Wall clock time and date at job start Sat Apr 11 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 120.00337 * 2 1 4 4 H 1.08000 * 120.00224 * 202.64288 * 3 2 1 5 5 C 1.38814 * 119.99913 * 22.64578 * 3 2 1 6 6 N 1.31621 * 119.99662 * 13.99462 * 5 3 2 7 7 Si 1.86801 * 119.99923 * 193.99948 * 5 3 2 8 8 H 1.48502 * 109.46983 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.46994 * 119.99729 * 7 5 3 10 10 H 1.48491 * 109.46887 * 239.99796 * 7 5 3 11 11 C 1.46504 * 119.99699 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46785 * 90.00124 * 11 2 1 13 13 H 1.09002 * 109.49979 * 55.06821 * 12 11 2 14 14 C 1.53045 * 109.52124 * 175.14296 * 12 11 2 15 15 C 1.53036 * 109.53805 * 181.32946 * 14 12 11 16 16 C 1.53195 * 109.31552 * 298.63762 * 15 14 12 17 17 N 1.46919 * 108.77368 * 54.63333 * 16 15 14 18 18 C 1.34781 * 120.63193 * 126.37244 * 17 16 15 19 19 O 1.21282 * 119.99863 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99694 * 0.02562 * 18 17 16 21 21 C 1.53005 * 109.47006 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.46983 * 180.02562 * 21 20 18 23 23 C 1.38220 * 119.61941 * 125.00411 * 22 21 20 24 24 C 1.38636 * 119.16184 * 179.97438 * 23 22 21 25 25 C 1.38668 * 118.41848 * 359.97438 * 24 23 22 26 26 C 1.38188 * 119.16498 * 359.97438 * 25 24 23 27 27 N 1.31857 * 119.61771 * 304.72148 * 22 21 20 28 28 C 1.46929 * 118.74199 * 306.39307 * 17 16 15 29 29 H 1.08999 * 109.47060 * 275.24972 * 1 2 3 30 30 H 1.09002 * 109.47052 * 35.24797 * 1 2 3 31 31 H 1.08997 * 109.47547 * 155.24788 * 1 2 3 32 32 H 0.97000 * 119.99292 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47209 * 330.00064 * 11 2 1 34 34 H 1.08997 * 109.47010 * 209.99766 * 11 2 1 35 35 H 1.08994 * 109.46364 * 301.35568 * 14 12 11 36 36 H 1.09009 * 109.45663 * 61.31138 * 14 12 11 37 37 H 1.09001 * 109.50047 * 58.58867 * 15 14 12 38 38 H 1.09003 * 109.50335 * 178.65359 * 15 14 12 39 39 H 1.08996 * 109.58560 * 174.41910 * 16 15 14 40 40 H 1.08998 * 109.58303 * 294.84513 * 16 15 14 41 41 H 1.08993 * 109.47033 * 300.00491 * 20 18 17 42 42 H 1.09002 * 109.46612 * 60.00563 * 20 18 17 43 43 H 1.09000 * 109.46968 * 300.00356 * 21 20 18 44 44 H 1.08998 * 109.46710 * 60.00065 * 21 20 18 45 45 H 1.07998 * 120.42037 * 359.94938 * 23 22 21 46 46 H 1.07999 * 120.79284 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.42123 * 180.02562 * 25 24 23 48 48 H 1.08003 * 119.61384 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.58392 * 293.82270 * 28 17 16 50 50 H 1.09002 * 109.58959 * 173.39558 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1673 1.2219 -0.3601 5 6 1.5360 2.3417 0.4629 6 7 0.4160 2.2623 1.1496 7 14 2.2996 4.0098 0.1109 8 1 3.5474 3.8275 -0.6732 9 1 1.3427 4.8382 -0.6660 10 1 2.6157 4.6897 1.3926 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 1 2.9652 -0.9147 -1.9812 14 6 3.3208 -2.9712 -1.4444 15 6 3.6037 -3.3949 -2.8874 16 6 2.2808 -3.7179 -3.5892 17 7 1.3846 -2.5604 -3.4648 18 6 0.8193 -2.0090 -4.5571 19 8 0.0816 -1.0534 -4.4411 20 6 1.1041 -2.5800 -5.9224 21 6 0.3451 -1.7758 -6.9799 22 6 0.6293 -2.3472 -8.3451 23 6 -0.4211 -2.7348 -9.1556 24 6 -0.1488 -3.2587 -10.4099 25 6 1.1758 -3.3731 -10.8040 26 6 2.1733 -2.9636 -9.9397 27 7 1.8769 -2.4664 -8.7548 28 6 1.1165 -2.0150 -2.1271 29 1 -0.3633 0.0940 1.0233 30 1 -0.3633 0.8393 -0.5931 31 1 -0.3634 -0.9332 -0.4303 32 1 -0.0131 3.0700 1.4727 33 1 1.6083 -2.0282 0.5147 34 1 3.1498 -1.1383 0.5143 35 1 4.2622 -2.7645 -0.9354 36 1 2.7968 -3.7744 -0.9261 37 1 4.1056 -2.5828 -3.4134 38 1 4.2420 -4.2785 -2.8889 39 1 2.4671 -3.9242 -4.6431 40 1 1.8213 -4.5880 -3.1201 41 1 2.1739 -2.5251 -6.1232 42 1 0.7810 -3.6205 -5.9556 43 1 -0.7249 -1.8304 -6.7791 44 1 0.6684 -0.7355 -6.9464 45 1 -1.4410 -2.6312 -8.8159 46 1 -0.9492 -3.5695 -11.0649 47 1 1.4248 -3.7764 -11.7744 48 1 3.2074 -3.0490 -10.2394 49 1 0.5620 -2.7462 -1.5388 50 1 0.5346 -1.0977 -2.2164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317040021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:48 Heat of formation + Delta-G solvation = 11.987260 kcal Electronic energy + Delta-G solvation = -28520.096586 eV Core-core repulsion = 24740.451805 eV Total energy + Delta-G solvation = -3779.644781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56424 -39.90982 -37.58921 -35.43814 -34.29943 -32.93998 -32.62823 -31.63744 -30.54486 -29.78794 -26.65703 -25.76358 -25.42414 -24.30878 -23.72803 -22.43004 -21.79470 -20.74856 -19.70818 -18.63167 -17.42927 -16.76911 -16.55307 -16.47024 -15.73779 -15.54637 -15.44302 -14.88311 -14.54852 -14.29910 -14.02268 -13.75179 -13.64582 -13.54046 -13.21856 -13.13953 -12.89996 -12.61719 -12.42072 -12.26909 -12.08446 -11.82743 -11.50011 -11.27241 -11.21224 -10.89625 -10.84048 -10.75216 -10.58930 -10.38203 -10.17787 -10.12360 -9.87521 -9.80134 -9.72839 -9.68890 -9.50358 -9.21482 -8.45739 -8.31935 -6.62580 -5.61685 -3.07670 0.80587 0.97773 2.86595 3.19920 3.45397 3.51868 3.52575 3.54578 4.01143 4.36781 4.53030 4.58821 4.72974 4.76586 4.79752 4.85080 4.99489 5.04320 5.08030 5.14025 5.29273 5.39694 5.41261 5.46174 5.49004 5.55503 5.65780 5.70250 5.79535 5.80790 5.86907 5.95561 5.98732 5.99147 6.14595 6.17599 6.23151 6.33299 6.41266 6.46921 6.62719 6.79804 6.84388 6.91924 7.04701 7.50174 7.66206 7.72652 7.83288 7.91461 8.43265 8.50587 9.34356 9.98542 10.47040 11.42838 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002658 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.776748 B =10530.390030 C =11489.014322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.601 5.601 3 C -0.249 4.249 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.159 3.841 12 C -0.122 4.122 13 H 0.072 0.928 14 C -0.113 4.113 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.612 5.612 18 C 0.510 3.490 19 O -0.536 6.536 20 C -0.128 4.128 21 C -0.056 4.056 22 C 0.135 3.865 23 C -0.170 4.170 24 C -0.074 4.074 25 C -0.183 4.183 26 C 0.102 3.898 27 N -0.481 5.481 28 C 0.122 3.878 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.000 1.000 32 H 0.250 0.750 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.155 0.845 49 H 0.056 0.944 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -18.031 -20.617 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.379 4.379 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.219 1.219 11 C 0.031 3.969 12 C -0.144 4.144 13 H 0.091 0.909 14 C -0.152 4.152 15 C -0.172 4.172 16 C -0.016 4.016 17 N -0.345 5.345 18 C 0.298 3.702 19 O -0.413 6.413 20 C -0.168 4.168 21 C -0.094 4.094 22 C -0.002 4.002 23 C -0.189 4.189 24 C -0.100 4.100 25 C -0.203 4.203 26 C -0.055 4.055 27 N -0.191 5.191 28 C 0.001 3.999 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.172 0.828 49 H 0.074 0.926 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.218 -17.098 -19.912 26.339 hybrid contribution -0.217 0.573 -0.858 1.055 sum 2.000 -16.525 -20.770 26.617 Atomic orbital electron populations 1.20844 0.82702 0.95528 0.99281 1.43887 1.01782 1.00654 1.86032 1.19174 0.97944 0.85584 1.35207 0.91606 1.24987 0.97994 0.98402 0.98358 1.70085 1.19878 1.26845 1.38448 0.86231 0.78541 0.84649 0.77419 1.20398 1.21647 1.21873 1.20710 0.96221 0.88403 0.91573 1.22267 0.94919 0.96402 1.00845 0.90915 1.21546 1.00194 0.98100 0.95337 1.21907 0.96451 1.01540 0.97296 1.21709 0.90534 0.88250 1.01075 1.48246 1.46906 1.31839 1.07532 1.20601 0.80190 0.83394 0.86038 1.90738 1.36964 1.27078 1.86489 1.21560 1.03240 1.00412 0.91592 1.20320 1.01451 1.00277 0.87372 1.21364 0.88419 0.94083 0.96330 1.22048 1.00741 1.00938 0.95212 1.21601 0.96980 0.95665 0.95748 1.22133 0.93899 1.02791 1.01504 1.22782 0.99932 0.93593 0.89213 1.67504 1.21664 1.13497 1.16411 1.21812 0.97893 0.99913 0.80304 0.95279 0.94151 0.98153 0.93935 0.94659 0.93216 0.91838 0.92259 0.91565 0.91256 0.90213 0.91643 0.88048 0.89501 0.89412 0.88867 0.84627 0.84901 0.84947 0.82770 0.92616 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 7.95 59.84 0.48 4.61 16 2 N -0.60 -15.46 2.76 -181.12 -0.50 -15.96 16 3 C -0.25 -7.08 9.65 -15.06 -0.15 -7.23 16 4 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 5 C 0.00 0.02 5.08 -17.43 -0.09 -0.07 16 6 N -0.91 -27.47 10.74 55.49 0.60 -26.87 16 7 Si 0.90 22.86 29.58 -169.99 -5.03 17.83 16 8 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 C 0.16 3.26 5.14 -4.04 -0.02 3.24 16 12 C -0.12 -2.14 2.54 -90.50 -0.23 -2.37 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.11 -1.50 5.17 -26.69 -0.14 -1.63 16 15 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 16 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 17 N -0.61 -9.09 2.97 -172.77 -0.51 -9.60 16 18 C 0.51 8.02 7.70 -10.98 -0.08 7.93 16 19 O -0.54 -10.81 15.40 5.56 0.09 -10.72 16 20 C -0.13 -1.46 3.91 -27.88 -0.11 -1.57 16 21 C -0.06 -0.64 4.90 -27.88 -0.14 -0.78 16 22 C 0.14 1.42 6.17 -82.59 -0.51 0.91 16 23 C -0.17 -1.45 9.71 -39.44 -0.38 -1.83 16 24 C -0.07 -0.52 10.18 -39.28 -0.40 -0.92 16 25 C -0.18 -1.26 10.11 -39.44 -0.40 -1.66 16 26 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 27 N -0.48 -5.27 9.89 -9.48 -0.09 -5.36 16 28 C 0.12 2.15 4.45 -3.71 -0.02 2.13 16 29 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 30 H 0.04 1.14 7.35 -51.93 -0.38 0.75 16 31 H 0.00 0.00 6.28 -51.93 -0.33 -0.33 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.13 7.50 -51.93 -0.39 0.74 16 42 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 43 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 44 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 45 H 0.14 0.93 7.95 -52.49 -0.42 0.51 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 48 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 49 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 50 H 0.10 2.28 5.35 -51.93 -0.28 2.00 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -34.52 393.92 -10.42 -44.94 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.33 Total: -1.12 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.57 Total: 0.94 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.51 Total: -57.80 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.52 -10.42 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317040021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.926 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds