Wall clock time and date at job start Sat Apr 11 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00032 * 2 1 4 4 C 1.46907 * 110.99653 * 123.95206 * 2 1 3 5 5 C 1.50696 * 109.47042 * 66.04993 * 4 2 1 6 6 C 1.38353 * 119.85964 * 90.00001 * 5 4 2 7 7 C 1.37956 * 120.14971 * 179.97438 * 6 5 4 8 8 C 1.39581 * 119.85186 * 0.02562 * 7 6 5 9 9 C 1.47843 * 120.14181 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00413 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 H 1.08998 * 112.85418 * 43.79694 * 13 12 11 15 15 C 1.53786 * 113.61777 * 175.00123 * 13 12 11 16 16 C 1.53776 * 87.08151 * 139.97798 * 15 13 12 17 17 H 1.09002 * 113.61739 * 220.02020 * 16 15 13 18 18 N 1.46494 * 113.61744 * 89.20138 * 16 15 13 19 19 C 1.36939 * 120.00538 * 154.99626 * 18 16 15 20 20 H 1.07996 * 119.99687 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00082 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99614 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00397 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47361 * 89.99226 * 23 21 19 25 25 H 1.48501 * 109.47566 * 209.99810 * 23 21 19 26 26 H 1.48505 * 109.47111 * 329.99659 * 23 21 19 27 27 C 1.53779 * 87.08283 * 334.56755 * 16 15 13 28 28 C 1.39573 * 119.70918 * 0.24765 * 8 7 6 29 29 C 1.37962 * 119.85211 * 359.47305 * 28 8 7 30 30 H 1.08993 * 109.47316 * 296.04750 * 1 2 3 31 31 H 1.08998 * 109.46593 * 56.04882 * 1 2 3 32 32 H 1.09000 * 109.47149 * 176.04264 * 1 2 3 33 33 H 1.09003 * 109.46995 * 183.95113 * 3 2 1 34 34 H 1.09003 * 109.47199 * 303.94740 * 3 2 1 35 35 H 1.08997 * 109.47597 * 63.95463 * 3 2 1 36 36 H 1.08994 * 109.47288 * 306.04410 * 4 2 1 37 37 H 1.09000 * 109.46464 * 186.04653 * 4 2 1 38 38 H 1.08007 * 119.92326 * 0.02562 * 6 5 4 39 39 H 1.08001 * 120.07492 * 179.97438 * 7 6 5 40 40 H 0.96995 * 120.00015 * 359.72451 * 11 9 8 41 41 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 42 42 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 43 43 H 1.08994 * 113.61132 * 254.52556 * 15 13 12 44 44 H 1.09000 * 113.60953 * 25.42997 * 15 13 12 45 45 H 0.97001 * 120.00006 * 334.99691 * 18 16 15 46 46 H 0.97005 * 119.99601 * 180.02562 * 22 21 19 47 47 H 1.09008 * 113.61680 * 270.88364 * 27 16 15 48 48 H 1.09001 * 113.61701 * 139.98527 * 27 16 15 49 49 H 1.08001 * 120.07226 * 179.72750 * 28 8 7 50 50 H 1.07999 * 119.92663 * 180.27041 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6369 -2.2204 0.9729 6 6 2.4968 -3.0698 0.2997 7 6 2.1748 -4.4024 0.1458 8 6 0.9782 -4.8931 0.6707 9 6 0.6265 -6.3200 0.5091 10 8 1.3798 -7.0684 -0.0823 11 7 -0.5295 -6.7909 1.0176 12 6 -0.8782 -8.2046 0.8569 13 6 -2.2303 -8.4749 1.5201 14 1 -2.9705 -7.7053 1.3013 15 6 -2.7477 -9.9068 1.3032 16 6 -3.2207 -9.8733 2.7660 17 1 -3.0571 -10.8098 3.2994 18 7 -4.5808 -9.3548 2.9313 19 6 -5.3240 -9.7174 4.0229 20 1 -4.9072 -10.3854 4.7621 21 6 -6.6125 -9.2256 4.1797 22 7 -7.3266 -9.5738 5.2291 23 14 -7.3331 -8.0697 2.9015 24 1 -8.0289 -8.8608 1.8549 25 1 -8.3012 -7.1518 3.5538 26 1 -6.2419 -7.2774 2.2794 27 6 -2.1248 -8.8235 3.0142 28 6 0.1125 -4.0297 1.3438 29 6 0.4492 -2.7004 1.4957 30 1 -0.3633 0.4512 0.9232 31 1 -0.3632 0.5739 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0708 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8723 0.9232 36 1 1.5611 -0.3872 2.0628 37 1 3.0797 -0.6611 1.1757 38 1 3.4226 -2.6888 -0.1057 39 1 2.8468 -5.0643 -0.3803 40 1 -1.1287 -6.1945 1.4930 41 1 -0.9400 -8.4453 -0.2045 42 1 -0.1130 -8.8232 1.3258 43 1 -3.5625 -9.9720 0.5823 44 1 -1.9567 -10.6331 1.1166 45 1 -4.9550 -8.7545 2.2676 46 1 -8.2272 -9.2304 5.3385 47 1 -1.1635 -9.2538 3.2953 48 1 -2.4367 -8.0143 3.6745 49 1 -0.8169 -4.4022 1.7485 50 1 -0.2177 -2.0322 2.0202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086506321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:39 Heat of formation + Delta-G solvation = 7.293664 kcal Electronic energy + Delta-G solvation = -27219.426743 eV Core-core repulsion = 23439.578432 eV Total energy + Delta-G solvation = -3779.848311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.38112 -40.33299 -39.63813 -37.79714 -36.14050 -35.04399 -33.09238 -32.53639 -31.96980 -29.31335 -28.45555 -27.71632 -26.46162 -25.45274 -24.26457 -23.65592 -22.96861 -22.36284 -21.29292 -20.21395 -19.56740 -18.92335 -17.41295 -16.89815 -16.68366 -16.52192 -16.40242 -16.30197 -16.04482 -15.98058 -15.38655 -15.29816 -15.03891 -14.87404 -14.61820 -14.53237 -14.25427 -14.02357 -13.51500 -13.33986 -13.23791 -13.12810 -13.05221 -13.01093 -12.69558 -12.67995 -12.48020 -12.24667 -12.18745 -11.96854 -11.88027 -11.65132 -11.57056 -11.12527 -10.95452 -10.80262 -10.21296 -9.96531 -9.81031 -9.29772 -9.29224 -8.02484 -5.36220 -0.21695 0.39411 1.37203 1.41863 1.48739 1.77802 2.12765 2.48271 2.75545 3.22484 3.27637 3.51098 3.58084 3.72504 3.75639 3.80587 3.89492 3.96787 4.01864 4.21390 4.27097 4.30355 4.36663 4.38958 4.45772 4.57285 4.59592 4.69145 4.73716 4.75162 4.77259 4.85307 4.93153 4.97066 5.02925 5.04178 5.04920 5.08284 5.22798 5.27140 5.31337 5.36400 5.47276 5.53463 5.53989 5.81015 5.87400 6.01843 6.06737 6.22800 6.47224 7.07991 7.13003 7.84760 8.03568 9.18966 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002221 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.926477 B =12604.821677 C =14261.880355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.557 5.557 3 C 0.024 3.976 4 C 0.090 3.910 5 C -0.053 4.053 6 C -0.108 4.108 7 C -0.073 4.073 8 C -0.151 4.151 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.138 3.862 13 C -0.105 4.105 14 H 0.091 0.909 15 C -0.133 4.133 16 C 0.145 3.855 17 H 0.058 0.942 18 N -0.733 5.733 19 C -0.232 4.232 20 H 0.056 0.944 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.957 3.043 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.247 1.247 27 C -0.155 4.155 28 C -0.085 4.085 29 C -0.121 4.121 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.367 0.633 46 H 0.258 0.742 47 H 0.090 0.910 48 H 0.053 0.947 49 H 0.142 0.858 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.431 22.006 -12.246 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.281 5.281 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.054 4.054 6 C -0.126 4.126 7 C -0.092 4.092 8 C -0.154 4.154 9 C 0.342 3.658 10 O -0.464 6.464 11 N -0.364 5.364 12 C 0.014 3.986 13 C -0.124 4.124 14 H 0.109 0.891 15 C -0.172 4.172 16 C 0.036 3.964 17 H 0.076 0.924 18 N -0.375 5.375 19 C -0.363 4.363 20 H 0.074 0.926 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.172 1.172 27 C -0.195 4.195 28 C -0.104 4.104 29 C -0.139 4.139 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.159 0.841 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 22.027 21.130 -12.885 33.131 hybrid contribution -1.514 0.875 0.692 1.880 sum 20.513 22.004 -12.193 32.460 Atomic orbital electron populations 1.22498 0.87015 1.02482 1.01051 1.61992 1.08640 1.14765 1.42680 1.22437 1.01287 0.87575 1.01095 1.21161 1.01558 0.88674 0.92285 1.20155 0.94000 0.95845 0.95423 1.21162 1.00803 0.92035 0.98616 1.21333 0.95062 0.96144 0.96654 1.19923 0.98133 0.92467 1.04907 1.18653 0.81001 0.88144 0.77983 1.90731 1.51549 1.59885 1.44202 1.45925 1.21544 1.11824 1.57105 1.21364 0.95633 0.80924 1.00630 1.22585 0.95611 0.98148 0.96059 0.89119 1.23361 1.00940 0.96109 0.96791 1.21339 0.83396 0.95579 0.96121 0.92421 1.42422 1.12985 1.56542 1.25505 1.19062 0.95409 1.22316 0.99501 0.92611 1.25537 0.97356 1.02802 1.00077 1.69895 1.11282 1.50655 1.31638 0.85390 0.78490 0.79027 0.78733 1.20641 1.22385 1.17167 1.23717 0.99966 1.00352 0.95495 1.21472 0.98829 0.93675 0.96383 1.21237 0.96954 0.95215 1.00536 0.94803 0.91015 0.91616 0.90481 0.90843 0.95047 0.92753 0.88474 0.83638 0.85486 0.75217 0.91461 0.91410 0.91308 0.87539 0.79945 0.93363 0.89150 0.92787 0.84058 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 127.69 1.17 1.36 16 2 N -0.56 -6.44 5.01 -953.49 -4.78 -11.22 16 3 C 0.02 0.19 9.57 127.69 1.22 1.41 16 4 C 0.09 0.93 5.11 85.55 0.44 1.37 16 5 C -0.05 -0.74 4.89 -19.81 -0.10 -0.83 16 6 C -0.11 -1.66 9.68 22.23 0.22 -1.45 16 7 C -0.07 -1.46 9.60 22.53 0.22 -1.24 16 8 C -0.15 -3.20 5.87 -20.09 -0.12 -3.32 16 9 C 0.55 14.29 7.77 86.78 0.67 14.97 16 10 O -0.58 -19.22 16.35 -3.85 -0.06 -19.29 16 11 N -0.71 -15.67 5.51 -465.98 -2.57 -18.24 16 12 C 0.14 3.17 5.51 86.38 0.48 3.65 16 13 C -0.11 -2.59 3.63 -10.26 -0.04 -2.63 16 14 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.13 -3.54 7.39 31.12 0.23 -3.31 16 16 C 0.15 5.14 4.56 45.52 0.21 5.35 16 17 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 18 N -0.73 -32.66 5.12 -320.47 -1.64 -34.30 16 19 C -0.23 -12.96 10.45 84.03 0.88 -12.09 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.98 -62.57 13.97 21.65 0.30 -62.27 16 23 Si 0.96 44.25 27.74 68.60 1.90 46.15 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 27 C -0.15 -4.51 7.43 31.12 0.23 -4.28 16 28 C -0.08 -1.39 9.54 22.53 0.21 -1.17 16 29 C -0.12 -1.67 7.94 22.23 0.18 -1.49 16 30 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.07 0.84 6.16 -2.39 -0.01 0.82 16 33 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 34 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.49 8.06 -2.39 -0.02 0.47 16 37 H 0.10 0.79 8.00 -2.39 -0.02 0.77 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.13 2.69 7.65 -2.91 -0.02 2.66 16 40 H 0.41 7.34 6.51 -92.71 -0.60 6.73 16 41 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 42 H 0.07 1.63 7.84 -2.39 -0.02 1.61 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.11 2.37 8.10 -2.39 -0.02 2.35 16 45 H 0.37 15.50 5.76 -92.71 -0.53 14.97 16 46 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 47 H 0.09 2.34 7.90 -2.38 -0.02 2.32 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 49 H 0.14 1.81 6.41 -2.91 -0.02 1.79 16 50 H 0.14 1.43 8.03 -2.91 -0.02 1.41 16 Total: -1.00 -72.87 404.16 -0.54 -73.41 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.26 Total: 32.86 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 6.56 Total: -7.11 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -8.68 Total: -126.03 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Total: -72.87 -0.54 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.705 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds