Wall clock time and date at job start Sat Apr 11 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00288 * 2 1 4 4 C 1.39051 * 119.99695 * 180.02562 * 2 1 3 5 5 C 1.39220 * 119.92954 * 5.95525 * 4 2 1 6 6 C 1.37617 * 120.06815 * 179.97438 * 5 4 2 7 7 C 1.39796 * 119.92815 * 0.02830 * 6 5 4 8 8 C 1.47517 * 120.06493 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00329 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99726 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99933 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.16485 * 34.33497 * 11 10 8 13 13 C 1.50120 * 109.21143 * 153.67465 * 11 10 8 14 14 C 1.52527 * 105.42114 * 218.02880 * 13 11 10 15 15 C 1.46236 * 114.27503 * 270.59796 * 14 13 11 16 16 N 1.50166 * 107.53908 * 58.40236 * 15 14 13 17 17 C 1.36938 * 120.53991 * 109.60901 * 16 15 14 18 18 H 1.07998 * 120.00240 * 159.72350 * 17 16 15 19 19 C 1.38814 * 119.99755 * 339.72306 * 17 16 15 20 20 N 1.31618 * 120.00214 * 340.70092 * 19 17 16 21 21 Si 1.86797 * 119.99820 * 160.69863 * 19 17 16 22 22 H 1.48497 * 109.47178 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47254 * 119.99846 * 21 19 17 24 24 H 1.48492 * 109.47467 * 240.00143 * 21 19 17 25 25 C 1.43435 * 118.92029 * 289.59264 * 16 15 14 26 26 C 1.54839 * 109.21007 * 274.99900 * 11 10 8 27 27 C 1.39795 * 119.86256 * 0.26895 * 7 6 5 28 28 C 1.37605 * 119.93084 * 359.42700 * 27 7 6 29 29 H 1.08995 * 109.47852 * 174.32905 * 1 2 3 30 30 H 1.09005 * 109.46809 * 294.33306 * 1 2 3 31 31 H 1.09001 * 109.47310 * 54.32446 * 1 2 3 32 32 H 1.09002 * 109.46780 * 269.99901 * 3 2 1 33 33 H 1.09001 * 109.47231 * 29.99770 * 3 2 1 34 34 H 1.08999 * 109.46927 * 150.00262 * 3 2 1 35 35 H 1.07993 * 119.96770 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.03216 * 180.02562 * 6 5 4 37 37 H 0.96999 * 120.00363 * 359.97438 * 10 8 7 38 38 H 1.08998 * 110.25103 * 99.05212 * 13 11 10 39 39 H 1.09000 * 110.24975 * 336.99964 * 13 11 10 40 40 H 1.08994 * 108.52512 * 149.35467 * 14 13 11 41 41 H 1.09004 * 108.52266 * 31.83486 * 14 13 11 42 42 H 1.09004 * 109.84506 * 177.91593 * 15 14 13 43 43 H 1.09004 * 109.84723 * 298.89290 * 15 14 13 44 44 H 0.96996 * 119.99791 * 180.02562 * 20 19 17 45 45 H 1.09002 * 108.15543 * 213.28139 * 25 16 15 46 46 H 1.09000 * 108.16303 * 330.05804 * 25 16 15 47 47 H 1.09008 * 109.35863 * 80.58244 * 26 11 10 48 48 H 1.09002 * 109.24777 * 320.92481 * 26 11 10 49 49 H 1.08000 * 120.03249 * 179.72664 * 27 7 6 50 50 H 1.08000 * 119.96604 * 180.29411 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2043 -0.0005 5 6 1.4681 -2.4057 -0.1263 6 6 2.1533 -3.5992 -0.1277 7 6 3.5456 -3.6042 -0.0021 8 6 4.2832 -4.8818 -0.0038 9 8 3.6802 -5.9319 -0.1140 10 7 5.6256 -4.8850 0.1168 11 6 6.3581 -6.1537 0.1157 12 1 5.8566 -6.8559 -0.5504 13 6 7.7559 -5.9167 -0.3780 14 6 8.0976 -7.1356 -1.2288 15 6 8.7050 -8.2377 -0.4838 16 7 7.7419 -8.6387 0.5964 17 6 7.0752 -9.8327 0.5261 18 1 6.6522 -10.2685 1.4191 19 6 6.9431 -10.4831 -0.6932 20 7 7.1034 -9.8153 -1.8160 21 14 6.5377 -12.3059 -0.7403 22 1 6.4083 -12.8202 0.6468 23 1 5.2576 -12.5098 -1.4647 24 1 7.6244 -13.0368 -1.4402 25 6 7.5321 -7.7508 1.7032 26 6 6.3727 -6.7348 1.5508 27 6 4.2370 -2.3964 0.1302 28 6 3.5467 -1.2060 0.1246 29 1 -0.3634 -1.0225 -0.1015 30 1 -0.3633 0.4235 0.9364 31 1 -0.3634 0.5993 -0.8348 32 1 2.3792 1.5833 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1382 0.5138 35 1 0.3926 -2.4012 -0.2228 36 1 1.6160 -4.5309 -0.2256 37 1 6.1068 -4.0473 0.2044 38 1 8.4449 -5.8384 0.4629 39 1 7.7935 -5.0113 -0.9838 40 1 8.7873 -6.8272 -2.0145 41 1 7.1829 -7.4977 -1.6983 42 1 8.8847 -9.0807 -1.1510 43 1 9.6446 -7.9101 -0.0388 44 1 7.0106 -10.2697 -2.6679 45 1 7.3409 -8.3538 2.5908 46 1 8.4520 -7.1898 1.8679 47 1 5.4249 -7.2360 1.7474 48 1 6.5073 -5.9232 2.2658 49 1 5.3122 -2.3973 0.2319 50 1 4.0807 -0.2723 0.2220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052893473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:06 Heat of formation + Delta-G solvation = 38.730635 kcal Electronic energy + Delta-G solvation = -28687.021325 eV Core-core repulsion = 24908.536223 eV Total energy + Delta-G solvation = -3778.485102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.18696 -39.07509 -37.58291 -36.10985 -34.53240 -32.32860 -31.51640 -31.34539 -30.57461 -29.37883 -28.49534 -26.20862 -25.45945 -23.91515 -23.08060 -22.36231 -21.70469 -20.21427 -19.66874 -19.04611 -18.05878 -16.75354 -16.64847 -16.08370 -15.48970 -15.26761 -15.07509 -14.98966 -14.46503 -14.15550 -13.89594 -13.75830 -13.72190 -13.58497 -13.11524 -12.99341 -12.57214 -12.56846 -12.39337 -12.33076 -12.15505 -12.08499 -11.75168 -11.38112 -11.16599 -10.92083 -10.73033 -10.52380 -10.27689 -10.14204 -10.03063 -9.94702 -9.67432 -9.42089 -9.30100 -9.28458 -9.11063 -8.47576 -8.26142 -7.53201 -6.64529 -5.68288 -3.05275 1.07644 1.34462 2.75862 3.17882 3.46232 3.54458 3.56454 3.69125 4.05975 4.48835 4.55292 4.61126 4.81474 4.90459 4.94488 5.07972 5.15622 5.19093 5.26834 5.34255 5.41631 5.45292 5.47495 5.48944 5.65146 5.81593 5.92413 5.96768 6.01696 6.10165 6.21102 6.34488 6.39208 6.45108 6.50235 6.57064 6.60518 6.80069 6.87975 6.96072 6.99337 7.02808 7.12757 7.16748 7.26212 7.31539 7.72002 7.84319 8.03771 8.05298 8.51888 8.76178 9.29266 9.97220 10.47853 11.39294 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.002483 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.241002 B =11274.510139 C =11916.983592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.635 5.635 3 C 0.091 3.909 4 C 0.232 3.768 5 C -0.211 4.211 6 C -0.011 4.011 7 C -0.187 4.187 8 C 0.554 3.446 9 O -0.536 6.536 10 N -0.726 5.726 11 C 0.156 3.844 12 H 0.102 0.898 13 C -0.122 4.122 14 C -0.126 4.126 15 C 0.160 3.840 16 N -0.589 5.589 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.162 3.838 26 C -0.151 4.151 27 C -0.037 4.037 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.388 0.612 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.030 0.970 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.004 0.996 44 H 0.251 0.749 45 H 0.033 0.967 46 H 0.028 0.972 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.124 0.876 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 23.948 3.236 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.345 5.345 3 C -0.052 4.052 4 C 0.130 3.870 5 C -0.233 4.233 6 C -0.031 4.031 7 C -0.192 4.192 8 C 0.341 3.659 9 O -0.414 6.414 10 N -0.377 5.377 11 C 0.053 3.947 12 H 0.120 0.880 13 C -0.160 4.160 14 C -0.165 4.165 15 C 0.037 3.963 16 N -0.310 5.310 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.218 1.218 25 C 0.032 3.968 26 C -0.193 4.193 27 C -0.056 4.056 28 C -0.231 4.231 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.222 0.778 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.022 0.978 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.142 0.858 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.818 23.251 2.997 24.713 hybrid contribution -0.212 -0.223 -0.091 0.321 sum -8.031 23.028 2.906 24.561 Atomic orbital electron populations 1.21751 0.79397 1.03436 1.01086 1.46230 1.05241 1.03334 1.79725 1.21661 0.97374 0.84813 1.01378 1.17996 0.91383 0.85726 0.91940 1.20670 0.99909 0.90855 1.11856 1.21045 0.92830 0.97905 0.91282 1.19873 0.94446 0.93136 1.11748 1.18177 0.82463 0.88569 0.76695 1.90814 1.68100 1.32979 1.49529 1.46419 1.06620 1.10209 1.74431 1.21244 0.91501 0.83571 0.98379 0.88049 1.21377 0.95850 0.98909 0.99851 1.20884 1.03831 0.94191 0.97565 1.20296 0.88288 0.97326 0.90385 1.44321 1.46182 1.17253 1.23279 1.19274 1.29701 0.95184 0.93024 0.91337 1.24836 1.01058 0.98582 0.95441 1.69977 1.54442 1.33790 0.96568 0.86235 0.77369 0.85906 0.77379 1.20504 1.21951 1.21792 1.20353 0.93812 0.91044 0.91618 1.23314 1.02232 0.98840 0.94952 1.21039 0.99274 0.91250 0.94082 1.20555 0.92178 0.98539 1.11828 0.90059 0.92833 0.92499 0.93190 0.91525 0.91019 0.85411 0.84684 0.77795 0.91907 0.92900 0.95173 0.88413 0.88297 0.97751 0.93889 0.94845 0.95341 0.92547 0.93717 0.85773 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.61 59.85 0.64 1.14 16 2 N -0.63 -5.06 3.39 -187.56 -0.64 -5.70 16 3 C 0.09 0.50 10.35 59.85 0.62 1.12 16 4 C 0.23 2.40 6.54 -83.86 -0.55 1.85 16 5 C -0.21 -2.34 9.29 -39.44 -0.37 -2.71 16 6 C -0.01 -0.15 9.58 -39.23 -0.38 -0.53 16 7 C -0.19 -2.72 5.88 -104.95 -0.62 -3.34 16 8 C 0.55 10.13 7.73 -12.48 -0.10 10.04 16 9 O -0.54 -12.38 15.98 5.28 0.08 -12.29 16 10 N -0.73 -12.04 4.90 -55.30 -0.27 -12.31 16 11 C 0.16 3.10 2.24 -68.39 -0.15 2.95 16 12 H 0.10 2.58 6.22 -51.92 -0.32 2.26 16 13 C -0.12 -2.20 5.34 -28.41 -0.15 -2.35 16 14 C -0.13 -2.71 5.01 -30.19 -0.15 -2.86 16 15 C 0.16 3.77 5.25 -5.21 -0.03 3.74 16 16 N -0.59 -14.72 2.61 -175.08 -0.46 -15.18 16 17 C -0.24 -6.74 9.66 -15.06 -0.15 -6.88 16 18 H 0.07 1.91 7.88 -52.49 -0.41 1.50 16 19 C 0.00 -0.05 4.96 -17.43 -0.09 -0.14 16 20 N -0.90 -25.68 9.37 55.49 0.52 -25.16 16 21 Si 0.90 22.34 29.60 -169.99 -5.03 17.31 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.16 3.47 5.18 -4.66 -0.02 3.45 16 26 C -0.15 -3.06 6.00 -24.76 -0.15 -3.20 16 27 C -0.04 -0.42 9.53 -39.23 -0.37 -0.80 16 28 C -0.21 -2.10 9.23 -39.45 -0.36 -2.47 16 29 H 0.08 0.47 5.28 -51.93 -0.27 0.19 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 34 H 0.07 0.37 5.96 -51.93 -0.31 0.06 16 35 H 0.13 1.14 5.71 -52.49 -0.30 0.84 16 36 H 0.14 1.93 7.64 -52.49 -0.40 1.52 16 37 H 0.39 5.01 6.52 -40.82 -0.27 4.74 16 38 H 0.06 1.08 6.28 -51.93 -0.33 0.75 16 39 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 2.51 5.52 -51.93 -0.29 2.22 16 42 H 0.10 2.61 5.79 -51.93 -0.30 2.31 16 43 H 0.00 0.10 8.12 -51.93 -0.42 -0.33 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 46 H 0.03 0.55 6.88 -51.93 -0.36 0.20 16 47 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 48 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.12 1.14 6.39 -52.49 -0.34 0.81 16 50 H 0.13 0.97 6.00 -52.49 -0.31 0.65 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -32.98 380.80 -9.97 -42.95 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.54 Total: 5.64 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.37 Total: -0.99 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.84 Total: -58.36 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.98 -9.97 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052893473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.680 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds