Wall clock time and date at job start Sat Apr 11 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46784 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.47160 * 60.00114 * 3 2 1 7 7 C 1.38956 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99844 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00612 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99911 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46828 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99432 * 179.97438 * 13 12 10 15 15 O 1.21551 * 120.00620 * 0.02562 * 14 13 12 16 16 C 1.47860 * 119.99788 * 179.97438 * 14 13 12 17 17 C 1.39609 * 120.11834 * 359.97438 * 16 14 13 18 18 C 1.37957 * 119.96603 * 180.02562 * 17 16 14 19 19 C 1.38293 * 120.20881 * 359.73201 * 18 17 16 20 20 C 1.38808 * 120.23347 * 0.54157 * 19 18 17 21 21 O 1.35915 * 119.98532 * 179.72585 * 20 19 18 22 22 C 1.42901 * 116.99609 * 359.72996 * 21 20 19 23 23 F 1.39904 * 109.47113 * 60.00002 * 22 21 20 24 24 F 1.39901 * 109.46966 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46987 * 299.99859 * 22 21 20 26 26 C 1.38500 * 120.03408 * 359.45748 * 20 19 18 27 27 H 0.97001 * 120.00169 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00177 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47156 * 59.99743 * 12 10 9 30 30 H 1.09004 * 109.46384 * 299.99915 * 12 10 9 31 31 H 0.96994 * 120.00407 * 0.02562 * 13 12 10 32 32 H 1.07996 * 120.01561 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.89753 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.88398 * 180.29365 * 19 18 17 35 35 H 1.08001 * 120.10300 * 180.24889 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1957 -5.9765 0.0014 14 6 1.7464 -7.2472 0.0023 15 8 0.5513 -7.4693 0.0032 16 6 2.7072 -8.3710 0.0010 17 6 4.0803 -8.1188 -0.0017 18 6 4.9740 -9.1698 -0.0034 19 6 4.5143 -10.4740 0.0030 20 6 3.1509 -10.7346 0.0000 21 8 2.7046 -12.0184 0.0008 22 6 3.6944 -13.0492 -0.0012 23 9 4.4953 -12.9288 1.1395 24 9 3.0660 -14.2991 -0.0007 25 9 4.4908 -12.9287 -1.1451 26 6 2.2449 -9.6870 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 0.3533 -2.3907 0.0016 29 1 0.6166 -4.9209 -0.8875 30 1 0.6174 -4.9204 0.8925 31 1 3.1493 -5.7993 0.0011 32 1 4.4427 -7.1014 -0.0032 33 1 6.0360 -8.9734 -0.0051 34 1 5.2185 -11.2928 0.0064 35 1 1.1838 -9.8885 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344121591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:41 Heat of formation + Delta-G solvation = -259.551596 kcal Electronic energy + Delta-G solvation = -26942.924052 eV Core-core repulsion = 22104.429777 eV Total energy + Delta-G solvation = -4838.494276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.51413 -49.22587 -49.10170 -41.73799 -40.84929 -39.94568 -38.43612 -36.29304 -35.42887 -33.38837 -32.53241 -31.72674 -29.26527 -27.18202 -26.60426 -24.72955 -23.84073 -22.14940 -21.41978 -20.70326 -20.23281 -20.13850 -19.99312 -18.90083 -17.78011 -17.40709 -17.16079 -16.86472 -16.82906 -16.34872 -16.29055 -16.03098 -15.85548 -15.68476 -15.66648 -15.52503 -15.42634 -15.30268 -15.19423 -14.95076 -14.80601 -14.32712 -13.98689 -13.72121 -13.54757 -13.14018 -13.01711 -12.90775 -12.47747 -12.43713 -12.10358 -11.57526 -11.27951 -10.56593 -10.42943 -10.18231 -10.08305 -9.80998 -8.50831 -6.00777 -0.46271 0.07223 0.34436 1.35692 1.44060 1.57572 1.61419 1.66268 1.90605 1.94559 2.31027 2.56519 2.68080 2.92134 3.09576 3.16676 3.42367 3.48614 3.79778 3.87606 3.97766 4.17314 4.23947 4.41724 4.42378 4.64953 4.85740 5.06746 5.09167 5.14000 5.17346 5.39381 5.68670 5.91968 6.37654 6.48570 6.99603 7.04127 7.44331 7.93903 8.66189 Molecular weight = 332.08amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.001908 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.138636 B =14675.260717 C =15187.589034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.119 3.881 13 N -0.697 5.697 14 C 0.559 3.441 15 O -0.571 6.571 16 C -0.106 4.106 17 C -0.097 4.097 18 C -0.073 4.073 19 C -0.162 4.162 20 C 0.088 3.912 21 O -0.318 6.318 22 C 0.609 3.391 23 F -0.161 7.161 24 F -0.130 7.130 25 F -0.161 7.161 26 C -0.076 4.076 27 H 0.279 0.721 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.155 0.845 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -24.185 -0.003 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.008 4.008 13 N -0.351 5.351 14 C 0.347 3.653 15 O -0.452 6.452 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.090 4.090 19 C -0.180 4.180 20 C 0.046 3.954 21 O -0.238 6.238 22 C 0.519 3.481 23 F -0.143 7.143 24 F -0.111 7.111 25 F -0.143 7.143 26 C -0.096 4.096 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.256 0.744 32 H 0.168 0.832 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.682 -24.226 -0.003 25.735 hybrid contribution 0.033 0.713 0.002 0.714 sum 8.715 -23.513 -0.001 25.076 Atomic orbital electron populations 1.69681 1.07017 1.29565 1.49354 1.26137 0.96536 1.02730 0.95855 0.84809 0.78201 0.76746 0.78218 1.19296 1.19754 1.19765 1.19775 0.93001 0.83451 1.50186 0.89401 1.41850 1.09644 1.04631 1.63338 1.20360 0.88130 0.85825 0.83639 1.90469 1.15024 1.87499 1.58035 1.20855 0.91613 0.83649 1.04707 1.45567 1.11752 1.04230 1.73594 1.18395 0.87996 0.82845 0.76075 1.90763 1.17443 1.85192 1.51761 1.19517 0.94043 0.91815 1.05587 1.21709 0.91046 1.01666 0.97129 1.21302 1.02027 0.89893 0.95813 1.22004 0.92788 1.00610 1.02641 1.18489 0.93646 0.80475 1.02804 1.86416 1.34030 1.14046 1.89346 1.19227 0.75532 0.78510 0.74850 1.93316 1.73933 1.95622 1.51449 1.93323 1.82987 1.38482 1.96300 1.93316 1.74190 1.95627 1.51197 1.20347 1.00452 0.88882 0.99885 0.91100 0.76675 0.88349 0.88346 0.74413 0.83231 0.80597 0.82744 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.90 13.05 21.66 0.28 -47.61 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 40.94 29.55 68.60 2.03 42.97 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.33 -17.97 9.68 84.04 0.81 -17.16 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.23 5.29 -306.97 -1.62 -28.86 16 10 C 0.43 19.15 7.85 87.66 0.69 19.83 16 11 O -0.62 -30.57 15.24 -3.07 -0.05 -30.62 16 12 C 0.12 4.14 6.15 85.64 0.53 4.67 16 13 N -0.70 -21.64 5.48 -469.67 -2.57 -24.22 16 14 C 0.56 17.00 7.77 86.79 0.67 17.67 16 15 O -0.57 -20.77 16.35 -3.88 -0.06 -20.83 16 16 C -0.11 -2.56 5.87 -20.10 -0.12 -2.67 16 17 C -0.10 -1.77 9.54 22.53 0.21 -1.56 16 18 C -0.07 -0.99 10.03 22.22 0.22 -0.77 16 19 C -0.16 -2.46 8.25 22.42 0.19 -2.28 16 20 C 0.09 1.72 6.48 22.47 0.15 1.86 16 21 O -0.32 -5.99 10.37 -92.59 -0.96 -6.95 16 22 C 0.61 9.04 3.42 113.37 0.39 9.43 16 23 F -0.16 -2.25 15.54 44.97 0.70 -1.55 16 24 F -0.13 -1.91 17.53 44.97 0.79 -1.12 16 25 F -0.16 -2.25 15.57 44.97 0.70 -1.55 16 26 C -0.08 -1.76 9.53 22.63 0.22 -1.54 16 27 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 31 H 0.42 12.24 5.47 -92.71 -0.51 11.74 16 32 H 0.15 2.48 6.40 -2.91 -0.02 2.46 16 33 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.16 1.78 5.07 -2.91 -0.01 1.77 16 35 H 0.14 3.48 7.65 -2.91 -0.02 3.46 16 Total: -1.00 -64.24 327.67 3.63 -60.61 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.03 Total: 32.39 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 4.42 Total: 27.34 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -3.91 Total: -100.68 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -1.07 Total: -58.40 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 2.19 Total: -4.22 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -64.24 3.63 -60.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.941 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds