Wall clock time and date at job start Sat Apr 11 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 C 1.53004 * 109.46998 * 240.00410 * 2 1 3 5 5 C 1.50690 * 109.47428 * 59.99812 * 4 2 1 6 6 H 1.08003 * 120.00190 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00180 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99987 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47232 * 90.00109 * 9 7 5 11 11 H 1.48502 * 109.47294 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47375 * 330.00151 * 9 7 5 13 13 C 1.52996 * 109.47302 * 120.00231 * 2 1 3 14 14 N 1.46501 * 109.47061 * 300.00175 * 13 2 1 15 15 S 1.65600 * 119.99943 * 164.99958 * 14 13 2 16 16 O 1.42096 * 106.40489 * 311.45847 * 15 14 13 17 17 O 1.42103 * 106.40187 * 178.53484 * 15 14 13 18 18 C 1.76206 * 107.21712 * 65.00163 * 15 14 13 19 19 C 1.38705 * 120.40425 * 89.99923 * 18 15 14 20 20 C 1.38565 * 118.43594 * 180.02562 * 19 18 15 21 21 C 1.38398 * 119.14885 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 119.63252 * 180.02562 * 21 20 19 23 23 N 1.31943 * 120.73083 * 359.97438 * 21 20 19 24 24 C 1.31905 * 121.70686 * 0.04743 * 23 21 20 25 25 H 1.09002 * 109.47063 * 299.99521 * 1 2 3 26 26 H 1.09000 * 109.47347 * 60.00030 * 1 2 3 27 27 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47038 * 300.00159 * 3 2 1 30 30 H 1.09002 * 109.46814 * 60.00326 * 3 2 1 31 31 H 1.09005 * 109.46914 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46859 * 299.99482 * 4 2 1 33 33 H 0.96994 * 120.00084 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47071 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47441 * 59.99976 * 13 2 1 36 36 H 0.96998 * 119.99988 * 344.99579 * 14 13 2 37 37 H 1.08001 * 120.78816 * 359.97438 * 19 18 15 38 38 H 1.08000 * 120.42478 * 179.72686 * 20 19 18 39 39 H 1.08007 * 119.60917 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6281 -1.5502 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 2.2252 1.4412 -5.6613 11 1 1.0836 -0.5805 -6.3615 12 1 -0.0608 1.0352 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 16 1.6256 -0.7783 3.9212 16 8 1.0839 -2.0793 3.7396 17 8 1.1156 0.1509 4.8677 18 6 3.3302 -0.9987 4.3093 19 6 4.0244 -0.0191 5.0039 20 6 5.3636 -0.2346 5.2869 21 6 5.9596 -1.4122 4.8705 22 17 7.6366 -1.6954 5.2191 23 7 5.2672 -2.3224 4.2125 24 6 3.9913 -2.1496 3.9261 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7489 -1.2493 33 1 2.8624 -1.8815 -4.7337 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2492 36 1 1.1850 0.8644 2.3729 37 1 3.5330 0.8906 5.3160 38 1 5.9359 0.5087 5.8221 39 1 3.4571 -2.9169 3.3853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805139607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:50 Heat of formation + Delta-G solvation = -58.730799 kcal Electronic energy + Delta-G solvation = -24167.228652 eV Core-core repulsion = 20455.452476 eV Total energy + Delta-G solvation = -3711.776176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64252 -37.85355 -37.32318 -37.17253 -36.00177 -33.67744 -33.24010 -31.97755 -31.74340 -27.08758 -26.53280 -25.97161 -24.45967 -24.38678 -22.80885 -19.80018 -18.60329 -18.43875 -17.61201 -17.33213 -17.08158 -16.41810 -15.73533 -15.04315 -15.00078 -14.61104 -14.56016 -14.25969 -13.88878 -13.48704 -13.44398 -12.89880 -12.54808 -12.32999 -12.25810 -12.18220 -12.11562 -12.00077 -11.84252 -11.56644 -11.28094 -11.04083 -10.87599 -10.67411 -10.65487 -10.47135 -10.28857 -10.16297 -9.95941 -9.76687 -9.40197 -9.22893 -8.96300 -8.39167 -6.03528 -4.04630 -0.09385 0.27963 0.60770 1.25148 2.75765 3.05505 3.28884 3.36435 3.38253 3.57229 3.90320 3.95946 4.27180 4.40503 4.42553 4.67673 5.04803 5.12446 5.16264 5.27132 5.32172 5.46991 5.65920 5.73889 5.83485 6.03792 6.14477 6.25009 6.32658 6.60433 6.62898 6.96735 7.01892 7.07320 7.07468 7.09220 7.58281 7.70499 7.94848 8.36948 8.99974 9.58869 11.07885 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003228 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.342226 B = 8671.953479 C = 9986.061054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.120 3.880 14 N -1.106 6.106 15 S 2.701 3.299 16 O -0.947 6.947 17 O -0.961 6.961 18 C -0.735 4.735 19 C 0.041 3.959 20 C -0.178 4.178 21 C 0.223 3.777 22 Cl -0.018 7.018 23 N -0.488 5.488 24 C 0.224 3.776 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.419 0.581 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 3.683 19.298 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.005 4.005 14 N -0.869 5.869 15 S 2.786 3.214 16 O -0.937 6.937 17 O -0.950 6.950 18 C -0.820 4.820 19 C 0.014 3.986 20 C -0.200 4.200 21 C 0.059 3.941 22 Cl 0.011 6.989 23 N -0.199 5.199 24 C 0.065 3.935 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.257 0.743 37 H 0.181 0.819 38 H 0.174 0.826 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.760 2.322 19.486 20.193 hybrid contribution 0.312 1.509 -0.838 1.754 sum 5.072 3.831 18.649 19.702 Atomic orbital electron populations 1.21765 0.94961 1.01443 1.00464 1.20813 0.95798 0.95684 0.94339 1.21773 1.00365 0.95996 1.00447 1.19134 0.96267 0.95384 0.89593 1.21176 1.31206 1.12135 0.90479 0.92214 1.25002 0.95298 0.95051 0.99084 1.69950 1.36934 1.23010 1.23488 0.86654 0.79207 0.79407 0.83064 1.20821 1.21333 1.19922 1.21675 0.98046 0.96561 0.84213 1.55477 1.77967 1.30801 1.22686 1.01858 0.72959 0.73930 0.72623 1.93617 1.74946 1.39550 1.85591 1.93586 1.77409 1.63639 1.60411 1.32319 1.29868 1.04450 1.15405 1.21376 0.92675 0.96720 0.87805 1.21962 0.96092 0.97942 1.03974 1.22095 0.88494 0.90871 0.92665 1.98442 1.11845 1.96437 1.92201 1.67212 1.08446 1.30956 1.13284 1.22640 0.88093 0.93456 0.89282 0.94847 0.91497 0.93152 0.93423 0.91315 0.95031 0.96402 0.96150 0.93021 0.92172 0.90166 0.74334 0.81937 0.82598 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.13 0.55 -154.51 -0.08 -1.21 16 3 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 4 C 0.03 0.78 4.04 -27.89 -0.11 0.67 16 5 C -0.51 -13.11 7.65 -34.44 -0.26 -13.37 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.12 1.74 5.11 -4.04 -0.02 1.72 16 14 N -1.11 -13.05 5.33 -10.61 -0.06 -13.11 16 15 S 2.70 31.78 5.75 -107.50 -0.62 31.16 16 16 O -0.95 -13.75 16.78 -57.17 -0.96 -14.71 16 17 O -0.96 -12.66 17.36 -57.17 -0.99 -13.66 16 18 C -0.73 -7.85 5.96 -39.44 -0.24 -8.09 16 19 C 0.04 0.37 9.65 -39.29 -0.38 -0.01 16 20 C -0.18 -1.53 9.88 -39.40 -0.39 -1.92 16 21 C 0.22 2.41 7.27 -17.44 -0.13 2.28 16 22 Cl -0.02 -0.17 29.11 -51.86 -1.51 -1.68 16 23 N -0.49 -6.11 10.34 -10.36 -0.11 -6.21 16 24 C 0.22 2.60 10.68 -17.55 -0.19 2.41 16 25 H 0.03 0.47 7.20 -51.93 -0.37 0.09 16 26 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 30 H 0.03 0.40 6.60 -51.93 -0.34 0.06 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.18 7.75 -51.93 -0.40 0.77 16 36 H 0.42 4.41 6.47 -34.47 -0.22 4.19 16 37 H 0.16 1.06 7.71 -52.49 -0.40 0.65 16 38 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.19 1.89 7.63 -52.48 -0.40 1.49 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -32.17 350.52 -9.35 -41.52 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.80 Total: 0.34 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.30 Total: -19.74 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.57 Total: -44.26 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.95 Total: -28.36 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 31.78 SS G_CDS: -0.62 Total: 31.16 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.17 -9.35 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805139607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.215 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds