Wall clock time and date at job start Sat Apr 11 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00234 * 2 1 4 4 C 1.39713 * 119.99341 * 179.97438 * 2 1 3 5 5 C 1.39027 * 119.99999 * 174.30497 * 4 2 1 6 6 C 1.38196 * 120.21582 * 180.02562 * 5 4 2 7 7 C 1.38025 * 120.23404 * 359.67374 * 6 5 4 8 8 C 1.39574 * 119.99764 * 0.59976 * 7 6 5 9 9 C 1.47864 * 120.10831 * 179.70068 * 8 7 6 10 10 O 1.21556 * 120.00175 * 179.73097 * 9 8 7 11 11 N 1.34778 * 119.99965 * 359.72014 * 9 8 7 12 12 C 1.46500 * 119.99945 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.01519 * 34.94356 * 12 11 9 14 14 C 1.53876 * 110.03454 * 273.55236 * 12 11 9 15 15 C 1.54263 * 106.59524 * 240.71731 * 14 12 11 16 16 C 1.54891 * 104.20179 * 336.38648 * 15 14 12 17 17 C 1.54264 * 110.02839 * 156.38563 * 12 11 9 18 18 H 1.08995 * 110.49031 * 24.08330 * 17 12 11 19 19 C 1.53009 * 110.48568 * 261.57292 * 17 12 11 20 20 N 1.46498 * 109.46996 * 175.00312 * 19 17 12 21 21 C 1.36944 * 119.99688 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00190 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99564 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00160 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99618 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46969 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46904 * 120.00056 * 25 23 21 28 28 H 1.48493 * 109.47377 * 240.00125 * 25 23 21 29 29 C 1.38641 * 120.00573 * 354.27941 * 4 2 1 30 30 H 1.09001 * 109.47552 * 185.05824 * 1 2 3 31 31 H 1.08999 * 109.47202 * 305.06512 * 1 2 3 32 32 H 1.09005 * 109.46575 * 65.05423 * 1 2 3 33 33 H 1.09006 * 109.46798 * 269.99452 * 3 2 1 34 34 H 1.08998 * 109.47175 * 29.99789 * 3 2 1 35 35 H 1.09008 * 109.47185 * 149.99900 * 3 2 1 36 36 H 1.07996 * 119.89004 * 359.97428 * 5 4 2 37 37 H 1.08007 * 119.88166 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.00496 * 180.30206 * 7 6 5 39 39 H 0.97000 * 120.00037 * 0.02562 * 11 9 8 40 40 H 1.09004 * 110.03199 * 0.02562 * 14 12 11 41 41 H 1.08995 * 110.02884 * 121.43310 * 14 12 11 42 42 H 1.08998 * 110.48965 * 95.06859 * 15 14 12 43 43 H 1.09001 * 110.48331 * 217.71385 * 15 14 12 44 44 H 1.08997 * 110.75721 * 279.63756 * 16 15 14 45 45 H 1.08999 * 110.75902 * 156.25684 * 16 15 14 46 46 H 1.08993 * 109.47001 * 295.00036 * 19 17 12 47 47 H 1.09001 * 109.46921 * 55.00324 * 19 17 12 48 48 H 0.97002 * 120.00202 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00499 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.11220 * 0.04610 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1635 -1.2100 0.0005 5 6 3.5486 -1.2132 -0.1189 6 6 4.2439 -2.4075 -0.1194 7 6 3.5687 -3.6049 0.0054 8 6 2.1777 -3.6129 0.1201 9 6 1.4513 -4.8945 0.2473 10 8 0.2403 -4.8990 0.3521 11 7 2.1320 -6.0578 0.2469 12 6 1.4123 -7.3276 0.3735 13 1 0.4507 -7.2638 -0.1357 14 6 1.2004 -7.6676 1.8592 15 6 1.9204 -9.0084 2.1114 16 6 1.9828 -9.6748 0.7145 17 6 2.2536 -8.4736 -0.2252 18 1 3.3120 -8.2133 -0.2195 19 6 1.7895 -8.7918 -1.6481 20 7 2.6768 -9.7974 -2.2377 21 6 2.4563 -10.2407 -3.5145 22 1 1.6281 -9.8493 -4.0866 23 6 3.2973 -11.1932 -4.0734 24 7 4.3063 -11.6706 -3.3761 25 14 2.9961 -11.7985 -5.8148 26 1 1.8068 -11.1110 -6.3790 27 1 4.1841 -11.5009 -6.6546 28 1 2.7583 -13.2641 -5.7953 29 6 1.4754 -2.4076 0.1207 30 1 -0.3634 -1.0236 0.0906 31 1 -0.3633 0.5904 0.8411 32 1 -0.3633 0.4335 -0.9319 33 1 2.3793 1.5832 -1.0277 34 1 1.6085 2.0283 0.5138 35 1 3.1500 1.1383 0.5139 36 1 4.0829 -0.2793 -0.2125 37 1 5.3199 -2.4037 -0.2130 38 1 4.1162 -4.5358 0.0094 39 1 3.0984 -6.0542 0.1636 40 1 1.6327 -6.8876 2.4861 41 1 0.1361 -7.7697 2.0707 42 1 2.9252 -8.8354 2.4967 43 1 1.3466 -9.6253 2.8029 44 1 1.0325 -10.1497 0.4703 45 1 2.7995 -10.3950 0.6662 46 1 0.7707 -9.1779 -1.6201 47 1 1.8178 -7.8841 -2.2509 48 1 3.4209 -10.1487 -1.7241 49 1 4.8938 -12.3364 -3.7665 50 1 0.3995 -2.4074 0.2133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482696421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:36 Heat of formation + Delta-G solvation = -14.015020 kcal Electronic energy + Delta-G solvation = -27952.401762 eV Core-core repulsion = 24171.629437 eV Total energy + Delta-G solvation = -3780.772325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.46995 -40.26237 -39.03471 -37.01358 -36.33009 -34.74860 -33.30395 -32.30313 -31.08430 -30.21170 -29.27667 -28.45241 -26.36176 -25.72748 -24.64113 -23.67941 -22.40189 -21.77147 -21.21442 -20.60333 -19.38866 -18.82822 -17.73023 -17.24379 -16.75893 -16.52262 -16.40716 -16.23363 -15.97801 -15.63290 -15.60193 -15.17235 -15.06687 -14.88488 -14.64377 -14.55193 -14.41149 -13.53587 -13.45174 -13.37148 -13.17446 -13.15621 -12.93188 -12.87090 -12.77574 -12.55288 -12.45544 -12.13496 -11.96581 -11.94071 -11.85926 -11.63122 -11.59163 -11.42681 -11.01576 -10.92994 -10.86879 -10.16779 -9.86874 -9.00156 -8.26561 -7.95903 -5.24170 -0.08919 0.57390 1.46879 1.47134 1.57486 1.88909 2.04922 2.29626 2.55124 2.95906 3.36953 3.43646 3.66380 3.70769 3.87209 3.90342 4.05719 4.15102 4.26127 4.30941 4.40383 4.41292 4.47500 4.49850 4.54389 4.56922 4.58551 4.64563 4.68955 4.74246 4.77152 4.85082 4.91122 4.97850 5.00780 5.01258 5.09998 5.18307 5.22699 5.24753 5.33268 5.40959 5.46610 5.50770 5.52169 5.60125 5.79101 6.26757 6.29097 6.47308 6.52392 7.17364 7.33737 8.07848 8.34197 9.27456 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002467 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.319425 B =11346.702991 C =12474.399118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.645 5.645 3 C 0.090 3.910 4 C 0.197 3.803 5 C -0.173 4.173 6 C -0.076 4.076 7 C -0.148 4.148 8 C -0.104 4.104 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.152 3.848 13 H 0.070 0.930 14 C -0.123 4.123 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.090 4.090 18 H 0.086 0.914 19 C 0.162 3.838 20 N -0.738 5.738 21 C -0.246 4.246 22 H 0.069 0.931 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.971 3.029 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.162 4.162 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.411 0.589 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.008 0.992 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 25.521 13.444 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C -0.052 4.052 4 C 0.095 3.905 5 C -0.195 4.195 6 C -0.094 4.094 7 C -0.169 4.169 8 C -0.107 4.107 9 C 0.343 3.657 10 O -0.462 6.462 11 N -0.355 5.355 12 C 0.047 3.953 13 H 0.088 0.912 14 C -0.162 4.162 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.110 4.110 18 H 0.104 0.896 19 C 0.035 3.965 20 N -0.381 5.381 21 C -0.378 4.378 22 H 0.086 0.914 23 C -0.264 4.264 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.185 4.185 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.026 0.974 48 H 0.210 0.790 49 H 0.061 0.939 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.248 25.699 13.354 29.048 hybrid contribution 0.281 -0.794 -1.112 1.395 sum -1.967 24.905 12.242 27.820 Atomic orbital electron populations 1.21812 0.79036 1.02987 1.02124 1.46540 1.05633 1.03235 1.80297 1.21790 0.97590 0.83921 1.01908 1.17868 0.92008 0.85823 0.94788 1.21187 0.91633 1.00106 1.06589 1.21204 1.01265 0.90825 0.96095 1.21312 0.92047 0.99993 1.03511 1.19642 0.94592 0.91873 1.04633 1.18697 0.86753 0.84758 0.75464 1.90714 1.15436 1.88163 1.51871 1.46022 1.11328 1.04972 1.73198 1.21544 0.95325 0.81698 0.96723 0.91209 1.22474 1.01289 0.98202 0.94243 1.22318 1.01251 0.95093 0.96167 1.22408 1.01624 0.96269 0.94513 1.22276 0.99859 0.95025 0.93793 0.89605 1.20766 0.92859 0.90650 0.92183 1.42461 1.33833 1.47782 1.14017 1.19610 1.09464 1.17152 0.91600 0.91350 1.25510 0.98079 1.00488 1.02329 1.69797 1.19470 1.34000 1.38303 0.85110 0.77314 0.77559 0.79996 1.19548 1.21765 1.21805 1.20797 1.00176 0.90628 1.06896 0.91548 0.90967 0.92062 0.92831 0.89976 0.90461 0.83208 0.82500 0.84407 0.75090 0.90866 0.91320 0.90333 0.90165 0.92133 0.91812 0.96741 0.97363 0.79016 0.93888 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.62 127.77 1.36 2.51 16 2 N -0.65 -10.18 3.41 -747.38 -2.55 -12.73 16 3 C 0.09 0.81 10.10 127.77 1.29 2.10 16 4 C 0.20 3.94 6.53 38.17 0.25 4.19 16 5 C -0.17 -2.78 9.16 22.45 0.21 -2.57 16 6 C -0.08 -1.20 10.02 22.21 0.22 -0.98 16 7 C -0.15 -2.94 9.54 22.54 0.21 -2.72 16 8 C -0.10 -2.65 5.87 -20.10 -0.12 -2.77 16 9 C 0.55 16.73 7.76 86.79 0.67 17.40 16 10 O -0.58 -21.57 16.02 -3.89 -0.06 -21.63 16 11 N -0.70 -18.68 4.94 -441.95 -2.18 -20.86 16 12 C 0.15 4.41 2.80 45.72 0.13 4.54 16 13 H 0.07 2.37 7.30 -2.39 -0.02 2.36 16 14 C -0.12 -3.02 6.59 31.32 0.21 -2.81 16 15 C -0.11 -2.50 6.83 31.67 0.22 -2.28 16 16 C -0.11 -3.26 6.19 31.89 0.20 -3.07 16 17 C -0.09 -2.87 2.58 -9.71 -0.03 -2.90 16 18 H 0.09 2.64 7.73 -2.39 -0.02 2.63 16 19 C 0.16 6.78 5.54 86.38 0.48 7.26 16 20 N -0.74 -37.96 5.49 -343.44 -1.89 -39.84 16 21 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 24 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 25 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 C -0.16 -4.02 8.86 22.67 0.20 -3.82 16 30 H 0.07 1.13 5.31 -2.39 -0.01 1.12 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.08 0.49 8.07 -2.39 -0.02 0.47 16 35 H 0.08 0.55 6.45 -2.38 -0.02 0.54 16 36 H 0.15 1.58 6.29 -2.91 -0.02 1.56 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.14 2.23 6.40 -2.91 -0.02 2.22 16 39 H 0.41 8.97 6.37 -92.71 -0.59 8.38 16 40 H 0.07 1.70 7.92 -2.39 -0.02 1.68 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.91 7.97 -2.39 -0.02 1.90 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.01 0.63 8.02 -2.39 -0.02 0.61 16 47 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.38 20.15 7.64 -92.71 -0.71 19.44 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 50 H 0.12 3.29 5.33 -2.91 -0.02 3.27 16 Total: -1.00 -73.28 398.39 2.09 -71.19 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.34 Total: 36.50 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.80 Total: -2.86 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -6.34 Total: -132.00 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.28 2.09 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482696421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.171 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds