Wall clock time and date at job start Sat Apr 11 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99876 * 2 1 4 4 C 1.39709 * 120.00339 * 180.02562 * 2 1 3 5 5 C 1.39028 * 120.00136 * 359.97438 * 4 2 1 6 6 C 1.38198 * 120.21784 * 180.02562 * 5 4 2 7 7 C 1.38024 * 120.22952 * 359.97438 * 6 5 4 8 8 C 1.39567 * 120.00594 * 359.97285 * 7 6 5 9 9 C 1.47864 * 120.11061 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99985 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00259 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00198 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99790 * 12 11 9 14 14 C 1.52997 * 109.47007 * 274.99841 * 12 11 9 15 15 C 1.53002 * 109.46817 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 20 20 N 1.46496 * 109.47487 * 179.97438 * 18 17 16 21 21 C 1.36933 * 120.00258 * 274.99944 * 20 18 17 22 22 H 1.07997 * 120.00195 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00104 * 179.97438 * 21 20 18 24 24 N 1.31614 * 120.00154 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47145 * 60.00236 * 25 23 21 27 27 H 1.48498 * 109.47050 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47170 * 300.00435 * 25 23 21 29 29 C 1.38634 * 120.00496 * 180.23598 * 4 2 1 30 30 H 1.08997 * 109.47167 * 269.99826 * 1 2 3 31 31 H 1.08997 * 109.46907 * 30.00075 * 1 2 3 32 32 H 1.09004 * 109.46697 * 150.00024 * 1 2 3 33 33 H 1.08998 * 109.47330 * 270.00008 * 3 2 1 34 34 H 1.08998 * 109.47390 * 30.00196 * 3 2 1 35 35 H 1.09003 * 109.47142 * 150.00126 * 3 2 1 36 36 H 1.07994 * 119.88960 * 0.02562 * 5 4 2 37 37 H 1.08004 * 119.88717 * 179.97438 * 6 5 4 38 38 H 1.08004 * 120.00170 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99692 * 359.97438 * 11 9 8 40 40 H 1.08993 * 109.47194 * 59.99623 * 14 12 11 41 41 H 1.09002 * 109.46695 * 299.99637 * 14 12 11 42 42 H 1.08992 * 109.47063 * 299.99823 * 15 14 12 43 43 H 1.09004 * 109.46733 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 45 45 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 48 48 H 0.97007 * 119.99693 * 95.00333 * 20 18 17 49 49 H 0.96996 * 120.00649 * 180.02562 * 24 23 21 50 50 H 1.07997 * 120.11493 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 1.4686 -2.4140 -0.0005 6 6 2.1551 -3.6133 -0.0005 7 6 3.5353 -3.6240 -0.0011 8 6 4.2426 -2.4208 -0.0022 9 6 5.7212 -2.4295 -0.0033 10 8 6.3352 -1.3805 -0.0038 11 7 6.3882 -3.6006 -0.0038 12 6 7.8532 -3.6093 -0.0044 13 1 8.2217 -2.7697 0.5851 14 6 8.3633 -3.4863 -1.4416 15 6 9.8933 -3.4959 -1.4422 16 6 10.3953 -4.8067 -0.8332 17 6 9.8852 -4.9297 0.6040 18 6 8.3552 -4.9200 0.6047 19 1 7.9864 -5.7593 0.0152 20 7 7.8667 -5.0383 1.9807 21 6 7.7283 -6.2740 2.5543 22 1 7.9797 -7.1614 1.9924 23 6 7.2660 -6.3861 3.8584 24 7 6.9601 -5.3047 4.5434 25 14 7.0779 -8.0718 4.6410 26 1 8.3961 -8.7550 4.6678 27 1 6.5703 -7.9197 6.0282 28 1 6.1171 -8.8809 3.8488 29 6 3.5500 -1.2099 0.0044 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 2.3792 1.5834 -1.0276 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5138 36 1 0.3886 -2.4120 -0.0005 37 1 1.6098 -4.5456 -0.0001 38 1 4.0681 -4.5635 -0.0015 39 1 5.8983 -4.4378 -0.0031 40 1 8.0053 -2.5528 -1.8756 41 1 7.9948 -4.3259 -2.0309 42 1 10.2622 -2.6567 -0.8527 43 1 10.2568 -3.4088 -2.4661 44 1 10.0265 -5.6460 -1.4228 45 1 11.4853 -4.8134 -0.8332 46 1 10.2431 -5.8632 1.0381 47 1 10.2541 -4.0903 1.1935 48 1 7.6412 -4.2413 2.4856 49 1 6.6373 -5.3829 5.4547 50 1 4.0918 -0.2757 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085404257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:24 Heat of formation + Delta-G solvation = 1.566547 kcal Electronic energy + Delta-G solvation = -28830.028930 eV Core-core repulsion = 25049.932272 eV Total energy + Delta-G solvation = -3780.096657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.14475 -39.08088 -37.66660 -36.04219 -34.00970 -33.70023 -31.30264 -31.10429 -30.24669 -29.07038 -28.35275 -27.52700 -24.84974 -23.80623 -23.54856 -21.68136 -21.30523 -21.01534 -19.87327 -19.32639 -17.98226 -17.08850 -16.17468 -16.08520 -15.56974 -15.34158 -15.23169 -14.92288 -14.53814 -14.18235 -13.89357 -13.75294 -13.65141 -13.58232 -13.36384 -12.91250 -12.81333 -12.64625 -12.47083 -12.37929 -12.19423 -12.04737 -12.01274 -11.53705 -11.04947 -10.98040 -10.89276 -10.79018 -10.71354 -10.52813 -10.30301 -10.17054 -9.89651 -9.73441 -9.61284 -9.46843 -8.89569 -8.86364 -8.47988 -7.34881 -6.96085 -5.75108 -3.04998 1.08448 1.63024 2.97981 3.22529 3.43066 3.48020 3.49292 3.61572 4.13612 4.57556 4.76890 4.82888 4.94348 5.07635 5.09515 5.11519 5.18748 5.24222 5.34413 5.36600 5.41631 5.46021 5.54766 5.55903 5.56712 5.63956 5.69767 5.75787 5.86013 5.93148 5.96398 6.00076 6.01810 6.14914 6.22044 6.37029 6.48901 6.50090 6.52776 6.56400 6.58189 6.62018 6.76399 6.89831 6.95369 7.12777 7.13785 7.39898 7.69096 8.00271 8.41777 8.65245 9.53434 10.10275 10.45578 11.46682 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.003639 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.147550 B = 7692.263449 C = 9772.977779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.641 5.641 3 C 0.092 3.908 4 C 0.200 3.800 5 C -0.178 4.178 6 C -0.080 4.080 7 C -0.136 4.136 8 C -0.080 4.080 9 C 0.558 3.442 10 O -0.549 6.549 11 N -0.700 5.700 12 C 0.141 3.859 13 H 0.084 0.916 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 C -0.138 4.138 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 8.196 -13.728 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.354 5.354 3 C -0.051 4.051 4 C 0.099 3.901 5 C -0.200 4.200 6 C -0.099 4.099 7 C -0.156 4.156 8 C -0.083 4.083 9 C 0.345 3.655 10 O -0.429 6.429 11 N -0.349 5.349 12 C 0.036 3.964 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.174 4.174 18 C 0.062 3.938 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.161 4.161 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.958 8.922 -13.641 18.599 hybrid contribution -0.453 -1.095 0.854 1.460 sum -9.411 7.827 -12.788 17.702 Atomic orbital electron populations 1.21595 0.79671 1.02422 1.01064 1.46247 1.04807 1.03093 1.81301 1.21645 0.97537 0.84754 1.01153 1.17675 0.90897 0.85850 0.95640 1.20794 0.99575 0.91104 1.08539 1.20815 0.93888 0.97374 0.97784 1.21152 0.94430 0.97167 1.02899 1.19740 0.92894 0.93708 1.02001 1.18235 0.86998 0.84006 0.76255 1.90712 1.69563 1.31730 1.50868 1.45824 1.07464 1.08306 1.73308 1.21317 0.78796 1.00501 0.95829 0.89749 1.21874 0.95791 1.01796 0.96839 1.21471 0.95052 0.98372 1.00262 1.21583 0.99634 0.97105 0.97430 1.22219 0.98283 1.02244 0.94649 1.20461 0.92061 0.93357 0.87873 0.93200 1.42409 1.77928 1.06487 1.09382 1.19147 1.37070 0.85324 0.95765 0.91282 1.24726 1.02085 0.96756 0.97009 1.69659 1.50522 1.26579 1.10832 0.86323 0.77735 0.83907 0.78502 1.21355 1.21790 1.21315 1.20720 0.91632 0.98333 1.05448 0.93492 0.91727 0.91381 0.93438 0.91672 0.90933 0.85941 0.85584 0.85600 0.76095 0.91905 0.92034 0.91969 0.92419 0.92391 0.92714 0.91610 0.92460 0.78099 0.93472 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 10.19 59.85 0.61 1.34 16 2 N -0.64 -6.92 3.41 -187.59 -0.64 -7.56 16 3 C 0.09 0.84 10.19 59.85 0.61 1.45 16 4 C 0.20 2.63 6.55 -83.83 -0.55 2.08 16 5 C -0.18 -2.14 9.20 -39.30 -0.36 -2.50 16 6 C -0.08 -1.00 10.02 -39.67 -0.40 -1.40 16 7 C -0.14 -1.96 9.54 -39.16 -0.37 -2.33 16 8 C -0.08 -1.30 5.87 -104.99 -0.62 -1.91 16 9 C 0.56 10.25 7.74 -12.32 -0.10 10.16 16 10 O -0.55 -11.47 16.01 5.32 0.09 -11.38 16 11 N -0.70 -12.15 4.86 -54.74 -0.27 -12.42 16 12 C 0.14 2.47 1.98 -67.93 -0.13 2.34 16 13 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 14 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 15 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 16 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 17 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 18 C 0.17 3.31 2.29 -67.93 -0.16 3.15 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -17.43 4.95 -53.43 -0.26 -17.70 16 21 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 25 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 29 C -0.14 -2.10 8.75 -38.96 -0.34 -2.44 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 6.19 -51.93 -0.32 0.15 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.07 0.74 6.18 -51.93 -0.32 0.42 16 36 H 0.12 1.17 6.12 -52.49 -0.32 0.85 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.13 1.71 6.40 -52.48 -0.34 1.38 16 39 H 0.40 6.65 6.63 -40.82 -0.27 6.38 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.39 10.34 7.80 -40.82 -0.32 10.02 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.13 2.04 5.72 -52.49 -0.30 1.74 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -32.06 396.21 -10.11 -42.17 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -8.04 Total: 15.95 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.66 Total: -4.95 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.45 Total: -64.77 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.06 -10.11 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085404257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.741 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds