Wall clock time and date at job start Sat Apr 11 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00007 * 2 1 4 4 C 1.46894 * 110.99891 * 123.95274 * 2 1 3 5 5 C 1.53004 * 109.46957 * 170.00265 * 4 2 1 6 6 C 1.50700 * 109.46862 * 180.02562 * 5 4 2 7 7 C 1.37982 * 120.06799 * 261.55684 * 6 5 4 8 8 C 1.38341 * 120.14373 * 180.02562 * 7 6 5 9 9 C 1.38381 * 120.29019 * 359.97072 * 8 7 6 10 10 C 1.37939 * 120.14619 * 359.75249 * 9 8 7 11 11 C 1.39553 * 120.07899 * 81.53846 * 6 5 4 12 12 C 1.47849 * 120.14109 * 359.97438 * 11 6 5 13 13 O 1.21541 * 120.00194 * 354.70424 * 12 11 6 14 14 N 1.34781 * 119.99536 * 174.70236 * 12 11 6 15 15 C 1.46501 * 119.99648 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47131 * 180.02562 * 15 14 12 17 17 H 1.08999 * 112.74187 * 56.23311 * 16 15 14 18 18 C 1.53496 * 113.46850 * 187.06078 * 16 15 14 19 19 C 1.53495 * 83.34787 * 140.84521 * 18 16 15 20 20 N 1.47064 * 87.98356 * 333.93158 * 19 18 16 21 21 C 1.36945 * 136.05943 * 207.15787 * 20 19 18 22 22 H 1.07996 * 120.00116 * 179.97438 * 21 20 19 23 23 C 1.38810 * 119.99587 * 359.94692 * 21 20 19 24 24 N 1.31617 * 120.00408 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99729 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47162 * 60.00266 * 25 23 21 27 27 H 1.48503 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47244 * 299.99590 * 25 23 21 29 29 H 1.09001 * 109.46777 * 296.04663 * 1 2 3 30 30 H 1.09002 * 109.47198 * 56.04345 * 1 2 3 31 31 H 1.08991 * 109.47035 * 176.05028 * 1 2 3 32 32 H 1.08999 * 109.47094 * 183.95644 * 3 2 1 33 33 H 1.09005 * 109.47042 * 303.95793 * 3 2 1 34 34 H 1.08995 * 109.47499 * 63.94930 * 3 2 1 35 35 H 1.08993 * 109.47285 * 49.99938 * 4 2 1 36 36 H 1.09005 * 109.47183 * 289.99880 * 4 2 1 37 37 H 1.08993 * 109.47390 * 59.99737 * 5 4 2 38 38 H 1.09000 * 109.46432 * 299.99610 * 5 4 2 39 39 H 1.08003 * 119.93233 * 359.97438 * 7 6 5 40 40 H 1.07995 * 119.85613 * 179.97438 * 8 7 6 41 41 H 1.08007 * 119.92490 * 180.02562 * 9 8 7 42 42 H 1.08002 * 120.07293 * 180.27788 * 10 9 8 43 43 H 0.96995 * 119.99973 * 0.02562 * 14 12 11 44 44 H 1.09007 * 109.47236 * 59.99642 * 15 14 12 45 45 H 1.09001 * 109.47127 * 299.99788 * 15 14 12 46 46 H 1.09007 * 114.20343 * 254.43354 * 18 16 15 47 47 H 1.08999 * 114.20957 * 27.25565 * 18 16 15 48 48 H 1.08994 * 113.46906 * 219.15485 * 19 18 16 49 49 H 1.09000 * 113.46803 * 88.70462 * 19 18 16 50 50 H 0.96996 * 120.00263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0444 -1.7416 2.1371 7 6 4.6447 -1.0873 3.1932 8 6 5.1414 -1.8076 4.2648 9 6 5.0393 -3.1875 4.2856 10 6 4.4364 -3.8534 3.2388 11 6 3.9380 -3.1329 2.1520 12 6 3.2950 -3.8405 1.0242 13 8 2.7725 -3.2072 0.1280 14 7 3.2885 -5.1879 0.9899 15 6 2.6519 -5.8890 -0.1279 16 6 2.7834 -7.3995 0.0762 17 1 2.3698 -7.7337 1.0277 18 6 2.2995 -8.2232 -1.1252 19 6 3.5144 -9.0984 -0.7874 20 7 4.1376 -7.9102 -0.1853 21 6 5.4162 -7.4716 0.0344 22 1 5.5854 -6.5203 0.5167 23 6 6.4947 -8.2503 -0.3624 24 7 6.2885 -9.4097 -0.9502 25 14 8.2388 -7.6524 -0.0621 26 1 8.4521 -7.4599 1.3948 27 1 9.2024 -8.6598 -0.5741 28 1 8.4485 -6.3629 -0.7679 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0251 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8724 0.9232 35 1 1.5090 -1.7405 1.1756 36 1 1.7975 -0.2247 2.0628 37 1 3.9909 0.0194 0.9323 38 1 3.7023 -1.4965 0.0451 39 1 4.7279 -0.0105 3.1829 40 1 5.6107 -1.2907 5.0887 41 1 5.4287 -3.7439 5.1254 42 1 4.3533 -4.9300 3.2584 43 1 3.7052 -5.6932 1.7053 44 1 3.1393 -5.6041 -1.0604 45 1 1.5967 -5.6192 -0.1724 46 1 1.3384 -8.7144 -0.9724 47 1 2.3739 -7.7052 -2.0814 48 1 4.0422 -9.4667 -1.6670 49 1 3.2950 -9.8858 -0.0663 50 1 7.0421 -9.9539 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038545461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:51 Heat of formation + Delta-G solvation = 38.161277 kcal Electronic energy + Delta-G solvation = -28954.831213 eV Core-core repulsion = 25176.321422 eV Total energy + Delta-G solvation = -3778.509791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47390 -40.08746 -39.05599 -38.38990 -35.67412 -34.27050 -33.82514 -32.31578 -30.00043 -29.87016 -28.91605 -28.44783 -25.70723 -25.38914 -24.67148 -23.57097 -22.58082 -21.69043 -21.45682 -20.89653 -19.06592 -18.27437 -17.20945 -17.09487 -16.97369 -16.51998 -16.27232 -16.21436 -15.83815 -15.72498 -15.61809 -15.46641 -15.13317 -14.73834 -14.38679 -13.89493 -13.88681 -13.81662 -13.52811 -13.31318 -13.20002 -12.95001 -12.77427 -12.71973 -12.68663 -12.61493 -12.49104 -12.40796 -12.34674 -11.95955 -11.83060 -11.69566 -11.63537 -11.08792 -10.84192 -10.50762 -10.06643 -9.84305 -9.66209 -9.22506 -8.88638 -7.87102 -5.18592 -0.08649 0.38901 1.42927 1.45866 1.51110 1.94593 2.25965 2.47713 2.85690 3.08834 3.34855 3.44236 3.74619 3.82905 3.92015 3.94595 4.07208 4.17328 4.22127 4.24551 4.33644 4.35007 4.46543 4.47959 4.52984 4.61798 4.65789 4.68687 4.70269 4.73161 4.86525 4.90255 4.95691 4.97906 5.02016 5.05458 5.09673 5.14699 5.23709 5.33188 5.38390 5.49823 5.53572 5.60407 5.64244 5.74984 5.96925 5.97763 6.13191 6.18835 6.60366 6.94399 7.28804 7.64655 8.64481 9.30331 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.003585 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.052494 B = 7808.868902 C = 9186.656610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.566 5.566 3 C 0.022 3.978 4 C 0.087 3.913 5 C -0.074 4.074 6 C -0.039 4.039 7 C -0.130 4.130 8 C -0.086 4.086 9 C -0.133 4.133 10 C -0.093 4.093 11 C -0.153 4.153 12 C 0.542 3.458 13 O -0.552 6.552 14 N -0.711 5.711 15 C 0.135 3.865 16 C 0.133 3.867 17 H 0.068 0.932 18 C -0.134 4.134 19 C 0.144 3.856 20 N -0.628 5.628 21 C -0.207 4.207 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.965 3.035 26 H -0.272 1.272 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.403 0.597 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.035 0.965 49 H 0.023 0.977 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 18.538 10.934 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.290 5.290 3 C -0.125 4.125 4 C -0.040 4.040 5 C -0.112 4.112 6 C -0.040 4.040 7 C -0.147 4.147 8 C -0.104 4.104 9 C -0.151 4.151 10 C -0.111 4.111 11 C -0.156 4.156 12 C 0.331 3.669 13 O -0.433 6.433 14 N -0.362 5.362 15 C 0.010 3.990 16 C 0.027 3.973 17 H 0.086 0.914 18 C -0.173 4.173 19 C 0.018 3.982 20 N -0.355 5.355 21 C -0.335 4.335 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.223 1.223 28 H -0.213 1.213 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.146 0.854 43 H 0.239 0.761 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.035 18.721 9.840 22.998 hybrid contribution 1.144 -0.381 0.825 1.461 sum -7.891 18.340 10.666 22.635 Atomic orbital electron populations 1.22337 0.86641 1.01925 1.00963 1.61850 1.08626 1.14643 1.43859 1.22471 1.01118 0.87962 1.00987 1.21773 0.94563 0.97343 0.90369 1.20647 0.95128 0.98920 0.96475 1.20084 0.95847 0.91829 0.96254 1.21332 0.99016 1.01276 0.93116 1.21732 0.96422 0.93986 0.98273 1.21443 0.99435 0.95355 0.98871 1.21525 0.96199 1.00223 0.93188 1.19881 1.05213 0.94523 0.96017 1.18715 0.79735 0.82204 0.86292 1.90744 1.46731 1.66130 1.39680 1.45907 1.58279 1.06017 1.25965 1.21555 0.97051 0.91791 0.88614 1.22563 0.85582 0.91482 0.97715 0.91428 1.23478 0.98257 0.97983 0.97579 1.22038 0.90212 0.90249 0.95705 1.45972 0.99718 1.20028 1.69739 1.19127 0.81241 1.01471 1.31658 0.89832 1.25497 1.01088 0.97250 1.02330 1.69994 1.29945 1.13334 1.47002 0.85346 0.80405 0.76671 0.78166 1.19808 1.22258 1.21254 0.95102 0.90291 0.92556 0.91208 0.90652 0.94962 0.92445 0.95064 0.90395 0.90759 0.83185 0.82255 0.83058 0.85392 0.76081 0.94137 0.90371 0.88187 0.90359 0.94619 0.95902 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.57 127.69 1.22 1.83 16 2 N -0.57 -14.02 5.02 -948.85 -4.76 -18.78 16 3 C 0.02 0.42 9.32 127.69 1.19 1.61 16 4 C 0.09 2.28 4.46 86.31 0.39 2.67 16 5 C -0.07 -1.99 4.53 29.85 0.14 -1.86 16 6 C -0.04 -1.00 5.17 -19.61 -0.10 -1.10 16 7 C -0.13 -2.50 9.66 22.23 0.21 -2.28 16 8 C -0.09 -1.43 10.04 22.33 0.22 -1.21 16 9 C -0.13 -2.57 10.03 22.23 0.22 -2.35 16 10 C -0.09 -2.32 9.53 22.53 0.21 -2.10 16 11 C -0.15 -4.51 5.87 -20.09 -0.12 -4.63 16 12 C 0.54 18.91 7.63 86.79 0.66 19.57 16 13 O -0.55 -21.64 11.58 -3.85 -0.04 -21.69 16 14 N -0.71 -24.49 5.28 -465.97 -2.46 -26.95 16 15 C 0.13 4.84 5.52 86.38 0.48 5.31 16 16 C 0.13 4.94 4.10 41.79 0.17 5.11 16 17 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.13 -4.68 8.03 30.93 0.25 -4.43 16 19 C 0.14 6.61 7.39 83.18 0.62 7.23 16 20 N -0.63 -30.63 3.65 -713.86 -2.61 -33.24 16 21 C -0.21 -11.17 10.55 84.03 0.89 -10.28 16 22 H 0.08 4.33 7.50 -2.91 -0.02 4.30 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 24 N -0.95 -57.65 11.51 21.65 0.25 -57.40 16 25 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 32 H 0.07 1.27 6.47 -2.39 -0.02 1.26 16 33 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 1.81 6.47 -2.39 -0.02 1.79 16 36 H 0.03 0.73 8.12 -2.38 -0.02 0.71 16 37 H 0.08 1.72 6.43 -2.39 -0.02 1.71 16 38 H 0.07 2.58 5.97 -2.39 -0.01 2.56 16 39 H 0.15 2.06 8.05 -2.91 -0.02 2.04 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.13 3.08 6.44 -2.91 -0.02 3.06 16 43 H 0.40 13.26 6.44 -92.71 -0.60 12.66 16 44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 47 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 48 H 0.04 1.89 7.12 -2.39 -0.02 1.87 16 49 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.94 397.75 -0.15 -71.09 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.33 Total: 29.20 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 7.12 Total: 9.64 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -9.58 Total: -136.37 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.04 Total: -21.69 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.94 -0.15 -71.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038545461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.249 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds