Wall clock time and date at job start Sat Apr 11 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31778 * 122.74821 * 2 1 4 4 C 1.29031 * 117.12586 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91565 * 180.02562 * 4 3 2 6 6 S 1.81399 * 109.47010 * 89.97490 * 5 4 3 7 7 C 1.81401 * 101.92054 * 179.97438 * 6 5 4 8 8 O 1.42096 * 108.57984 * 294.48490 * 6 5 4 9 9 O 1.42103 * 108.58202 * 65.51094 * 6 5 4 10 10 S 1.70979 * 110.16539 * 359.72288 * 4 3 2 11 11 C 1.33644 * 122.75035 * 180.02562 * 2 1 3 12 12 C 1.50698 * 126.03714 * 0.02562 * 11 2 1 13 13 C 1.50694 * 109.47166 * 89.99860 * 12 11 2 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99988 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.72721 * 15 13 12 17 17 C 1.50698 * 109.47082 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00453 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00486 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99592 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46875 * 90.00466 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00530 * 21 19 17 24 24 H 1.48498 * 109.46804 * 330.00027 * 21 19 17 25 25 H 1.08999 * 109.46973 * 269.99524 * 1 2 3 26 26 H 1.08996 * 109.47760 * 29.99718 * 1 2 3 27 27 H 1.09004 * 109.47326 * 150.00143 * 1 2 3 28 28 H 1.09004 * 109.46839 * 209.97153 * 5 4 3 29 29 H 1.08992 * 109.47389 * 329.97536 * 5 4 3 30 30 H 1.08998 * 109.47410 * 60.00296 * 7 6 5 31 31 H 1.08999 * 109.47405 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47394 * 299.99880 * 7 6 5 33 33 H 1.08998 * 109.46890 * 329.99850 * 12 11 2 34 34 H 1.09002 * 109.46875 * 209.99653 * 12 11 2 35 35 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 36 36 H 1.09007 * 109.47196 * 299.99538 * 16 15 13 37 37 H 1.09006 * 109.47678 * 59.99732 * 16 15 13 38 38 H 0.96993 * 120.00178 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4834 2.1272 -0.0001 6 16 4.8764 2.5860 1.7104 7 6 6.0458 3.9522 1.4726 8 8 3.7009 3.0972 2.3235 9 8 5.5639 1.5037 2.3230 10 16 3.9333 -0.6731 0.0067 11 6 2.2300 -1.1240 -0.0005 12 6 1.6847 -2.5289 -0.0017 13 6 1.5034 -2.9962 -1.4228 14 8 1.7885 -2.2607 -2.3441 15 7 1.0245 -4.2315 -1.6701 16 6 0.8427 -4.6836 -3.0517 17 6 0.2987 -6.0890 -3.0528 18 1 0.1079 -6.5949 -2.1179 19 6 0.0455 -6.7293 -4.2474 20 7 -0.4288 -7.9559 -4.2484 21 14 0.3762 -5.8544 -5.8645 22 1 1.7696 -6.1276 -6.2991 23 1 -0.5702 -6.3480 -6.8968 24 1 0.1919 -4.3921 -5.6827 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 5.3960 1.8250 -0.5140 29 1 4.0433 2.9819 -0.5135 30 1 5.5601 4.7535 0.9157 31 1 6.3681 4.3279 2.4438 32 1 6.9124 3.5961 0.9155 33 1 0.7234 -2.5459 0.5118 34 1 2.3828 -3.1899 0.5119 35 1 0.7962 -4.8196 -0.9333 36 1 0.1414 -4.0225 -3.5610 37 1 1.8017 -4.6644 -3.5695 38 1 -0.6073 -8.4062 -5.0888 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467581369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:15 Heat of formation + Delta-G solvation = -63.208321 kcal Electronic energy + Delta-G solvation = -23245.163969 eV Core-core repulsion = 19535.237339 eV Total energy + Delta-G solvation = -3709.926630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.070 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24990 -38.90013 -37.38202 -36.41617 -34.50181 -34.01136 -32.43654 -31.28253 -30.17994 -29.40977 -28.04299 -25.53658 -23.30688 -22.14646 -20.20022 -19.40496 -19.03680 -18.21800 -17.40395 -17.21044 -16.64254 -16.38763 -16.09118 -15.55865 -15.15829 -14.76481 -14.60805 -14.11191 -13.92780 -13.78514 -13.69607 -13.55102 -12.97800 -12.95976 -12.78827 -12.68849 -12.45363 -12.37958 -12.37031 -12.25645 -11.83363 -11.58083 -11.27208 -11.15159 -11.06198 -10.80931 -10.01966 -9.83460 -9.59764 -9.50229 -9.21263 -8.82725 -8.65852 -8.24456 -6.25632 -4.28327 -0.65051 0.55581 1.14796 1.56971 2.21288 2.63313 3.06384 3.08704 3.23359 3.30201 3.38093 3.49465 3.65567 3.92545 4.16761 4.26574 4.29368 4.45211 4.58533 4.67754 4.93188 5.00681 5.09637 5.11403 5.31771 5.42133 5.46508 5.59892 5.72699 5.82486 6.21050 6.73878 7.00713 7.12564 7.32601 7.55258 8.05780 8.43100 8.68905 8.82517 9.34057 10.86199 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.002400 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.300291 B =11665.372151 C =11815.531802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 N -0.441 5.441 4 C 0.013 3.987 5 C -0.529 4.529 6 S 2.417 3.583 7 C -0.655 4.655 8 O -0.920 6.920 9 O -0.927 6.927 10 S 0.174 5.826 11 C -0.180 4.180 12 C -0.071 4.071 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.703 5.703 16 C 0.221 3.779 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.398 0.602 36 H 0.026 0.974 37 H 0.021 0.979 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.906 22.189 12.490 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 N -0.157 5.157 4 C -0.263 4.263 5 C -0.659 4.659 6 S 2.596 3.404 7 C -0.805 4.805 8 O -0.917 6.917 9 O -0.924 6.924 10 S 0.430 5.570 11 C -0.302 4.302 12 C -0.114 4.114 13 C 0.284 3.716 14 O -0.426 6.426 15 N -0.352 5.352 16 C 0.099 3.901 17 C -0.583 4.583 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.186 1.186 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.232 0.768 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.509 22.184 12.458 28.352 hybrid contribution -0.465 0.422 -1.514 1.639 sum 12.044 22.606 10.944 27.854 Atomic orbital electron populations 1.20388 0.86629 1.03933 1.02875 1.20062 0.98328 0.85577 1.02177 1.66007 1.03818 1.32152 1.13705 1.25162 0.93830 0.96984 1.10374 1.29021 1.05425 1.04505 1.26903 1.08266 0.76978 0.77576 0.77575 1.30285 1.17697 1.19943 1.12555 1.93635 1.45992 1.80221 1.71866 1.93630 1.74926 1.51859 1.72009 1.83945 1.06442 1.00318 1.66278 1.25250 0.95081 0.99772 1.10119 1.20189 1.03662 0.90407 0.97122 1.20247 0.78618 0.82596 0.90096 1.90684 1.51152 1.54758 1.46027 1.46167 1.63574 1.14158 1.11254 1.19508 0.96489 0.95648 0.78451 1.21077 1.45038 0.96887 0.95262 0.90164 1.24795 0.93985 0.94652 0.99163 1.69871 1.43639 1.11839 1.27453 0.86823 0.78701 0.80910 0.83286 1.19854 1.20854 1.18556 0.90411 0.90358 0.90375 0.83186 0.82252 0.85014 0.84858 0.85044 0.86537 0.87453 0.76815 0.95661 0.96141 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.82 36.00 0.35 -0.61 16 2 C 0.07 1.05 6.74 -84.23 -0.57 0.49 16 3 N -0.44 -6.58 10.53 -8.06 -0.08 -6.67 16 4 C 0.01 0.17 6.65 -13.45 -0.09 0.08 16 5 C -0.53 -3.84 6.39 36.01 0.23 -3.61 16 6 S 2.42 18.29 5.34 -107.50 -0.57 17.72 16 7 C -0.65 -1.72 10.62 101.05 1.07 -0.64 16 8 O -0.92 -10.89 18.10 -57.83 -1.05 -11.94 16 9 O -0.93 -10.00 18.10 -57.83 -1.05 -11.05 16 10 S 0.17 2.29 23.18 -107.50 -2.49 -0.21 16 11 C -0.18 -2.60 5.08 -35.92 -0.18 -2.79 16 12 C -0.07 -0.93 5.63 -29.04 -0.16 -1.09 16 13 C 0.50 9.04 7.82 -10.98 -0.09 8.95 16 14 O -0.55 -12.08 16.03 5.56 0.09 -11.99 16 15 N -0.70 -13.49 5.55 -61.47 -0.34 -13.83 16 16 C 0.22 5.29 4.50 -5.20 -0.02 5.27 16 17 C -0.54 -14.61 9.83 -34.44 -0.34 -14.95 16 18 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 21 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.96 7.35 -51.93 -0.38 0.58 16 28 H 0.15 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.13 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.13 0.07 8.14 -51.92 -0.42 -0.36 16 33 H 0.12 1.19 7.43 -51.93 -0.39 0.81 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.40 6.55 8.32 -40.82 -0.34 6.21 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 37 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -39.75 356.71 -8.74 -48.49 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.83 Total: -0.27 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.35 Total: -45.83 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -2.00 Total: -34.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -3.07 Total: 17.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.75 -8.74 -48.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.718 kcal (2) G-P(sol) polarization free energy of solvation -39.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds