 2.72643 2.73710 3.25243 3.37659 3.45756 3.47490 3.86967 4.51403 4.56930 4.63844 4.64692 4.79893 4.85817 4.94103 4.98734 5.07317 5.09655 5.17857 5.20331 5.26477 5.30136 5.36245 5.39139 5.41925 5.51831 5.60961 5.61441 5.72154 5.74096 5.86676 5.89724 5.93324 5.95589 6.15647 6.19320 6.26807 6.41724 6.43623 6.46761 6.54304 6.59055 6.62597 6.78649 7.05601 7.11762 7.16609 7.37620 7.54831 8.32455 8.36959 8.67831 9.65400 10.34467 11.27650 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.002783 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.173356 B =10058.235863 C =10450.678548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.607 5.607 4 C 0.107 3.893 5 C 0.485 3.515 6 O -0.517 6.517 7 N -0.612 5.612 8 C 0.076 3.924 9 C 0.116 3.884 10 C 0.136 3.864 11 H 0.045 0.955 12 C -0.142 4.142 13 C 0.096 3.904 14 N -0.617 5.617 15 C -0.222 4.222 16 H 0.100 0.900 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.884 3.116 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.272 1.272 23 C 0.228 3.772 24 C -0.195 4.195 25 C -0.072 4.072 26 C -0.183 4.183 27 C -0.075 4.075 28 C -0.195 4.195 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.262 0.738 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.123 2.269 -13.304 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.316 5.316 4 C -0.021 4.021 5 C 0.270 3.730 6 O -0.392 6.392 7 N -0.348 5.348 8 C -0.067 4.067 9 C -0.007 4.007 10 C 0.028 3.972 11 H 0.062 0.938 12 C -0.180 4.180 13 C -0.029 4.029 14 N -0.345 5.345 15 C -0.348 4.348 16 H 0.118 0.882 17 C -0.182 4.182 18 N -0.566 5.566 19 Si 0.715 3.285 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.198 1.198 23 C 0.127 3.873 24 C -0.217 4.217 25 C -0.091 4.091 26 C -0.203 4.203 27 C -0.093 4.093 28 C -0.217 4.217 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.363 1.944 -13.364 26.986 hybrid contribution 0.128 -0.879 0.925 1.283 sum -23.236 1.065 -12.439 26.377 Atomic orbital electron populations 1.22241 0.96360 1.01978 1.02376 1.21375 0.93394 0.82033 1.03273 1.46093 1.70468 1.13275 1.01755 1.21329 0.94102 0.99521 0.87126 1.21347 0.90470 0.80263 0.80905 1.90728 1.57618 1.37715 1.53117 1.47937 1.13370 1.51081 1.22369 1.21801 0.93717 0.94673 0.96538 1.21793 0.80337 0.99119 0.99455 1.22393 0.88419 0.93169 0.93222 0.93764 1.23532 0.98398 0.97083 0.98994 1.22568 0.96375 0.88534 0.95463 1.46217 1.10079 1.01390 1.76781 1.18601 0.90139 0.92221 1.33814 0.88246 1.24665 0.95284 0.97658 1.00589 1.69761 1.00382 1.38153 1.48258 0.86811 0.77113 0.85751 0.78815 1.21380 1.22786 1.19784 1.17759 0.92738 0.91216 0.85577 1.20635 1.08260 0.94253 0.98542 1.20864 0.96998 0.99223 0.92010 1.20869 1.05922 0.95821 0.97716 1.20859 0.96875 0.94533 0.97079 1.20643 1.09487 1.00504 0.91074 0.92579 0.92275 0.91733 0.90468 0.90747 0.88075 0.88061 0.92630 0.91702 0.90347 0.90683 0.89138 0.89300 0.92733 0.93026 0.94293 0.92762 0.86623 0.86396 0.86718 0.86446 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.12 1.12 5.88 -4.04 -0.02 1.09 16 3 N -0.61 -6.49 2.10 -173.12 -0.36 -6.86 16 4 C 0.11 1.03 4.27 -5.20 -0.02 1.01 16 5 C 0.48 6.68 7.74 -10.99 -0.09 6.60 16 6 O -0.52 -9.39 15.84 5.55 0.09 -9.31 16 7 N -0.61 -8.17 2.87 -181.57 -0.52 -8.69 16 8 C 0.08 0.68 10.16 59.84 0.61 1.29 16 9 C 0.12 2.04 5.37 -4.04 -0.02 2.02 16 10 C 0.14 2.64 4.32 -72.26 -0.31 2.32 16 11 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.14 -2.69 7.94 -26.08 -0.21 -2.90 16 13 C 0.10 2.13 5.62 -8.50 -0.05 2.08 16 14 N -0.62 -15.13 3.49 -176.83 -0.62 -15.74 16 15 C -0.22 -6.32 10.97 -15.06 -0.17 -6.49 16 16 H 0.10 2.94 8.06 -52.49 -0.42 2.52 16 17 C 0.02 0.45 5.50 -17.43 -0.10 0.36 16 18 N -0.92 -28.92 13.97 55.49 0.78 -28.14 16 19 Si 0.88 23.14 25.10 -169.99 -4.27 18.87 16 20 H -0.29 -7.42 6.76 56.52 0.38 -7.04 16 21 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 22 H -0.27 -6.86 6.05 56.52 0.34 -6.52 16 23 C 0.23 2.70 6.55 -83.79 -0.55 2.16 16 24 C -0.19 -2.28 9.21 -39.38 -0.36 -2.64 16 25 C -0.07 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.18 -1.89 10.04 -39.55 -0.40 -2.28 16 27 C -0.07 -0.76 10.04 -39.61 -0.40 -1.16 16 28 C -0.19 -2.14 9.21 -39.38 -0.36 -2.50 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.72 6.20 -51.93 -0.32 0.40 16 33 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.10 0.73 7.34 -51.93 -0.38 0.35 16 35 H 0.10 0.82 6.15 -51.93 -0.32 0.50 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 38 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 39 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 40 H 0.09 1.85 7.08 -51.93 -0.37 1.48 16 41 H 0.09 1.81 8.00 -51.93 -0.42 1.40 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.21 6.11 -51.93 -0.32 0.89 16 44 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 45 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 46 H 0.12 1.26 6.14 -52.49 -0.32 0.94 16 47 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 50 H 0.12 1.14 6.14 -52.49 -0.32 0.82 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -35.09 397.00 -9.57 -44.66 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.19 Total: 0.25 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.46 Total: -1.03 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.73 Total: -59.43 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.27 Total: 18.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.09 -9.57 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691679110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.921 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds