Wall clock time and date at job start Sat Apr 11 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31778 * 122.74821 * 2 1 4 4 C 1.29031 * 117.12586 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91565 * 180.02562 * 4 3 2 6 6 S 1.81399 * 109.47010 * 89.97490 * 5 4 3 7 7 C 1.81401 * 101.92054 * 179.97438 * 6 5 4 8 8 O 1.42096 * 108.57984 * 294.48490 * 6 5 4 9 9 O 1.42103 * 108.58202 * 65.51094 * 6 5 4 10 10 S 1.70979 * 110.16539 * 359.72288 * 4 3 2 11 11 C 1.33644 * 122.75035 * 180.02562 * 2 1 3 12 12 C 1.50698 * 126.03714 * 0.02562 * 11 2 1 13 13 C 1.50694 * 109.47166 * 89.99860 * 12 11 2 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99988 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.72721 * 15 13 12 17 17 C 1.50698 * 109.47082 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00453 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00486 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99592 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46875 * 90.00466 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00530 * 21 19 17 24 24 H 1.48498 * 109.46804 * 330.00027 * 21 19 17 25 25 H 1.08999 * 109.46973 * 269.99524 * 1 2 3 26 26 H 1.08996 * 109.47760 * 29.99718 * 1 2 3 27 27 H 1.09004 * 109.47326 * 150.00143 * 1 2 3 28 28 H 1.09004 * 109.46839 * 209.97153 * 5 4 3 29 29 H 1.08992 * 109.47389 * 329.97536 * 5 4 3 30 30 H 1.08998 * 109.47410 * 60.00296 * 7 6 5 31 31 H 1.08999 * 109.47405 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47394 * 299.99880 * 7 6 5 33 33 H 1.08998 * 109.46890 * 329.99850 * 12 11 2 34 34 H 1.09002 * 109.46875 * 209.99653 * 12 11 2 35 35 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 36 36 H 1.09007 * 109.47196 * 299.99538 * 16 15 13 37 37 H 1.09006 * 109.47678 * 59.99732 * 16 15 13 38 38 H 0.96993 * 120.00178 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4834 2.1272 -0.0001 6 16 4.8764 2.5860 1.7104 7 6 6.0458 3.9522 1.4726 8 8 3.7009 3.0972 2.3235 9 8 5.5639 1.5037 2.3230 10 16 3.9333 -0.6731 0.0067 11 6 2.2300 -1.1240 -0.0005 12 6 1.6847 -2.5289 -0.0017 13 6 1.5034 -2.9962 -1.4228 14 8 1.7885 -2.2607 -2.3441 15 7 1.0245 -4.2315 -1.6701 16 6 0.8427 -4.6836 -3.0517 17 6 0.2987 -6.0890 -3.0528 18 1 0.1079 -6.5949 -2.1179 19 6 0.0455 -6.7293 -4.2474 20 7 -0.4288 -7.9559 -4.2484 21 14 0.3762 -5.8544 -5.8645 22 1 1.7696 -6.1276 -6.2991 23 1 -0.5702 -6.3480 -6.8968 24 1 0.1919 -4.3921 -5.6827 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 5.3960 1.8250 -0.5140 29 1 4.0433 2.9819 -0.5135 30 1 5.5601 4.7535 0.9157 31 1 6.3681 4.3279 2.4438 32 1 6.9124 3.5961 0.9155 33 1 0.7234 -2.5459 0.5118 34 1 2.3828 -3.1899 0.5119 35 1 0.7962 -4.8196 -0.9333 36 1 0.1414 -4.0225 -3.5610 37 1 1.8017 -4.6644 -3.5695 38 1 -0.6073 -8.4062 -5.0888 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467581369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:14 Heat of formation + Delta-G solvation = -96.860630 kcal Electronic energy + Delta-G solvation = -23246.623242 eV Core-core repulsion = 19535.237339 eV Total energy + Delta-G solvation = -3711.385903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32897 -40.33773 -38.06235 -37.09542 -36.22355 -35.04774 -34.41839 -32.26122 -30.76740 -30.08013 -29.79443 -26.74211 -24.28459 -23.93729 -21.72850 -20.23899 -19.92583 -19.18000 -19.13079 -17.89359 -17.71071 -17.41479 -17.10137 -16.90698 -16.39787 -16.18254 -15.69525 -15.64991 -14.83368 -14.71611 -14.52344 -14.37352 -14.24330 -13.96188 -13.91313 -13.66859 -13.57979 -13.51099 -13.15189 -13.08224 -13.07292 -12.93574 -12.71005 -12.23770 -12.16870 -11.95358 -11.78876 -11.66104 -11.01023 -10.92797 -10.83966 -10.32035 -9.96039 -9.65954 -8.40488 -6.47245 -1.21572 -0.40132 0.19046 0.56430 1.31274 1.34054 1.45829 1.57563 1.66106 1.75258 2.26767 2.42463 2.49519 2.94909 2.95190 3.05004 3.53588 3.60728 3.93166 3.96608 4.03010 4.11833 4.28387 4.41360 4.46270 4.50430 4.69868 4.74295 4.79897 4.86022 4.98929 5.01939 5.24245 5.25832 5.48627 6.07570 6.53991 6.54729 6.80433 7.14647 7.36868 8.74095 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.002400 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.300291 B =11665.372151 C =11815.531802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.472 5.472 4 C 0.016 3.984 5 C -0.536 4.536 6 S 2.409 3.591 7 C -0.622 4.622 8 O -0.976 6.976 9 O -0.971 6.971 10 S 0.165 5.835 11 C -0.207 4.207 12 C -0.059 4.059 13 C 0.504 3.496 14 O -0.588 6.588 15 N -0.702 5.702 16 C 0.233 3.767 17 C -0.545 4.545 18 H 0.062 0.938 19 C 0.026 3.974 20 N -0.930 5.930 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.262 1.262 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.188 0.812 29 H 0.186 0.814 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.412 0.588 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 24.505 12.437 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 N -0.189 5.189 4 C -0.261 4.261 5 C -0.665 4.665 6 S 2.594 3.406 7 C -0.776 4.776 8 O -0.973 6.973 9 O -0.968 6.968 10 S 0.422 5.578 11 C -0.329 4.329 12 C -0.101 4.101 13 C 0.290 3.710 14 O -0.469 6.469 15 N -0.352 5.352 16 C 0.109 3.891 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.174 4.174 20 N -0.569 5.569 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.186 1.186 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.206 0.794 29 H 0.203 0.797 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.248 0.752 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.200 24.448 12.453 30.893 hybrid contribution -0.898 -0.170 -1.449 1.713 sum 13.302 24.278 11.004 29.790 Atomic orbital electron populations 1.20449 0.85551 1.03652 1.04132 1.20498 0.99444 0.85917 1.01749 1.66090 1.04817 1.32419 1.15526 1.26067 0.94129 0.98174 1.07731 1.29311 1.05942 1.03724 1.27543 1.08123 0.76965 0.78386 0.77148 1.30031 1.16336 1.16851 1.14393 1.93570 1.49312 1.80993 1.73389 1.93575 1.75218 1.54779 1.73208 1.83856 1.06218 1.01242 1.66435 1.25394 0.95643 1.00171 1.11732 1.20189 1.06074 0.90208 0.93612 1.21020 0.76774 0.81307 0.91880 1.90661 1.52607 1.55675 1.47970 1.45986 1.64172 1.15204 1.09837 1.19085 0.95231 0.93743 0.81031 1.21293 1.44359 0.98033 0.94627 0.91982 1.25584 0.93950 0.95276 1.02591 1.69973 1.45079 1.13286 1.28550 0.85883 0.78980 0.79618 0.79547 1.19075 1.19889 1.18600 0.88341 0.90556 0.90654 0.79404 0.79660 0.82206 0.83656 0.81804 0.83507 0.84700 0.75198 0.96989 0.97183 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.82 71.24 0.70 -1.19 16 2 C 0.06 1.65 6.74 41.52 0.28 1.93 16 3 N -0.47 -13.95 10.53 -179.40 -1.89 -15.84 16 4 C 0.02 0.40 6.65 88.52 0.59 0.98 16 5 C -0.54 -6.55 6.39 71.24 0.45 -6.09 16 6 S 2.41 32.77 5.34 -56.49 -0.30 32.47 16 7 C -0.62 -0.44 10.62 113.37 1.20 0.77 16 8 O -0.98 -23.03 18.10 -127.37 -2.31 -25.33 16 9 O -0.97 -20.44 18.10 -127.37 -2.30 -22.74 16 10 S 0.17 4.26 23.18 -56.49 -1.31 2.95 16 11 C -0.21 -5.87 5.08 24.64 0.13 -5.74 16 12 C -0.06 -1.45 5.63 29.10 0.16 -1.29 16 13 C 0.50 17.82 7.82 87.65 0.69 18.51 16 14 O -0.59 -25.91 16.03 -3.04 -0.05 -25.96 16 15 N -0.70 -26.58 5.55 -466.78 -2.59 -29.17 16 16 C 0.23 11.15 4.50 85.63 0.38 11.54 16 17 C -0.55 -29.50 9.83 25.60 0.25 -29.24 16 18 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 19 C 0.03 1.48 5.47 84.66 0.46 1.94 16 20 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 21 Si 0.94 43.74 27.47 68.60 1.88 45.63 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 25 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.81 7.35 -2.39 -0.02 1.79 16 28 H 0.19 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.19 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.16 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.15 2.69 7.43 -2.39 -0.02 2.67 16 34 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.41 13.23 8.32 -92.71 -0.77 12.45 16 36 H 0.01 0.62 7.20 -2.38 -0.02 0.60 16 37 H 0.01 0.51 7.57 -2.38 -0.02 0.49 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -89.63 356.71 -2.99 -92.62 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.27 Total: 7.98 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.30 Total: -7.89 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -4.18 Total: -99.72 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -4.66 Total: -74.03 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 16 Polarization: 37.03 SS G_CDS: -1.61 Total: 35.42 kcal Total: -89.63 -2.99 -92.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.240 kcal (2) G-P(sol) polarization free energy of solvation -89.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds