Wall clock time and date at job start Sat Apr 11 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00234 * 2 1 4 4 C 1.39713 * 119.99341 * 179.97438 * 2 1 3 5 5 C 1.39027 * 119.99999 * 174.30497 * 4 2 1 6 6 C 1.38196 * 120.21582 * 180.02562 * 5 4 2 7 7 C 1.38025 * 120.23404 * 359.67374 * 6 5 4 8 8 C 1.39574 * 119.99764 * 0.59976 * 7 6 5 9 9 C 1.47864 * 120.10831 * 179.70068 * 8 7 6 10 10 O 1.21556 * 120.00175 * 179.73097 * 9 8 7 11 11 N 1.34778 * 119.99965 * 359.72014 * 9 8 7 12 12 C 1.46500 * 119.99945 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.01519 * 34.94356 * 12 11 9 14 14 C 1.53876 * 110.03454 * 273.55236 * 12 11 9 15 15 C 1.54263 * 106.59524 * 240.71731 * 14 12 11 16 16 C 1.54891 * 104.20179 * 336.38648 * 15 14 12 17 17 C 1.54264 * 110.02839 * 156.38563 * 12 11 9 18 18 H 1.08995 * 110.49031 * 24.08330 * 17 12 11 19 19 C 1.53009 * 110.48568 * 261.57292 * 17 12 11 20 20 N 1.46498 * 109.46996 * 175.00312 * 19 17 12 21 21 C 1.36944 * 119.99688 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00190 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99564 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00160 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99618 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46969 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46904 * 120.00056 * 25 23 21 28 28 H 1.48493 * 109.47377 * 240.00125 * 25 23 21 29 29 C 1.38641 * 120.00573 * 354.27941 * 4 2 1 30 30 H 1.09001 * 109.47552 * 185.05824 * 1 2 3 31 31 H 1.08999 * 109.47202 * 305.06512 * 1 2 3 32 32 H 1.09005 * 109.46575 * 65.05423 * 1 2 3 33 33 H 1.09006 * 109.46798 * 269.99452 * 3 2 1 34 34 H 1.08998 * 109.47175 * 29.99789 * 3 2 1 35 35 H 1.09008 * 109.47185 * 149.99900 * 3 2 1 36 36 H 1.07996 * 119.89004 * 359.97428 * 5 4 2 37 37 H 1.08007 * 119.88166 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.00496 * 180.30206 * 7 6 5 39 39 H 0.97000 * 120.00037 * 0.02562 * 11 9 8 40 40 H 1.09004 * 110.03199 * 0.02562 * 14 12 11 41 41 H 1.08995 * 110.02884 * 121.43310 * 14 12 11 42 42 H 1.08998 * 110.48965 * 95.06859 * 15 14 12 43 43 H 1.09001 * 110.48331 * 217.71385 * 15 14 12 44 44 H 1.08997 * 110.75721 * 279.63756 * 16 15 14 45 45 H 1.08999 * 110.75902 * 156.25684 * 16 15 14 46 46 H 1.08993 * 109.47001 * 295.00036 * 19 17 12 47 47 H 1.09001 * 109.46921 * 55.00324 * 19 17 12 48 48 H 0.97002 * 120.00202 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00499 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.11220 * 0.04610 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1635 -1.2100 0.0005 5 6 3.5486 -1.2132 -0.1189 6 6 4.2439 -2.4075 -0.1194 7 6 3.5687 -3.6049 0.0054 8 6 2.1777 -3.6129 0.1201 9 6 1.4513 -4.8945 0.2473 10 8 0.2403 -4.8990 0.3521 11 7 2.1320 -6.0578 0.2469 12 6 1.4123 -7.3276 0.3735 13 1 0.4507 -7.2638 -0.1357 14 6 1.2004 -7.6676 1.8592 15 6 1.9204 -9.0084 2.1114 16 6 1.9828 -9.6748 0.7145 17 6 2.2536 -8.4736 -0.2252 18 1 3.3120 -8.2133 -0.2195 19 6 1.7895 -8.7918 -1.6481 20 7 2.6768 -9.7974 -2.2377 21 6 2.4563 -10.2407 -3.5145 22 1 1.6281 -9.8493 -4.0866 23 6 3.2973 -11.1932 -4.0734 24 7 4.3063 -11.6706 -3.3761 25 14 2.9961 -11.7985 -5.8148 26 1 1.8068 -11.1110 -6.3790 27 1 4.1841 -11.5009 -6.6546 28 1 2.7583 -13.2641 -5.7953 29 6 1.4754 -2.4076 0.1207 30 1 -0.3634 -1.0236 0.0906 31 1 -0.3633 0.5904 0.8411 32 1 -0.3633 0.4335 -0.9319 33 1 2.3793 1.5832 -1.0277 34 1 1.6085 2.0283 0.5138 35 1 3.1500 1.1383 0.5139 36 1 4.0829 -0.2793 -0.2125 37 1 5.3199 -2.4037 -0.2130 38 1 4.1162 -4.5358 0.0094 39 1 3.0984 -6.0542 0.1636 40 1 1.6327 -6.8876 2.4861 41 1 0.1361 -7.7697 2.0707 42 1 2.9252 -8.8354 2.4967 43 1 1.3466 -9.6253 2.8029 44 1 1.0325 -10.1497 0.4703 45 1 2.7995 -10.3950 0.6662 46 1 0.7707 -9.1779 -1.6201 47 1 1.8178 -7.8841 -2.2509 48 1 3.4209 -10.1487 -1.7241 49 1 4.8938 -12.3364 -3.7665 50 1 0.3995 -2.4074 0.2133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482696421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:37 Heat of formation + Delta-G solvation = 6.637084 kcal Electronic energy + Delta-G solvation = -27951.506219 eV Core-core repulsion = 24171.629437 eV Total energy + Delta-G solvation = -3779.876782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45414 -39.32531 -37.83703 -36.28884 -34.46095 -33.53391 -31.50189 -31.36957 -30.33199 -28.67945 -28.53394 -27.40373 -25.08100 -24.58201 -23.47647 -22.03698 -21.60500 -20.71716 -19.99939 -19.49157 -18.21465 -17.08058 -16.57912 -16.25490 -15.86975 -15.66564 -15.43325 -15.08373 -14.62339 -14.53815 -14.28746 -14.11124 -13.84980 -13.62991 -13.35356 -13.15256 -12.92706 -12.82648 -12.70288 -12.58626 -12.31534 -12.06246 -11.84374 -11.69352 -11.31778 -11.18154 -10.92272 -10.81414 -10.74524 -10.42181 -10.34336 -10.26887 -10.16649 -9.95068 -9.83498 -9.67286 -9.16910 -8.87418 -8.84220 -7.58724 -6.88458 -5.74182 -3.02047 0.78788 1.34484 2.76543 2.90193 3.25709 3.45270 3.51305 3.53396 3.82353 4.52246 4.55816 4.59161 4.67876 4.78491 4.87889 4.88224 4.97236 5.02191 5.06611 5.10340 5.22253 5.23416 5.32221 5.40934 5.45692 5.50518 5.59435 5.66687 5.68611 5.73552 5.82845 5.86012 5.95411 5.97302 6.09837 6.20437 6.24267 6.26366 6.28746 6.33620 6.48751 6.56217 6.59265 6.65955 6.82548 6.90451 6.95082 7.16511 7.59154 7.74096 8.27893 8.45062 9.56467 10.14398 10.49619 11.48881 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002467 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.319425 B =11346.702991 C =12474.399118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.204 3.796 5 C -0.176 4.176 6 C -0.078 4.078 7 C -0.143 4.143 8 C -0.084 4.084 9 C 0.557 3.443 10 O -0.541 6.541 11 N -0.712 5.712 12 C 0.146 3.854 13 H 0.093 0.907 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.102 4.102 18 H 0.079 0.921 19 C 0.161 3.839 20 N -0.731 5.731 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.400 0.600 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 23.879 12.942 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.352 5.352 3 C -0.048 4.048 4 C 0.103 3.897 5 C -0.199 4.199 6 C -0.097 4.097 7 C -0.163 4.163 8 C -0.087 4.087 9 C 0.344 3.656 10 O -0.419 6.419 11 N -0.363 5.363 12 C 0.042 3.958 13 H 0.111 0.889 14 C -0.170 4.170 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.121 4.121 18 H 0.097 0.903 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.163 4.163 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.385 24.017 12.844 27.445 hybrid contribution 0.666 -0.392 -0.941 1.218 sum -2.719 23.624 11.903 26.593 Atomic orbital electron populations 1.21744 0.79323 1.03530 1.01018 1.46276 1.05099 1.02925 1.80934 1.21596 0.97115 0.84902 1.01162 1.17711 0.91251 0.85685 0.95067 1.20833 0.92126 0.98876 1.08029 1.20838 0.99820 0.91528 0.97484 1.21111 0.92962 0.98575 1.03680 1.19714 0.93624 0.92935 1.02462 1.18299 0.87091 0.83847 0.76362 1.90746 1.13727 1.87586 1.49859 1.46116 1.10841 1.05631 1.73716 1.21729 0.96674 0.81734 0.95696 0.88878 1.22542 1.01009 0.97588 0.95821 1.22388 1.00141 0.95858 0.97870 1.22455 1.02701 0.96885 0.92773 1.22433 0.99492 0.93796 0.96392 0.90252 1.20689 0.93866 0.92413 0.89731 1.42333 1.33406 1.47043 1.14684 1.19284 1.09727 1.17291 0.90389 0.91215 1.24723 0.97997 0.99943 0.98441 1.69661 1.18591 1.33365 1.36709 0.86127 0.77267 0.78338 0.84560 1.20579 1.21920 1.21896 1.20785 1.00514 0.89732 1.05306 0.90026 0.92571 0.92875 0.93405 0.91560 0.91379 0.85772 0.85418 0.85740 0.76382 0.91738 0.91334 0.91854 0.91838 0.91039 0.90711 0.96100 0.96427 0.78283 0.93634 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.62 59.85 0.64 1.26 16 2 N -0.64 -5.46 3.41 -187.58 -0.64 -6.10 16 3 C 0.10 0.55 10.10 59.84 0.60 1.15 16 4 C 0.20 2.13 6.53 -83.82 -0.55 1.58 16 5 C -0.18 -1.62 9.16 -39.30 -0.36 -1.98 16 6 C -0.08 -0.72 10.02 -39.67 -0.40 -1.12 16 7 C -0.14 -1.51 9.54 -39.16 -0.37 -1.88 16 8 C -0.08 -1.06 5.87 -104.99 -0.62 -1.68 16 9 C 0.56 8.18 7.76 -12.32 -0.10 8.08 16 10 O -0.54 -9.58 16.02 5.32 0.09 -9.49 16 11 N -0.71 -9.46 4.94 -53.66 -0.27 -9.73 16 12 C 0.15 2.11 2.80 -66.81 -0.19 1.92 16 13 H 0.09 1.53 7.30 -51.93 -0.38 1.15 16 14 C -0.13 -1.67 6.59 -25.61 -0.17 -1.84 16 15 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 16 C -0.11 -1.66 6.19 -24.73 -0.15 -1.81 16 17 C -0.10 -1.62 2.58 -88.95 -0.23 -1.85 16 18 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 19 C 0.16 3.29 5.54 -4.04 -0.02 3.27 16 20 N -0.73 -18.49 5.49 -59.91 -0.33 -18.82 16 21 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 25 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 29 C -0.14 -1.70 8.86 -38.97 -0.35 -2.05 16 30 H 0.08 0.65 5.31 -51.93 -0.28 0.37 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 35 H 0.07 0.34 6.45 -51.92 -0.33 0.01 16 36 H 0.12 0.88 6.29 -52.49 -0.33 0.55 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 1.11 6.40 -52.49 -0.34 0.78 16 39 H 0.40 4.52 6.37 -40.82 -0.26 4.26 16 40 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.02 0.44 8.02 -51.93 -0.42 0.03 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 10.07 7.64 -40.82 -0.31 9.76 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.14 1.68 5.33 -52.49 -0.28 1.40 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -33.69 398.39 -10.04 -43.73 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.92 Total: 10.30 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.67 Total: -6.01 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.51 Total: -62.20 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.69 -10.04 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482696421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.368 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds