Wall clock time and date at job start Sat Apr 11 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46923 * 2 1 4 4 C 1.46500 * 119.99461 * 274.99578 * 3 2 1 5 5 C 1.50699 * 109.47450 * 274.43376 * 4 3 2 6 6 H 1.08004 * 119.99503 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00227 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99887 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47454 * 60.00288 * 9 7 5 11 11 H 1.48502 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47183 * 299.99873 * 9 7 5 13 13 S 1.65596 * 120.00276 * 94.99790 * 3 2 1 14 14 O 1.42095 * 106.40314 * 152.39105 * 13 3 2 15 15 O 1.42100 * 106.40158 * 19.46884 * 13 3 2 16 16 C 1.76200 * 107.21610 * 265.93252 * 13 3 2 17 17 C 1.38267 * 119.98993 * 345.29486 * 16 13 3 18 18 C 1.38222 * 120.05115 * 180.22852 * 17 16 13 19 19 C 1.38221 * 120.02789 * 359.80501 * 18 17 16 20 20 C 1.38434 * 119.97109 * 359.96494 * 19 18 17 21 21 F 1.35102 * 120.02519 * 179.97438 * 20 19 18 22 22 C 1.38183 * 119.98689 * 165.07257 * 16 13 3 23 23 N 1.48002 * 120.00846 * 0.02562 * 22 16 13 24 24 O 1.21804 * 120.00085 * 264.29627 * 23 22 16 25 25 O 1.21800 * 119.99716 * 84.02963 * 23 22 16 26 26 H 1.08997 * 109.47368 * 300.00165 * 1 2 3 27 27 H 1.08999 * 109.46909 * 60.00622 * 1 2 3 28 28 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47368 * 239.99835 * 2 1 3 30 30 H 1.08999 * 109.46909 * 119.99378 * 2 1 3 31 31 H 1.09001 * 109.47086 * 34.43922 * 4 3 2 32 32 H 1.09003 * 109.46852 * 154.43686 * 4 3 2 33 33 H 0.96996 * 119.99914 * 180.02562 * 8 7 5 34 34 H 1.07998 * 119.97198 * 0.02562 * 17 16 13 35 35 H 1.08006 * 119.98507 * 179.76973 * 18 17 16 36 36 H 1.07994 * 120.01697 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.5004 1.7996 -1.8755 6 1 4.1814 1.1288 -1.3726 7 6 3.8596 2.3740 -3.0763 8 7 3.0310 3.1920 -3.6879 9 14 5.5237 1.9915 -3.8339 10 1 5.6279 0.5323 -4.0889 11 1 5.6659 2.7297 -5.1146 12 1 6.6004 2.4090 -2.9003 13 16 2.4121 2.1203 1.4286 14 8 3.3999 3.0935 1.1181 15 8 2.6160 1.0805 2.3754 16 6 0.9888 3.0097 1.9653 17 6 -0.0524 3.2434 1.0861 18 6 -1.1674 3.9450 1.5044 19 6 -1.2445 4.4104 2.8036 20 6 -0.2047 4.1730 3.6861 21 9 -0.2787 4.6279 4.9561 22 6 0.9116 3.4695 3.2661 23 7 2.0245 3.2155 4.2082 24 8 1.9775 2.2606 4.9630 25 8 2.9894 3.9585 4.2254 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.3676 1.8022 -1.9489 32 1 2.0821 3.1798 -1.0771 33 1 3.2836 3.5958 -4.5329 34 1 0.0071 2.8802 0.0707 35 1 -1.9785 4.1301 0.8156 36 1 -2.1156 4.9590 3.1301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168683065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:49 Heat of formation + Delta-G solvation = -75.113941 kcal Electronic energy + Delta-G solvation = -27695.131894 eV Core-core repulsion = 23418.475822 eV Total energy + Delta-G solvation = -4276.656072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.072 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.77944 -42.30853 -39.57390 -36.99954 -36.58868 -36.46688 -35.59003 -32.84142 -32.65704 -31.57426 -30.25685 -26.97573 -26.77229 -24.24451 -23.48476 -22.97563 -21.92748 -19.96191 -19.02521 -18.90966 -18.28379 -17.98486 -16.98563 -16.65541 -16.45388 -16.39472 -16.12967 -15.86822 -15.76694 -14.68118 -14.22077 -14.11557 -13.57255 -13.35971 -13.24723 -13.03642 -12.93426 -12.31535 -12.24756 -11.92312 -11.81115 -11.71715 -11.67482 -11.43170 -11.16334 -11.13091 -11.04818 -10.97037 -10.66380 -10.59613 -10.26152 -10.14666 -9.95469 -9.69786 -8.57507 -8.42693 -6.20691 -4.25055 -0.19088 0.15385 0.35617 0.41863 0.99802 2.50367 2.98910 3.19798 3.28213 3.32082 3.37731 3.72132 3.95544 4.05839 4.34593 4.38826 4.54306 4.74290 4.79636 5.07716 5.12395 5.18476 5.22676 5.41101 5.46329 5.50398 5.72968 5.77525 6.07512 6.12282 6.31769 6.38261 6.88699 7.08105 7.28837 7.40761 7.76870 8.00207 8.76840 9.41508 10.88126 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.004594 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.519676 B = 6093.269391 C = 6401.735142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 N -0.969 5.969 4 C 0.249 3.751 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.654 3.346 14 O -0.907 6.907 15 O -0.948 6.948 16 C -0.606 4.606 17 C -0.024 4.024 18 C -0.070 4.070 19 C -0.101 4.101 20 C 0.133 3.867 21 F -0.118 7.118 22 C 0.023 3.977 23 N -0.009 5.009 24 O -0.087 6.087 25 O -0.128 6.128 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 -0.212 8.613 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.015 4.015 3 N -0.812 5.812 4 C 0.128 3.872 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.735 3.265 14 O -0.896 6.896 15 O -0.938 6.938 16 C -0.685 4.685 17 C -0.043 4.043 18 C -0.088 4.088 19 C -0.120 4.120 20 C 0.112 3.888 21 F -0.096 7.096 22 C -0.059 4.059 23 N 0.524 4.476 24 O -0.317 6.317 25 O -0.346 6.346 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.420 0.137 8.437 15.853 hybrid contribution 0.326 0.317 -0.027 0.456 sum -13.094 0.454 8.411 15.569 Atomic orbital electron populations 1.22325 0.97029 1.02421 1.01788 1.21349 0.93288 0.82235 1.04587 1.57492 1.80694 1.21363 1.21647 1.19297 0.98546 0.91039 0.78350 1.21370 1.01358 1.28673 1.05782 0.91847 1.24907 0.97574 0.94548 0.96712 1.69880 1.36152 1.30133 1.17264 0.86534 0.83973 0.78518 0.78397 1.20021 1.21082 1.19783 1.03814 0.74062 0.74565 0.74060 1.93722 1.51469 1.61413 1.82994 1.93633 1.83675 1.55035 1.61460 1.31679 1.24133 1.14994 0.97682 1.21299 0.90204 0.93227 0.99609 1.21586 0.98369 0.93809 0.95034 1.21467 0.97547 0.99745 0.93225 1.17188 0.93641 0.97052 0.80931 1.91623 1.96254 1.86456 1.35275 1.20342 0.89439 1.05567 0.90546 1.43559 1.01762 1.00812 1.01510 1.94605 1.84691 1.18419 1.34025 1.94671 1.21958 1.43992 1.73938 0.93570 0.91565 0.91366 0.88526 0.89838 0.93676 0.94379 0.92430 0.81290 0.81935 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 10.15 37.16 0.38 -1.69 16 2 C 0.11 1.71 6.38 -4.04 -0.03 1.68 16 3 N -0.97 -18.33 1.97 -115.66 -0.23 -18.56 16 4 C 0.25 5.55 4.18 -5.19 -0.02 5.52 16 5 C -0.53 -13.97 9.38 -34.44 -0.32 -14.30 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -24.45 13.29 55.43 0.74 -23.72 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 S 2.65 53.90 5.05 -107.50 -0.54 53.36 16 14 O -0.91 -22.11 17.15 -57.17 -0.98 -23.09 16 15 O -0.95 -20.11 15.41 -59.70 -0.92 -21.03 16 16 C -0.61 -9.95 5.83 -39.59 -0.23 -10.18 16 17 C -0.02 -0.30 8.92 -39.58 -0.35 -0.65 16 18 C -0.07 -0.59 10.04 -39.59 -0.40 -0.99 16 19 C -0.10 -0.89 10.03 -39.52 -0.40 -1.28 16 20 C 0.13 1.74 7.30 -39.42 -0.29 1.45 16 21 F -0.12 -1.56 17.10 2.25 0.04 -1.52 16 22 C 0.02 0.39 6.11 -79.89 -0.49 -0.10 16 23 N -0.01 -0.17 3.01 33.99 0.10 -0.06 16 24 O -0.09 -1.66 18.77 -31.34 -0.59 -2.24 16 25 O -0.13 -2.58 19.25 -29.46 -0.57 -3.15 16 26 H 0.05 0.50 7.49 -51.93 -0.39 0.11 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 30 H 0.08 1.26 6.88 -51.93 -0.36 0.90 16 31 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.04 0.90 7.74 -51.93 -0.40 0.49 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.17 1.95 6.45 -52.49 -0.34 1.61 16 35 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.41 338.96 -8.67 -42.08 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.56 Total: -4.22 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.24 Total: -18.89 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.61 Total: -42.34 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -3.06 Total: -49.51 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.54 Total: 53.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.41 -8.67 -42.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168683065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.032 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds