Wall clock time and date at job start Sat Apr 11 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35948 * 116.99897 * 2 1 4 4 C 1.38955 * 120.06645 * 90.00252 * 3 2 1 5 5 F 1.35098 * 120.04486 * 359.74252 * 4 3 2 6 6 C 1.38282 * 119.90591 * 179.72506 * 4 3 2 7 7 C 1.38299 * 120.03471 * 0.02562 * 6 4 3 8 8 C 1.38223 * 120.12144 * 0.02562 * 7 6 4 9 9 C 1.38220 * 120.09550 * 359.96048 * 8 7 6 10 10 S 1.76203 * 120.01537 * 180.02562 * 9 8 7 11 11 O 1.42097 * 106.40099 * 228.56008 * 10 9 8 12 12 O 1.42100 * 106.40117 * 1.47505 * 10 9 8 13 13 N 1.65590 * 107.22052 * 115.01579 * 10 9 8 14 14 C 1.46501 * 120.00040 * 65.00008 * 13 10 9 15 15 C 1.50708 * 109.47388 * 164.99769 * 14 13 10 16 16 O 1.21288 * 119.99328 * 0.02562 * 15 14 13 17 17 N 1.34766 * 119.99985 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00186 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00258 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00000 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99729 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47400 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46723 * 120.00315 * 22 20 18 25 25 H 1.48500 * 109.47026 * 239.99793 * 22 20 18 26 26 H 1.09002 * 109.47467 * 300.00113 * 1 2 3 27 27 H 1.08998 * 109.47314 * 59.99910 * 1 2 3 28 28 H 1.09001 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.98602 * 180.02562 * 6 4 3 30 30 H 1.07994 * 119.94334 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.95091 * 179.97438 * 8 7 6 32 32 H 0.96998 * 120.00600 * 245.00004 * 13 10 9 33 33 H 1.08997 * 109.47537 * 285.00293 * 14 13 10 34 34 H 1.09005 * 109.46845 * 45.00117 * 14 13 10 35 35 H 0.97007 * 120.00241 * 359.97438 * 17 15 14 36 36 H 0.96999 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.3622 1.8316 1.2026 5 9 2.0520 1.2341 2.3739 6 6 2.9951 3.0611 1.1987 7 6 3.3124 3.6725 -0.0005 8 6 2.9977 3.0571 -1.1975 9 6 2.3653 1.8281 -1.1997 10 16 1.9656 1.0452 -2.7268 11 8 0.6075 0.6395 -2.6263 12 8 2.4472 1.9005 -3.7543 13 7 2.8632 -0.3435 -2.8155 14 6 2.6313 -1.4279 -1.8582 15 6 3.2867 -2.6892 -2.3593 16 8 3.8886 -2.6826 -3.4122 17 7 3.2039 -3.8242 -1.6374 18 6 3.8005 -4.9714 -2.0930 19 1 4.3365 -4.9657 -3.0306 20 6 3.7155 -6.1416 -1.3485 21 7 3.0629 -6.1487 -0.2079 22 14 4.5279 -7.7048 -1.9697 23 1 5.1939 -7.4340 -3.2689 24 1 5.5378 -8.1638 -0.9824 25 1 3.4981 -8.7593 -2.1510 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.2418 3.5442 2.1327 30 1 3.8063 4.6329 -0.0018 31 1 3.2463 3.5373 -2.1324 32 1 3.5425 -0.4390 -3.5012 33 1 3.0565 -1.1568 -0.8919 34 1 1.5595 -1.5938 -1.7498 35 1 2.7227 -3.8293 -0.7951 36 1 3.0034 -6.9657 0.3116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663226455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:29 Heat of formation + Delta-G solvation = -180.575116 kcal Electronic energy + Delta-G solvation = -26957.399124 eV Core-core repulsion = 22676.169912 eV Total energy + Delta-G solvation = -4281.229212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.072 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04596 -41.03553 -40.24260 -38.89259 -38.07440 -37.07747 -36.32970 -35.37429 -33.31821 -32.28083 -31.32522 -28.76773 -27.96099 -26.16843 -24.79813 -23.71511 -21.42305 -20.76826 -20.05605 -19.82908 -19.11680 -18.44869 -18.13921 -17.57683 -17.26618 -17.10983 -16.96210 -16.48275 -16.16787 -16.04569 -16.00256 -15.86528 -15.59977 -15.25107 -14.41891 -14.12322 -13.84996 -13.71181 -13.60192 -13.58145 -13.52949 -13.26952 -13.15289 -13.05489 -12.91407 -12.73078 -12.41341 -12.10405 -11.90498 -11.55422 -11.22490 -10.70016 -10.58238 -10.39899 -10.05579 -9.86021 -8.48279 -5.97901 -0.84726 -0.51391 -0.18076 1.36531 1.43596 1.57531 1.76700 1.95339 2.04971 2.29937 2.43245 2.54915 2.90340 3.14787 3.18800 3.37215 3.71444 3.75778 4.02011 4.05880 4.19459 4.34140 4.43321 4.49043 4.55633 4.59429 4.71992 4.72659 4.92566 4.97629 5.02740 5.40917 5.45706 5.88111 5.99676 6.10098 6.53210 7.07708 7.48638 8.00933 8.68888 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.003774 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.581264 B = 7418.355998 C = 8321.374967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.350 6.350 3 C 0.143 3.857 4 C 0.043 3.957 5 F -0.136 7.136 6 C -0.076 4.076 7 C -0.103 4.103 8 C -0.022 4.022 9 C -0.685 4.685 10 S 2.721 3.279 11 O -0.968 6.968 12 O -0.972 6.972 13 N -1.099 6.099 14 C 0.131 3.869 15 C 0.433 3.567 16 O -0.625 6.625 17 N -0.562 5.562 18 C -0.337 4.337 19 H 0.083 0.917 20 C -0.009 4.009 21 N -0.915 5.915 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.181 0.819 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.425 0.575 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.399 0.601 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 20.956 6.174 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.267 6.267 3 C 0.096 3.904 4 C 0.022 3.978 5 F -0.115 7.115 6 C -0.095 4.095 7 C -0.121 4.121 8 C -0.041 4.041 9 C -0.773 4.773 10 S 2.811 3.189 11 O -0.958 6.958 12 O -0.963 6.963 13 N -0.861 5.861 14 C 0.001 3.999 15 C 0.219 3.781 16 O -0.512 6.512 17 N -0.198 5.198 18 C -0.466 4.466 19 H 0.101 0.899 20 C -0.210 4.210 21 N -0.556 5.556 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.199 0.801 30 H 0.208 0.792 31 H 0.188 0.812 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.234 0.766 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.307 20.889 5.191 21.777 hybrid contribution 0.444 -1.135 0.896 1.513 sum -2.864 19.754 6.087 20.868 Atomic orbital electron populations 1.23685 0.75531 1.06041 1.02944 1.86115 1.22922 1.23346 1.94359 1.18303 0.95095 0.85871 0.91085 1.18349 1.04522 0.94525 0.80384 1.91516 1.91303 1.83597 1.45069 1.21897 0.93673 0.91443 1.02483 1.21699 0.98815 1.02009 0.89623 1.21384 0.90409 0.90308 1.02007 1.31023 1.18566 1.09571 1.18133 1.00885 0.73185 0.71635 0.73161 1.93505 1.33499 1.82056 1.86713 1.93554 1.81734 1.65888 1.55102 1.55037 1.56913 1.30319 1.43856 1.20875 1.02103 0.84941 0.91963 1.20612 0.85474 0.85905 0.86134 1.90467 1.49050 1.85761 1.25966 1.41868 1.47941 1.08134 1.21861 1.19762 1.32111 0.87792 1.06976 0.89862 1.26075 0.97377 1.02030 0.95498 1.69683 1.41659 1.30479 1.13736 0.84845 0.78057 0.77012 0.78248 1.19665 1.19580 1.19604 0.92201 0.89883 0.86822 0.80131 0.79209 0.81223 0.73709 0.87985 0.87330 0.76619 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 10.37 113.37 1.18 1.43 16 2 O -0.35 -9.55 5.76 -83.81 -0.48 -10.03 16 3 C 0.14 3.56 5.37 22.53 0.12 3.68 16 4 C 0.04 0.92 7.31 22.45 0.16 1.08 16 5 F -0.14 -3.29 17.11 44.97 0.77 -2.52 16 6 C -0.08 -1.02 10.02 22.29 0.22 -0.80 16 7 C -0.10 -1.13 10.04 22.28 0.22 -0.91 16 8 C -0.02 -0.36 9.54 22.26 0.21 -0.15 16 9 C -0.68 -15.97 5.90 22.36 0.13 -15.83 16 10 S 2.72 76.72 5.46 -56.49 -0.31 76.41 16 11 O -0.97 -30.19 13.84 -122.96 -1.70 -31.89 16 12 O -0.97 -29.56 16.97 -128.00 -2.17 -31.73 16 13 N -1.10 -35.85 5.93 -190.77 -1.13 -36.98 16 14 C 0.13 4.71 4.98 85.64 0.43 5.14 16 15 C 0.43 20.58 7.85 87.66 0.69 21.27 16 16 O -0.62 -33.73 15.30 -3.05 -0.05 -33.77 16 17 N -0.56 -28.74 5.29 -306.99 -1.62 -30.36 16 18 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 22 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 2.06 5.48 -2.39 -0.01 2.05 16 28 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.19 0.44 8.06 -2.91 -0.02 0.41 16 31 H 0.17 2.30 7.33 -2.91 -0.02 2.28 16 32 H 0.42 14.47 7.70 -96.75 -0.75 13.73 16 33 H 0.10 3.35 6.63 -2.39 -0.02 3.34 16 34 H 0.11 3.64 7.01 -2.38 -0.02 3.62 16 35 H 0.40 19.45 7.90 -92.70 -0.73 18.72 16 36 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.95 326.09 -0.04 -72.99 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.30 Total: 35.26 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.65 Total: -3.21 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -2.47 Total: -115.88 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -4.40 Total: -107.42 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.77 Total: -2.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 76.72 SS G_CDS: -0.31 Total: 76.41 kcal Total: -72.95 -0.04 -72.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.583 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds