Wall clock time and date at job start Sat Apr 11 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46784 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.47160 * 60.00114 * 3 2 1 7 7 C 1.38956 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99844 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00612 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99911 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46828 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99432 * 179.97438 * 13 12 10 15 15 O 1.21551 * 120.00620 * 0.02562 * 14 13 12 16 16 C 1.47860 * 119.99788 * 179.97438 * 14 13 12 17 17 C 1.39609 * 120.11834 * 359.97438 * 16 14 13 18 18 C 1.37957 * 119.96603 * 180.02562 * 17 16 14 19 19 C 1.38293 * 120.20881 * 359.73201 * 18 17 16 20 20 C 1.38808 * 120.23347 * 0.54157 * 19 18 17 21 21 O 1.35915 * 119.98532 * 179.72585 * 20 19 18 22 22 C 1.42901 * 116.99609 * 359.72996 * 21 20 19 23 23 F 1.39904 * 109.47113 * 60.00002 * 22 21 20 24 24 F 1.39901 * 109.46966 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46987 * 299.99859 * 22 21 20 26 26 C 1.38500 * 120.03408 * 359.45748 * 20 19 18 27 27 H 0.97001 * 120.00169 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00177 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47156 * 59.99743 * 12 10 9 30 30 H 1.09004 * 109.46384 * 299.99915 * 12 10 9 31 31 H 0.96994 * 120.00407 * 0.02562 * 13 12 10 32 32 H 1.07996 * 120.01561 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.89753 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.88398 * 180.29365 * 19 18 17 35 35 H 1.08001 * 120.10300 * 180.24889 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1957 -5.9765 0.0014 14 6 1.7464 -7.2472 0.0023 15 8 0.5513 -7.4693 0.0032 16 6 2.7072 -8.3710 0.0010 17 6 4.0803 -8.1188 -0.0017 18 6 4.9740 -9.1698 -0.0034 19 6 4.5143 -10.4740 0.0030 20 6 3.1509 -10.7346 0.0000 21 8 2.7046 -12.0184 0.0008 22 6 3.6944 -13.0492 -0.0012 23 9 4.4953 -12.9288 1.1395 24 9 3.0660 -14.2991 -0.0007 25 9 4.4908 -12.9287 -1.1451 26 6 2.2449 -9.6870 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 0.3533 -2.3907 0.0016 29 1 0.6166 -4.9209 -0.8875 30 1 0.6174 -4.9204 0.8925 31 1 3.1493 -5.7993 0.0011 32 1 4.4427 -7.1014 -0.0032 33 1 6.0360 -8.9734 -0.0051 34 1 5.2185 -11.2928 0.0064 35 1 1.1838 -9.8885 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:42 Heat of formation + Delta-G solvation = -238.596893 kcal Electronic energy + Delta-G solvation = -26942.015388 eV Core-core repulsion = 22104.429777 eV Total energy + Delta-G solvation = -4837.585612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.86312 -48.57800 -48.45697 -40.82805 -39.67379 -38.31569 -37.50275 -34.61614 -33.81961 -31.70392 -31.42703 -30.86232 -27.79933 -26.47475 -24.89233 -23.65140 -23.05121 -21.18045 -19.87802 -19.60864 -19.57600 -19.29110 -18.25277 -17.78426 -16.80685 -16.22962 -16.00299 -15.70535 -15.51325 -15.37863 -15.23383 -14.97529 -14.90881 -14.85023 -14.66721 -14.56283 -14.51712 -14.22820 -14.00220 -13.94683 -13.58107 -13.42455 -12.46816 -12.38256 -12.19114 -11.96725 -11.68955 -11.65387 -11.18181 -10.44694 -10.37330 -10.03289 -9.69961 -9.49118 -9.05877 -8.90911 -8.70872 -8.15757 -6.56401 -3.98571 0.40560 0.85530 1.04692 2.38067 2.63250 3.06791 3.13974 3.20477 3.27185 3.35343 3.45056 3.61595 3.68292 4.06505 4.19652 4.31287 4.58331 4.69806 4.79644 4.84568 5.00310 5.12120 5.43482 5.57323 5.77097 5.85045 5.87287 5.92007 5.93659 5.99252 6.43463 6.51803 7.41662 7.61778 7.86389 8.22907 8.39189 8.99399 9.33371 9.80589 10.60377 Molecular weight = 332.08amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.001908 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.138636 B =14675.260717 C =15187.589034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.698 5.698 14 C 0.556 3.444 15 O -0.538 6.538 16 C -0.090 4.090 17 C -0.099 4.099 18 C -0.084 4.084 19 C -0.170 4.170 20 C 0.093 3.907 21 O -0.308 6.308 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.131 7.131 25 F -0.165 7.165 26 C -0.066 4.066 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.486 -23.549 -0.002 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.352 5.352 14 C 0.341 3.659 15 O -0.417 6.417 16 C -0.093 4.093 17 C -0.118 4.118 18 C -0.101 4.101 19 C -0.188 4.188 20 C 0.051 3.949 21 O -0.228 6.228 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.113 7.113 25 F -0.147 7.147 26 C -0.085 4.085 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.130 -23.567 -0.001 24.622 hybrid contribution 0.466 0.652 0.001 0.802 sum 7.596 -22.915 0.000 24.141 Atomic orbital electron populations 1.69617 1.06034 1.28521 1.49130 1.25346 0.95682 1.00007 0.96705 0.85747 0.79675 0.80745 0.77863 1.19109 1.20581 1.20587 1.19781 0.93503 0.81927 1.48266 0.87561 1.41798 1.09533 1.04482 1.62341 1.19692 0.88278 0.84945 0.85858 1.90492 1.13673 1.86793 1.57581 1.21024 0.91763 0.85532 1.03627 1.45600 1.11890 1.04410 1.73264 1.17992 0.87896 0.82620 0.77344 1.90786 1.15894 1.84794 1.50228 1.19762 0.93695 0.92832 1.03052 1.21564 0.91891 1.00577 0.97734 1.20933 1.00625 0.90854 0.97738 1.21713 0.93269 0.99652 1.04197 1.18468 0.93182 0.80564 1.02676 1.86439 1.33109 1.13910 1.89308 1.19344 0.75736 0.78851 0.74731 1.93308 1.74129 1.95655 1.51603 1.93315 1.82961 1.38676 1.96298 1.93309 1.74384 1.95660 1.51348 1.20421 1.00513 0.88523 0.99038 0.91569 0.76981 0.89455 0.89452 0.74908 0.84032 0.84046 0.84583 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 13.05 55.50 0.72 -22.67 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.15 5.29 -10.96 -0.06 -13.21 16 10 C 0.43 9.39 7.85 -10.98 -0.09 9.30 16 11 O -0.60 -14.65 15.24 5.55 0.08 -14.57 16 12 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 13 N -0.70 -10.99 5.48 -62.42 -0.34 -11.33 16 14 C 0.56 8.49 7.77 -12.32 -0.10 8.39 16 15 O -0.54 -9.69 16.35 5.32 0.09 -9.61 16 16 C -0.09 -1.11 5.87 -104.98 -0.62 -1.73 16 17 C -0.10 -1.00 9.54 -39.17 -0.37 -1.37 16 18 C -0.08 -0.70 10.03 -39.66 -0.40 -1.10 16 19 C -0.17 -1.52 8.25 -39.35 -0.32 -1.84 16 20 C 0.09 0.97 6.48 -39.27 -0.25 0.72 16 21 O -0.31 -3.07 10.37 -19.47 -0.20 -3.27 16 22 C 0.60 5.00 3.42 101.05 0.35 5.35 16 23 F -0.16 -1.32 15.54 2.25 0.03 -1.29 16 24 F -0.13 -1.06 17.53 2.25 0.04 -1.02 16 25 F -0.16 -1.33 15.57 2.25 0.04 -1.29 16 26 C -0.07 -0.77 9.53 -39.02 -0.37 -1.14 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.40 9.16 7.90 -40.82 -0.32 8.84 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.41 6.20 5.47 -40.82 -0.22 5.97 16 32 H 0.14 1.31 6.40 -52.49 -0.34 0.97 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.14 1.01 5.07 -52.49 -0.27 0.75 16 35 H 0.15 1.79 7.65 -52.49 -0.40 1.39 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -30.09 327.67 -4.46 -34.55 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -2.33 Total: 12.92 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -2.45 Total: 10.76 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.32 Total: -47.21 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.03 Total: -27.45 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.11 Total: -3.60 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.09 -4.46 -34.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.050 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds