Wall clock time and date at job start Sat Apr 11 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00032 * 2 1 4 4 C 1.46907 * 110.99653 * 123.95206 * 2 1 3 5 5 C 1.50696 * 109.47042 * 66.04993 * 4 2 1 6 6 C 1.38353 * 119.85964 * 90.00001 * 5 4 2 7 7 C 1.37956 * 120.14971 * 179.97438 * 6 5 4 8 8 C 1.39581 * 119.85186 * 0.02562 * 7 6 5 9 9 C 1.47843 * 120.14181 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00413 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 H 1.08998 * 112.85418 * 43.79694 * 13 12 11 15 15 C 1.53786 * 113.61777 * 175.00123 * 13 12 11 16 16 C 1.53776 * 87.08151 * 139.97798 * 15 13 12 17 17 H 1.09002 * 113.61739 * 220.02020 * 16 15 13 18 18 N 1.46494 * 113.61744 * 89.20138 * 16 15 13 19 19 C 1.36939 * 120.00538 * 154.99626 * 18 16 15 20 20 H 1.07996 * 119.99687 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00082 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99614 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00397 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47361 * 89.99226 * 23 21 19 25 25 H 1.48501 * 109.47566 * 209.99810 * 23 21 19 26 26 H 1.48505 * 109.47111 * 329.99659 * 23 21 19 27 27 C 1.53779 * 87.08283 * 334.56755 * 16 15 13 28 28 C 1.39573 * 119.70918 * 0.24765 * 8 7 6 29 29 C 1.37962 * 119.85211 * 359.47305 * 28 8 7 30 30 H 1.08993 * 109.47316 * 296.04750 * 1 2 3 31 31 H 1.08998 * 109.46593 * 56.04882 * 1 2 3 32 32 H 1.09000 * 109.47149 * 176.04264 * 1 2 3 33 33 H 1.09003 * 109.46995 * 183.95113 * 3 2 1 34 34 H 1.09003 * 109.47199 * 303.94740 * 3 2 1 35 35 H 1.08997 * 109.47597 * 63.95463 * 3 2 1 36 36 H 1.08994 * 109.47288 * 306.04410 * 4 2 1 37 37 H 1.09000 * 109.46464 * 186.04653 * 4 2 1 38 38 H 1.08007 * 119.92326 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.07492 * 179.97438 * 7 6 5 40 40 H 0.96995 * 120.00015 * 359.72451 * 11 9 8 41 41 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 42 42 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 43 43 H 1.08994 * 113.61132 * 254.52556 * 15 13 12 44 44 H 1.09000 * 113.60953 * 25.42997 * 15 13 12 45 45 H 0.97001 * 120.00006 * 334.99691 * 18 16 15 46 46 H 0.97005 * 119.99601 * 180.02562 * 22 21 19 47 47 H 1.09008 * 113.61680 * 270.88364 * 27 16 15 48 48 H 1.09001 * 113.61701 * 139.98527 * 27 16 15 49 49 H 1.08001 * 120.07226 * 179.72750 * 28 8 7 50 50 H 1.07999 * 119.92663 * 180.27041 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6369 -2.2204 0.9729 6 6 2.4968 -3.0698 0.2997 7 6 2.1748 -4.4024 0.1458 8 6 0.9782 -4.8931 0.6707 9 6 0.6265 -6.3200 0.5091 10 8 1.3798 -7.0684 -0.0823 11 7 -0.5295 -6.7909 1.0176 12 6 -0.8782 -8.2046 0.8569 13 6 -2.2303 -8.4749 1.5201 14 1 -2.9705 -7.7053 1.3013 15 6 -2.7477 -9.9068 1.3032 16 6 -3.2207 -9.8733 2.7660 17 1 -3.0571 -10.8098 3.2994 18 7 -4.5808 -9.3548 2.9313 19 6 -5.3240 -9.7174 4.0229 20 1 -4.9072 -10.3854 4.7621 21 6 -6.6125 -9.2256 4.1797 22 7 -7.3266 -9.5738 5.2291 23 14 -7.3331 -8.0697 2.9015 24 1 -8.0289 -8.8608 1.8549 25 1 -8.3012 -7.1518 3.5538 26 1 -6.2419 -7.2774 2.2794 27 6 -2.1248 -8.8235 3.0142 28 6 0.1125 -4.0297 1.3438 29 6 0.4492 -2.7004 1.4957 30 1 -0.3633 0.4512 0.9232 31 1 -0.3632 0.5739 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0708 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8723 0.9232 36 1 1.5611 -0.3872 2.0628 37 1 3.0797 -0.6611 1.1757 38 1 3.4226 -2.6888 -0.1057 39 1 2.8468 -5.0643 -0.3803 40 1 -1.1287 -6.1945 1.4930 41 1 -0.9400 -8.4453 -0.2045 42 1 -0.1130 -8.8232 1.3258 43 1 -3.5625 -9.9720 0.5823 44 1 -1.9567 -10.6331 1.1166 45 1 -4.9550 -8.7545 2.2676 46 1 -8.2272 -9.2304 5.3385 47 1 -1.1635 -9.2538 3.2953 48 1 -2.4367 -8.0143 3.6745 49 1 -0.8169 -4.4022 1.7485 50 1 -0.2177 -2.0322 2.0202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086506321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:41 Heat of formation + Delta-G solvation = 29.380971 kcal Electronic energy + Delta-G solvation = -27218.468965 eV Core-core repulsion = 23439.578432 eV Total energy + Delta-G solvation = -3778.890533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50767 -39.33483 -38.56794 -37.21792 -34.84755 -33.33193 -32.27074 -31.32873 -30.66232 -28.33319 -28.00141 -26.87855 -25.20441 -23.88388 -23.34468 -22.78671 -21.83511 -21.64506 -20.43573 -18.80904 -17.97758 -17.64445 -16.50276 -16.21317 -15.97063 -15.72089 -15.46832 -15.22284 -14.88751 -14.73298 -14.50209 -14.37715 -13.88345 -13.75220 -13.60264 -13.34660 -12.92093 -12.83929 -12.73549 -12.57876 -12.47904 -12.19889 -12.08383 -12.01637 -11.66533 -11.60045 -11.40970 -11.30942 -10.94652 -10.53978 -10.34405 -10.19779 -9.93219 -9.69462 -9.56141 -9.29506 -9.28567 -9.03652 -8.94331 -8.80237 -7.34011 -5.83219 -3.19503 0.52968 1.06273 2.64219 3.07506 3.30806 3.34324 3.40039 3.43982 3.76734 4.25373 4.38471 4.52369 4.53268 4.62330 4.70497 4.80091 4.86843 4.90307 4.91330 4.98882 5.03864 5.05869 5.13160 5.20452 5.28920 5.36171 5.38208 5.39346 5.48059 5.50013 5.52437 5.66409 5.72880 5.82598 5.88398 5.95112 6.07327 6.10295 6.16991 6.20696 6.30133 6.45001 6.46339 6.49619 6.56852 6.59070 6.71105 6.86127 7.40812 7.94768 8.10061 8.36493 9.14171 9.86362 10.05585 11.34853 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002221 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.926477 B =12604.821677 C =14261.880355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.089 3.911 5 C -0.057 4.057 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.131 4.131 9 C 0.555 3.445 10 O -0.542 6.542 11 N -0.720 5.720 12 C 0.131 3.869 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.148 4.148 16 C 0.172 3.828 17 H 0.072 0.928 18 N -0.730 5.730 19 C -0.247 4.247 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.167 4.167 28 C -0.085 4.085 29 C -0.121 4.121 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.128 0.872 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.399 19.570 -10.689 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.038 4.038 5 C -0.058 4.058 6 C -0.126 4.126 7 C -0.079 4.079 8 C -0.134 4.134 9 C 0.342 3.658 10 O -0.420 6.420 11 N -0.371 5.371 12 C 0.008 3.992 13 C -0.143 4.143 14 H 0.108 0.892 15 C -0.188 4.188 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.208 4.208 28 C -0.104 4.104 29 C -0.139 4.139 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.146 0.854 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.945 18.680 -11.306 30.256 hybrid contribution -1.298 1.668 0.147 2.118 sum 19.648 20.347 -11.158 30.406 Atomic orbital electron populations 1.22511 0.87002 1.02983 1.00562 1.61994 1.08458 1.13720 1.42399 1.22406 1.00859 0.88454 1.00725 1.21132 1.00776 0.89853 0.92045 1.19896 0.94369 0.94991 0.96553 1.20980 1.00027 0.92767 0.98776 1.21282 0.95117 0.95338 0.96195 1.20001 0.97041 0.93418 1.02982 1.18299 0.81315 0.87404 0.78784 1.90759 1.50300 1.58722 1.42264 1.45999 1.21706 1.11937 1.57472 1.21502 0.96503 0.80463 1.00747 1.22763 0.95121 0.98621 0.97782 0.89248 1.23460 1.00456 0.94861 0.99999 1.21003 0.84613 0.95330 0.92997 0.91026 1.42512 1.11578 1.56101 1.26785 1.19114 0.95164 1.24117 0.99240 0.89017 1.24688 0.96707 1.00172 0.97530 1.69703 1.10873 1.48385 1.28925 0.86556 0.78936 0.81313 0.81698 1.21000 1.21688 1.20430 1.23864 1.00610 1.02018 0.94262 1.21313 0.98703 0.93447 0.96932 1.20990 0.96676 0.95416 1.00865 0.95453 0.91265 0.90693 0.91197 0.91107 0.95522 0.93533 0.89575 0.85276 0.84587 0.76379 0.91607 0.91217 0.91397 0.89930 0.80537 0.92980 0.90883 0.91359 0.85442 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.13 60.07 0.55 0.66 16 2 N -0.54 -3.77 5.01 -252.73 -1.27 -5.03 16 3 C 0.02 0.12 9.57 60.06 0.57 0.70 16 4 C 0.09 0.58 5.11 -4.97 -0.03 0.55 16 5 C -0.06 -0.46 4.89 -104.54 -0.51 -0.97 16 6 C -0.11 -0.91 9.68 -39.64 -0.38 -1.29 16 7 C -0.06 -0.62 9.60 -39.18 -0.38 -1.00 16 8 C -0.13 -1.45 5.87 -104.97 -0.62 -2.07 16 9 C 0.55 7.39 7.77 -12.33 -0.10 7.30 16 10 O -0.54 -8.98 16.35 5.33 0.09 -8.90 16 11 N -0.72 -8.58 5.51 -61.25 -0.34 -8.91 16 12 C 0.13 1.66 5.51 -4.04 -0.02 1.63 16 13 C -0.12 -1.70 3.63 -89.80 -0.33 -2.02 16 14 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 16 C 0.17 3.14 4.56 -67.12 -0.31 2.84 16 17 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 18 N -0.73 -16.58 5.12 -52.64 -0.27 -16.85 16 19 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 23 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 27 C -0.17 -2.58 7.43 -25.92 -0.19 -2.77 16 28 C -0.09 -0.78 9.54 -39.18 -0.37 -1.15 16 29 C -0.12 -0.98 7.94 -39.64 -0.31 -1.29 16 30 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.55 6.16 -51.93 -0.32 0.23 16 33 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 34 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.05 0.28 8.06 -51.93 -0.42 -0.14 16 37 H 0.09 0.47 8.00 -51.93 -0.42 0.06 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.14 1.40 7.65 -52.49 -0.40 1.00 16 40 H 0.40 4.05 6.51 -40.82 -0.27 3.78 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 45 H 0.36 8.05 5.76 -40.82 -0.24 7.81 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.07 1.02 7.90 -51.92 -0.41 0.61 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.13 0.97 6.41 -52.49 -0.34 0.63 16 50 H 0.13 0.81 8.03 -52.49 -0.42 0.39 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -33.00 404.16 -10.79 -43.79 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.29 Total: 9.12 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.87 Total: -8.13 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -1.10 Total: -58.81 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.00 -10.79 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.166 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds