Wall clock time and date at job start Sat Apr 11 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46904 * 111.00052 * 2 1 4 4 C 1.46900 * 110.99708 * 123.94792 * 2 1 3 5 5 C 1.53002 * 109.46898 * 66.04557 * 4 2 1 6 6 N 1.46907 * 109.47179 * 179.97438 * 5 4 2 7 7 C 1.49646 * 110.99737 * 72.71654 * 6 5 4 8 8 C 1.56199 * 106.44801 * 128.98013 * 7 6 5 9 9 C 1.52011 * 100.95463 * 23.58712 * 8 7 6 10 10 H 1.09004 * 111.42374 * 73.89938 * 9 8 7 11 11 C 1.43329 * 110.99969 * 190.00196 * 6 5 4 12 12 H 1.09002 * 107.82653 * 316.67430 * 11 6 5 13 13 C 1.50353 * 127.56808 * 88.55619 * 11 6 5 14 14 C 1.55916 * 102.88979 * 148.22547 * 13 11 6 15 15 N 1.45226 * 122.99712 * 209.48306 * 9 8 7 16 16 C 1.38821 * 111.00337 * 272.87629 * 15 9 8 17 17 C 1.39964 * 119.96927 * 0.02562 * 16 15 9 18 18 N 1.32130 * 120.31529 * 179.97438 * 17 16 15 19 19 C 1.31922 * 120.27430 * 0.02562 * 18 17 16 20 20 C 1.40682 * 119.93378 * 359.97438 * 19 18 17 21 21 C 1.41270 * 120.15410 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00283 * 353.80760 * 21 20 19 23 23 C 1.40066 * 119.99921 * 173.81693 * 21 20 19 24 24 N 1.30725 * 119.99794 * 6.31750 * 23 21 20 25 25 Si 1.86793 * 119.99891 * 186.32137 * 23 21 20 26 26 H 1.48494 * 109.47684 * 59.99958 * 25 23 21 27 27 H 1.48507 * 109.47039 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47377 * 299.99561 * 25 23 21 29 29 N 1.32240 * 119.97092 * 179.72071 * 16 15 9 30 30 H 1.08996 * 109.47078 * 296.04988 * 1 2 3 31 31 H 1.09000 * 109.46732 * 56.04806 * 1 2 3 32 32 H 1.08997 * 109.47040 * 176.05010 * 1 2 3 33 33 H 1.08996 * 109.46937 * 183.95293 * 3 2 1 34 34 H 1.09005 * 109.46804 * 303.95018 * 3 2 1 35 35 H 1.08998 * 109.47137 * 63.95033 * 3 2 1 36 36 H 1.09002 * 109.47366 * 306.04785 * 4 2 1 37 37 H 1.08999 * 109.46957 * 186.04151 * 4 2 1 38 38 H 1.09002 * 109.46926 * 59.99959 * 5 4 2 39 39 H 1.08992 * 109.47575 * 300.00213 * 5 4 2 40 40 H 1.08990 * 110.06087 * 248.23244 * 7 6 5 41 41 H 1.09007 * 110.06123 * 9.73682 * 7 6 5 42 42 H 1.08998 * 111.12678 * 265.66055 * 8 7 6 43 43 H 1.09001 * 111.11913 * 141.50923 * 8 7 6 44 44 H 1.09006 * 110.73149 * 29.87652 * 13 11 6 45 45 H 1.09002 * 110.73321 * 266.57369 * 13 11 6 46 46 H 1.08995 * 110.09522 * 235.65807 * 14 13 11 47 47 H 1.09001 * 110.14527 * 114.08289 * 14 13 11 48 48 H 1.08004 * 119.84351 * 359.94910 * 17 16 15 49 49 H 1.08008 * 120.03404 * 179.97438 * 19 18 17 50 50 H 0.96994 * 120.00241 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 7 2.1583 -3.0086 2.1079 7 6 1.3701 -2.7346 3.3502 8 6 0.9729 -4.1262 3.9379 9 6 2.0513 -5.0125 3.3358 10 1 3.0135 -4.8559 3.8236 11 6 2.0411 -4.4182 1.8763 12 1 1.0551 -4.6056 1.4510 13 6 3.0328 -5.3211 1.1968 14 6 2.8241 -6.6812 1.9299 15 7 1.8428 -6.4176 3.0338 16 6 2.1145 -7.2101 4.1407 17 6 2.5284 -6.6183 5.3397 18 7 2.7884 -7.3661 6.3975 19 6 2.6605 -8.6775 6.3327 20 6 2.2451 -9.2839 5.1332 21 6 2.1061 -10.6877 5.0587 22 1 2.4134 -11.3056 5.8894 23 6 1.5698 -11.2783 3.9074 24 7 1.3130 -10.5453 2.8559 25 14 1.2214 -13.1131 3.8747 26 1 0.2433 -13.4505 4.9397 27 1 0.6614 -13.4871 2.5510 28 1 2.4833 -13.8608 4.1067 29 7 1.9762 -8.5230 4.0632 30 1 -0.3633 0.4513 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0829 1.3432 -0.0708 34 1 1.5899 1.9163 -0.8525 35 1 1.7045 1.8724 0.9233 36 1 1.5611 -0.3871 2.0629 37 1 3.0797 -0.6611 1.1757 38 1 2.0658 -2.6213 0.0453 39 1 0.5472 -2.3474 0.9324 40 1 1.9810 -2.1864 4.0672 41 1 0.4749 -2.1624 3.1064 42 1 -0.0180 -4.4277 3.5985 43 1 1.0292 -4.1234 5.0264 44 1 4.0497 -4.9564 1.3425 45 1 2.8042 -5.4160 0.1352 46 1 3.7690 -7.0319 2.3448 47 1 2.4207 -7.4219 1.2393 48 1 2.6363 -5.5454 5.4003 49 1 2.8744 -9.2850 7.1997 50 1 0.9419 -10.9542 2.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164923721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:15 Heat of formation + Delta-G solvation = 99.963873 kcal Electronic energy + Delta-G solvation = -29001.930585 eV Core-core repulsion = 25258.393507 eV Total energy + Delta-G solvation = -3743.537078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.207 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84848 -38.89113 -37.83032 -36.09088 -34.03307 -32.27923 -32.24010 -31.12557 -28.94375 -27.89975 -27.60202 -26.94216 -25.78174 -23.93212 -22.58947 -22.16863 -21.83642 -20.80049 -19.92857 -19.41159 -17.61267 -16.79455 -16.20349 -15.87392 -15.61950 -15.32244 -15.30331 -14.98847 -14.80917 -14.60775 -14.03889 -13.90878 -13.50940 -13.32285 -12.99093 -12.85461 -12.69721 -12.37031 -12.29374 -12.01407 -11.89380 -11.75897 -11.61416 -11.53932 -11.45903 -11.32786 -11.30585 -10.89899 -10.79291 -10.68244 -10.52857 -10.42833 -9.96308 -9.82411 -9.50210 -9.37481 -8.67659 -8.49312 -8.34961 -7.54351 -7.16200 -6.47530 -4.71643 2.47023 2.94819 3.01265 3.03023 3.18717 3.37038 3.83073 3.83565 4.39436 4.46370 4.62920 4.74740 4.81747 4.86300 4.98870 5.08089 5.09379 5.23470 5.28138 5.30733 5.32910 5.37498 5.46274 5.55930 5.59322 5.63404 5.66360 5.70977 5.74752 5.77512 5.87043 5.93054 5.96414 6.07310 6.17055 6.19258 6.29940 6.38664 6.46550 6.50272 6.67212 6.70740 6.72417 6.84980 6.91866 7.03053 7.13768 7.36513 7.47602 7.88641 8.03519 8.45939 8.67328 9.27784 9.86107 10.12149 Molecular weight = 331.21amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002575 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.731391 B =10869.512834 C =11570.085664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.061 3.939 5 C 0.055 3.945 6 N -0.509 5.509 7 C 0.046 3.954 8 C -0.120 4.120 9 C 0.057 3.943 10 H 0.074 0.926 11 C 0.059 3.941 12 H 0.048 0.952 13 C -0.106 4.106 14 C 0.064 3.936 15 N -0.438 5.438 16 C 0.277 3.723 17 C -0.155 4.155 18 N -0.417 5.417 19 C -0.083 4.083 20 C 0.222 3.778 21 C -0.411 4.411 22 H 0.091 0.909 23 C 0.065 3.935 24 N -0.702 5.702 25 Si 0.912 3.088 26 H -0.263 1.263 27 H -0.276 1.276 28 H -0.263 1.263 29 N -0.456 5.456 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.132 0.868 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 16.015 -7.266 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.122 4.122 4 C -0.067 4.067 5 C -0.074 4.074 6 N -0.233 5.233 7 C -0.081 4.081 8 C -0.159 4.159 9 C -0.053 4.053 10 H 0.091 0.909 11 C -0.052 4.052 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.062 4.062 15 N -0.157 5.157 16 C 0.035 3.965 17 C -0.316 4.316 18 N -0.129 5.129 19 C -0.253 4.253 20 C 0.095 3.905 21 C -0.443 4.443 22 H 0.109 0.891 23 C -0.162 4.162 24 N -0.322 5.322 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.201 1.201 28 H -0.187 1.187 29 N -0.177 5.177 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.109 0.891 48 H 0.145 0.855 49 H 0.150 0.850 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.742 15.841 -8.079 17.798 hybrid contribution -0.745 -0.486 0.860 1.237 sum -1.487 15.356 -7.219 17.033 Atomic orbital electron populations 1.22457 0.87527 1.02481 1.00359 1.61909 1.07954 1.13874 1.43543 1.22362 1.00890 0.88597 1.00352 1.22070 1.00915 0.92992 0.90746 1.22259 0.97578 0.93130 0.94419 1.62684 1.52315 1.05068 1.03247 1.23659 0.95956 0.96882 0.91642 1.22288 0.98986 0.93532 1.01054 1.22842 0.98704 0.88134 0.95633 0.90859 1.21848 0.98919 0.87227 0.97163 0.93441 1.21761 0.99442 0.93987 0.99319 1.23460 0.94011 0.96284 0.92435 1.61162 1.46496 1.01262 1.06783 1.20835 0.92998 0.92435 0.90225 1.22672 1.17573 0.98930 0.92431 1.67568 1.09367 1.06804 1.29160 1.23066 1.12709 0.90741 0.98834 1.19258 0.89479 0.94326 0.87410 1.19605 1.33468 0.90326 1.00869 0.89099 1.26155 0.94453 1.00589 0.95027 1.70093 1.23926 1.36710 1.01438 0.86306 0.79847 0.81728 0.78570 1.18737 1.20101 1.18745 1.69214 1.18689 1.00778 1.29033 0.95696 0.91460 0.91096 0.91220 0.91427 0.95729 0.94790 0.89882 0.90023 0.94495 0.90022 0.92713 0.90577 0.90296 0.90733 0.90883 0.92947 0.89091 0.85495 0.85048 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.07 0.56 0.72 16 2 N -0.55 -5.02 5.02 -251.25 -1.26 -6.28 16 3 C 0.03 0.19 9.57 60.07 0.57 0.77 16 4 C 0.06 0.59 5.05 -3.82 -0.02 0.57 16 5 C 0.05 0.59 4.48 -3.82 -0.02 0.58 16 6 N -0.51 -6.39 5.19 -223.43 -1.16 -7.54 16 7 C 0.05 0.54 6.21 -0.57 0.00 0.54 16 8 C -0.12 -1.75 6.61 -25.52 -0.17 -1.92 16 9 C 0.06 0.97 1.41 -66.61 -0.09 0.87 16 10 H 0.07 1.32 6.60 -51.93 -0.34 0.98 16 11 C 0.06 0.85 2.39 -68.42 -0.16 0.69 16 12 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 13 C -0.11 -1.52 6.85 -26.49 -0.18 -1.71 16 14 C 0.06 1.19 6.61 -0.51 0.00 1.18 16 15 N -0.44 -9.03 5.38 -160.04 -0.86 -9.89 16 16 C 0.28 6.76 6.10 -155.02 -0.95 5.82 16 17 C -0.16 -3.72 10.02 -16.78 -0.17 -3.88 16 18 N -0.42 -10.58 10.47 -12.11 -0.13 -10.70 16 19 C -0.08 -2.13 10.97 -16.59 -0.18 -2.31 16 20 C 0.22 6.05 6.54 -84.84 -0.55 5.49 16 21 C -0.41 -10.59 9.15 -37.75 -0.35 -10.93 16 22 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 23 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 24 N -0.70 -18.02 11.51 55.55 0.64 -17.38 16 25 Si 0.91 17.86 29.56 -169.99 -5.03 12.83 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 28 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 29 N -0.46 -12.42 7.97 -10.14 -0.08 -12.50 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.07 0.59 6.47 -51.93 -0.34 0.26 16 33 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.03 0.33 7.49 -51.93 -0.39 -0.06 16 37 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 38 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.04 0.41 6.25 -51.93 -0.32 0.08 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.58 7.34 -51.92 -0.38 0.20 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 1.03 7.80 -51.93 -0.41 0.63 16 47 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 48 H 0.13 2.73 5.18 -52.48 -0.27 2.45 16 49 H 0.13 3.04 8.06 -52.48 -0.42 2.62 16 50 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -29.45 387.40 -12.12 -41.57 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.28 Total: 6.09 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.81 Total: -2.03 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -2.85 Total: -64.30 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.45 -12.12 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164923721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.537 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds