Wall clock time and date at job start Sat Apr 11 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35948 * 116.99897 * 2 1 4 4 C 1.38955 * 120.06645 * 90.00252 * 3 2 1 5 5 F 1.35098 * 120.04486 * 359.74252 * 4 3 2 6 6 C 1.38282 * 119.90591 * 179.72506 * 4 3 2 7 7 C 1.38299 * 120.03471 * 0.02562 * 6 4 3 8 8 C 1.38223 * 120.12144 * 0.02562 * 7 6 4 9 9 C 1.38220 * 120.09550 * 359.96048 * 8 7 6 10 10 S 1.76203 * 120.01537 * 180.02562 * 9 8 7 11 11 O 1.42097 * 106.40099 * 228.56008 * 10 9 8 12 12 O 1.42100 * 106.40117 * 1.47505 * 10 9 8 13 13 N 1.65590 * 107.22052 * 115.01579 * 10 9 8 14 14 C 1.46501 * 120.00040 * 65.00008 * 13 10 9 15 15 C 1.50708 * 109.47388 * 164.99769 * 14 13 10 16 16 O 1.21288 * 119.99328 * 0.02562 * 15 14 13 17 17 N 1.34766 * 119.99985 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00186 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00258 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00000 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99729 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47400 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46723 * 120.00315 * 22 20 18 25 25 H 1.48500 * 109.47026 * 239.99793 * 22 20 18 26 26 H 1.09002 * 109.47467 * 300.00113 * 1 2 3 27 27 H 1.08998 * 109.47314 * 59.99910 * 1 2 3 28 28 H 1.09001 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.98602 * 180.02562 * 6 4 3 30 30 H 1.07994 * 119.94334 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.95091 * 179.97438 * 8 7 6 32 32 H 0.96998 * 120.00600 * 245.00004 * 13 10 9 33 33 H 1.08997 * 109.47537 * 285.00293 * 14 13 10 34 34 H 1.09005 * 109.46845 * 45.00117 * 14 13 10 35 35 H 0.97007 * 120.00241 * 359.97438 * 17 15 14 36 36 H 0.96999 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.3622 1.8316 1.2026 5 9 2.0520 1.2341 2.3739 6 6 2.9951 3.0611 1.1987 7 6 3.3124 3.6725 -0.0005 8 6 2.9977 3.0571 -1.1975 9 6 2.3653 1.8281 -1.1997 10 16 1.9656 1.0452 -2.7268 11 8 0.6075 0.6395 -2.6263 12 8 2.4472 1.9005 -3.7543 13 7 2.8632 -0.3435 -2.8155 14 6 2.6313 -1.4279 -1.8582 15 6 3.2867 -2.6892 -2.3593 16 8 3.8886 -2.6826 -3.4122 17 7 3.2039 -3.8242 -1.6374 18 6 3.8005 -4.9714 -2.0930 19 1 4.3365 -4.9657 -3.0306 20 6 3.7155 -6.1416 -1.3485 21 7 3.0629 -6.1487 -0.2079 22 14 4.5279 -7.7048 -1.9697 23 1 5.1939 -7.4340 -3.2689 24 1 5.5378 -8.1638 -0.9824 25 1 3.4981 -8.7593 -2.1510 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.2418 3.5442 2.1327 30 1 3.8063 4.6329 -0.0018 31 1 3.2463 3.5373 -2.1324 32 1 3.5425 -0.4390 -3.5012 33 1 3.0565 -1.1568 -0.8919 34 1 1.5595 -1.5938 -1.7498 35 1 2.7227 -3.8293 -0.7951 36 1 3.0034 -6.9657 0.3116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663226455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:29 Heat of formation + Delta-G solvation = -154.339913 kcal Electronic energy + Delta-G solvation = -26956.261480 eV Core-core repulsion = 22676.169912 eV Total energy + Delta-G solvation = -4280.091568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.16930 -40.16391 -38.40769 -37.92889 -36.98502 -35.88866 -34.61482 -33.65714 -31.48554 -31.30526 -30.53053 -27.10782 -27.06620 -24.29529 -23.96575 -22.91302 -19.70791 -19.60609 -18.81907 -18.15035 -17.86835 -17.54121 -17.12675 -16.46230 -16.13362 -15.86365 -15.53032 -15.36026 -15.08382 -14.75853 -14.69406 -14.45562 -14.20805 -13.58148 -13.54401 -12.86055 -12.76462 -12.73721 -12.43609 -12.26118 -12.07543 -12.00136 -11.88527 -11.81710 -11.51885 -11.12454 -10.95927 -10.37240 -10.27260 -10.26325 -9.80989 -9.60284 -9.33395 -9.05433 -8.52234 -8.04455 -6.46882 -3.88338 0.12154 0.44996 0.60179 2.70578 3.02981 3.13509 3.25279 3.28843 3.32629 3.61608 3.80292 3.81945 4.13553 4.21098 4.44611 4.55186 4.77057 4.91611 4.97382 5.19724 5.21766 5.27763 5.40154 5.49364 5.57851 5.58053 5.71728 5.85388 5.95511 6.00893 6.16201 6.33587 6.99622 7.26747 7.50939 7.99017 8.51864 9.10427 9.45619 9.94499 10.70241 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.003774 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.581264 B = 7418.355998 C = 8321.374967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.166 3.834 4 C 0.063 3.937 5 F -0.125 7.125 6 C -0.091 4.091 7 C -0.119 4.119 8 C -0.018 4.018 9 C -0.676 4.676 10 S 2.707 3.293 11 O -0.950 6.950 12 O -0.959 6.959 13 N -1.090 6.090 14 C 0.115 3.885 15 C 0.435 3.565 16 O -0.592 6.592 17 N -0.553 5.553 18 C -0.303 4.303 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.931 3.069 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.428 0.572 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.396 0.604 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 19.297 4.998 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.119 3.881 4 C 0.043 3.957 5 F -0.104 7.104 6 C -0.110 4.110 7 C -0.138 4.138 8 C -0.038 4.038 9 C -0.760 4.760 10 S 2.793 3.207 11 O -0.940 6.940 12 O -0.949 6.949 13 N -0.855 5.855 14 C -0.015 4.015 15 C 0.219 3.781 16 O -0.478 6.478 17 N -0.188 5.188 18 C -0.432 4.432 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.758 3.242 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.267 0.733 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.868 19.237 4.029 20.031 hybrid contribution 0.622 -0.783 1.219 1.577 sum -3.245 18.454 5.248 19.458 Atomic orbital electron populations 1.23599 0.75966 1.05512 1.02642 1.86176 1.22226 1.22275 1.94186 1.18104 0.94078 0.85641 0.90260 1.18060 1.03214 0.93266 0.81170 1.91547 1.90998 1.83153 1.44685 1.21431 0.95976 0.93045 1.00544 1.21199 1.00515 1.00953 0.91141 1.20996 0.91345 0.91283 1.00140 1.31461 1.16255 1.08301 1.19997 1.01538 0.74000 0.72359 0.72779 1.93527 1.32532 1.81827 1.86121 1.93577 1.81595 1.65989 1.53746 1.54956 1.56828 1.29776 1.43972 1.21033 1.01983 0.87197 0.91294 1.19725 0.86552 0.84853 0.86962 1.90498 1.47817 1.84911 1.24557 1.41816 1.47570 1.07978 1.21467 1.19785 1.30459 0.86087 1.06902 0.87672 1.25297 0.97295 0.99628 0.95526 1.69624 1.41428 1.29396 1.13210 0.85778 0.78730 0.80752 0.78939 1.19163 1.20708 1.20662 0.93602 0.89096 0.87397 0.83504 0.83643 0.82714 0.73258 0.89677 0.88587 0.77050 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.37 101.05 1.05 1.23 16 2 O -0.33 -4.55 5.76 -29.15 -0.17 -4.72 16 3 C 0.17 2.14 5.37 -39.18 -0.21 1.93 16 4 C 0.06 0.74 7.31 -39.30 -0.29 0.45 16 5 F -0.13 -1.59 17.11 2.25 0.04 -1.55 16 6 C -0.09 -0.78 10.02 -39.54 -0.40 -1.18 16 7 C -0.12 -0.92 10.04 -39.56 -0.40 -1.32 16 8 C -0.02 -0.18 9.54 -39.59 -0.38 -0.56 16 9 C -0.68 -8.30 5.90 -39.45 -0.23 -8.53 16 10 S 2.71 38.40 5.46 -107.50 -0.59 37.81 16 11 O -0.95 -14.71 13.84 -62.45 -0.86 -15.57 16 12 O -0.96 -14.79 16.97 -57.17 -0.97 -15.77 16 13 N -1.09 -17.58 5.93 -11.65 -0.07 -17.65 16 14 C 0.11 2.04 4.98 -5.19 -0.03 2.01 16 15 C 0.43 10.08 7.85 -10.99 -0.09 10.00 16 16 O -0.59 -15.50 15.30 5.55 0.08 -15.41 16 17 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 22 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.11 5.48 -51.93 -0.28 0.83 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.16 1.27 7.33 -52.49 -0.38 0.89 16 32 H 0.43 7.11 7.70 -34.47 -0.27 6.85 16 33 H 0.09 1.39 6.63 -51.93 -0.34 1.05 16 34 H 0.10 1.59 7.01 -51.93 -0.36 1.22 16 35 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -33.37 326.09 -6.35 -39.72 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -3.17 Total: 13.43 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.21 Total: -3.82 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.60 Total: -54.70 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -1.92 Total: -51.47 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 38.40 SS G_CDS: -0.59 Total: 37.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.37 -6.35 -39.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.618 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds