Wall clock time and date at job start Sat Apr 11 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00007 * 2 1 4 4 C 1.46894 * 110.99891 * 123.95274 * 2 1 3 5 5 C 1.53004 * 109.46957 * 170.00265 * 4 2 1 6 6 C 1.50700 * 109.46862 * 180.02562 * 5 4 2 7 7 C 1.37982 * 120.06799 * 261.55684 * 6 5 4 8 8 C 1.38341 * 120.14373 * 180.02562 * 7 6 5 9 9 C 1.38381 * 120.29019 * 359.97072 * 8 7 6 10 10 C 1.37939 * 120.14619 * 359.75249 * 9 8 7 11 11 C 1.39553 * 120.07899 * 81.53846 * 6 5 4 12 12 C 1.47849 * 120.14109 * 359.97438 * 11 6 5 13 13 O 1.21541 * 120.00194 * 354.70424 * 12 11 6 14 14 N 1.34781 * 119.99536 * 174.70236 * 12 11 6 15 15 C 1.46501 * 119.99648 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47131 * 180.02562 * 15 14 12 17 17 H 1.08999 * 112.74187 * 56.23311 * 16 15 14 18 18 C 1.53496 * 113.46850 * 187.06078 * 16 15 14 19 19 C 1.53495 * 83.34787 * 140.84521 * 18 16 15 20 20 N 1.47064 * 87.98356 * 333.93158 * 19 18 16 21 21 C 1.36945 * 136.05943 * 207.15787 * 20 19 18 22 22 H 1.07996 * 120.00116 * 179.97438 * 21 20 19 23 23 C 1.38810 * 119.99587 * 359.94692 * 21 20 19 24 24 N 1.31617 * 120.00408 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99729 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47162 * 60.00266 * 25 23 21 27 27 H 1.48503 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47244 * 299.99590 * 25 23 21 29 29 H 1.09001 * 109.46777 * 296.04663 * 1 2 3 30 30 H 1.09002 * 109.47198 * 56.04345 * 1 2 3 31 31 H 1.08991 * 109.47035 * 176.05028 * 1 2 3 32 32 H 1.08999 * 109.47094 * 183.95644 * 3 2 1 33 33 H 1.09005 * 109.47042 * 303.95793 * 3 2 1 34 34 H 1.08995 * 109.47499 * 63.94930 * 3 2 1 35 35 H 1.08993 * 109.47285 * 49.99938 * 4 2 1 36 36 H 1.09005 * 109.47183 * 289.99880 * 4 2 1 37 37 H 1.08993 * 109.47390 * 59.99737 * 5 4 2 38 38 H 1.09000 * 109.46432 * 299.99610 * 5 4 2 39 39 H 1.08003 * 119.93233 * 359.97438 * 7 6 5 40 40 H 1.07995 * 119.85613 * 179.97438 * 8 7 6 41 41 H 1.08007 * 119.92490 * 180.02562 * 9 8 7 42 42 H 1.08002 * 120.07293 * 180.27788 * 10 9 8 43 43 H 0.96995 * 119.99973 * 0.02562 * 14 12 11 44 44 H 1.09007 * 109.47236 * 59.99642 * 15 14 12 45 45 H 1.09001 * 109.47127 * 299.99788 * 15 14 12 46 46 H 1.09007 * 114.20343 * 254.43354 * 18 16 15 47 47 H 1.08999 * 114.20957 * 27.25565 * 18 16 15 48 48 H 1.08994 * 113.46906 * 219.15485 * 19 18 16 49 49 H 1.09000 * 113.46803 * 88.70462 * 19 18 16 50 50 H 0.96996 * 120.00263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0444 -1.7416 2.1371 7 6 4.6447 -1.0873 3.1932 8 6 5.1414 -1.8076 4.2648 9 6 5.0393 -3.1875 4.2856 10 6 4.4364 -3.8534 3.2388 11 6 3.9380 -3.1329 2.1520 12 6 3.2950 -3.8405 1.0242 13 8 2.7725 -3.2072 0.1280 14 7 3.2885 -5.1879 0.9899 15 6 2.6519 -5.8890 -0.1279 16 6 2.7834 -7.3995 0.0762 17 1 2.3698 -7.7337 1.0277 18 6 2.2995 -8.2232 -1.1252 19 6 3.5144 -9.0984 -0.7874 20 7 4.1376 -7.9102 -0.1853 21 6 5.4162 -7.4716 0.0344 22 1 5.5854 -6.5203 0.5167 23 6 6.4947 -8.2503 -0.3624 24 7 6.2885 -9.4097 -0.9502 25 14 8.2388 -7.6524 -0.0621 26 1 8.4521 -7.4599 1.3948 27 1 9.2024 -8.6598 -0.5741 28 1 8.4485 -6.3629 -0.7679 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0251 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8724 0.9232 35 1 1.5090 -1.7405 1.1756 36 1 1.7975 -0.2247 2.0628 37 1 3.9909 0.0194 0.9323 38 1 3.7023 -1.4965 0.0451 39 1 4.7279 -0.0105 3.1829 40 1 5.6107 -1.2907 5.0887 41 1 5.4287 -3.7439 5.1254 42 1 4.3533 -4.9300 3.2584 43 1 3.7052 -5.6932 1.7053 44 1 3.1393 -5.6041 -1.0604 45 1 1.5967 -5.6192 -0.1724 46 1 1.3384 -8.7144 -0.9724 47 1 2.3739 -7.7052 -2.0814 48 1 4.0422 -9.4667 -1.6670 49 1 3.2950 -9.8858 -0.0663 50 1 7.0421 -9.9539 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038545461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:52 Heat of formation + Delta-G solvation = 58.007751 kcal Electronic energy + Delta-G solvation = -28953.970605 eV Core-core repulsion = 25176.321422 eV Total energy + Delta-G solvation = -3777.649183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32554 -38.59461 -37.73291 -37.46960 -34.31739 -32.83242 -32.23659 -31.27971 -28.95173 -28.04003 -27.65837 -27.43406 -24.71000 -23.59837 -23.47060 -22.21061 -21.53120 -20.60415 -20.19925 -19.22542 -17.73462 -16.59603 -16.07797 -15.93595 -15.48732 -15.30157 -15.24343 -14.87338 -14.69864 -14.64957 -14.37446 -13.97509 -13.64204 -13.24793 -13.12873 -12.98114 -12.80317 -12.65169 -12.43065 -11.92407 -11.87007 -11.76153 -11.62621 -11.55666 -11.48090 -11.10950 -11.01361 -10.98742 -10.77250 -10.63139 -10.57792 -9.97090 -9.84462 -9.42082 -9.13925 -9.00885 -8.81577 -8.80172 -8.46074 -8.31336 -6.90692 -5.77499 -3.10154 0.90553 1.29873 3.09633 3.37959 3.43355 3.43654 3.55652 3.86361 4.00529 4.42958 4.72608 4.82351 4.84333 4.99775 5.07329 5.10085 5.19498 5.23505 5.29143 5.34079 5.39769 5.43759 5.50418 5.57120 5.58200 5.61463 5.70829 5.76998 5.82475 5.85339 5.89176 5.92252 6.09939 6.14496 6.25807 6.30022 6.34109 6.37429 6.40884 6.59749 6.62976 6.74008 6.85519 6.93332 7.03774 7.07407 7.22159 7.39122 7.57192 7.93357 7.96949 8.60249 9.02211 9.69655 10.62281 11.39608 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.003585 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.052494 B = 7808.868902 C = 9186.656610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.540 5.540 3 C 0.021 3.979 4 C 0.077 3.923 5 C -0.082 4.082 6 C -0.025 4.025 7 C -0.131 4.131 8 C -0.097 4.097 9 C -0.132 4.132 10 C -0.081 4.081 11 C -0.127 4.127 12 C 0.546 3.454 13 O -0.528 6.528 14 N -0.709 5.709 15 C 0.124 3.876 16 C 0.126 3.874 17 H 0.047 0.953 18 C -0.161 4.161 19 C 0.152 3.848 20 N -0.601 5.601 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.401 0.599 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.024 0.976 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 16.218 8.590 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.264 5.264 3 C -0.127 4.127 4 C -0.051 4.051 5 C -0.120 4.120 6 C -0.026 4.026 7 C -0.149 4.149 8 C -0.115 4.115 9 C -0.150 4.150 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.333 3.667 13 O -0.407 6.407 14 N -0.359 5.359 15 C -0.001 4.001 16 C 0.019 3.981 17 H 0.064 0.936 18 C -0.200 4.200 19 C 0.026 3.974 20 N -0.327 5.327 21 C -0.342 4.342 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.236 0.764 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.042 0.958 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.674 16.377 7.472 19.982 hybrid contribution 1.108 0.271 1.518 1.899 sum -7.565 16.647 8.989 20.376 Atomic orbital electron populations 1.22339 0.87497 1.02385 0.99805 1.61864 1.07551 1.13114 1.43827 1.22445 1.01149 0.89199 0.99914 1.21962 0.95046 0.98436 0.89610 1.20790 0.94616 0.98611 0.97944 1.19948 0.95047 0.92249 0.95379 1.21017 1.00145 0.99864 0.93867 1.21289 0.98034 0.94281 0.97938 1.21091 1.00373 0.94548 0.98998 1.21408 0.95666 1.00039 0.92890 1.19954 1.03329 0.93788 0.95973 1.18254 0.80164 0.82414 0.85840 1.90753 1.45661 1.65753 1.38519 1.45925 1.58026 1.05750 1.26228 1.21801 0.96319 0.92411 0.89551 1.22421 0.88346 0.90889 0.96478 0.93560 1.23658 0.98334 0.99857 0.98116 1.22024 0.88413 0.89884 0.97087 1.45661 0.98758 1.18935 1.69335 1.18794 0.79842 1.01761 1.33774 0.90284 1.24757 0.97628 0.96671 1.01205 1.69812 1.29753 1.12062 1.44888 0.86280 0.84450 0.77727 0.77832 1.21195 1.21539 1.21059 0.96226 0.91618 0.91199 0.91179 0.91698 0.96154 0.89691 0.96183 0.92227 0.87050 0.85804 0.85857 0.85530 0.85371 0.76401 0.90967 0.92228 0.92376 0.90169 0.90993 0.95789 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.57 60.07 0.57 0.88 16 2 N -0.54 -6.84 5.02 -251.26 -1.26 -8.10 16 3 C 0.02 0.22 9.32 60.06 0.56 0.78 16 4 C 0.08 1.02 4.46 -3.83 -0.02 1.00 16 5 C -0.08 -1.12 4.53 -27.88 -0.13 -1.24 16 6 C -0.02 -0.33 5.17 -104.23 -0.54 -0.87 16 7 C -0.13 -1.46 9.66 -39.64 -0.38 -1.84 16 8 C -0.10 -1.00 10.04 -39.49 -0.40 -1.40 16 9 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 10 C -0.08 -1.06 9.53 -39.19 -0.37 -1.44 16 11 C -0.13 -1.89 5.87 -104.97 -0.62 -2.50 16 12 C 0.55 9.31 7.63 -12.33 -0.09 9.22 16 13 O -0.53 -9.94 11.58 5.33 0.06 -9.87 16 14 N -0.71 -12.10 5.28 -61.25 -0.32 -12.43 16 15 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 16 C 0.13 2.41 4.10 -72.39 -0.30 2.11 16 17 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.16 -2.91 8.03 -26.22 -0.21 -3.12 16 19 C 0.15 3.45 7.39 -8.50 -0.06 3.38 16 20 N -0.60 -14.52 3.65 -176.99 -0.65 -15.17 16 21 C -0.21 -5.72 10.55 -15.06 -0.16 -5.88 16 22 H 0.08 2.03 7.50 -52.49 -0.39 1.64 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.92 -26.89 11.51 55.49 0.64 -26.25 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.07 0.69 6.47 -51.93 -0.34 0.36 16 33 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 1.29 6.47 -51.93 -0.34 0.96 16 36 H 0.02 0.25 8.12 -51.93 -0.42 -0.18 16 37 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 38 H 0.11 1.86 5.97 -51.93 -0.31 1.55 16 39 H 0.12 1.11 8.05 -52.48 -0.42 0.68 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.13 1.58 6.44 -52.49 -0.34 1.24 16 43 H 0.40 6.58 6.44 -40.82 -0.26 6.32 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 47 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 48 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -31.41 397.75 -11.37 -42.78 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.15 Total: 6.89 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.66 Total: -0.85 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.59 Total: -61.94 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.41 -11.37 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038545461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.786 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds