Wall clock time and date at job start Sat Apr 11 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48503 * 109.46926 * 239.99601 * 3 2 1 5 5 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47297 * 119.99984 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 N 1.46492 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 9 7 13 13 O 1.21592 * 119.99963 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00068 * 179.97438 * 12 11 9 15 15 N 1.40094 * 120.00282 * 0.02562 * 14 12 11 16 16 C 1.34777 * 120.00282 * 180.02562 * 15 14 12 17 17 O 1.21552 * 120.00058 * 359.97438 * 16 15 14 18 18 C 1.47843 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.40027 * 120.55133 * 179.71631 * 18 16 15 20 20 C 1.38359 * 118.28232 * 179.75639 * 19 18 16 21 21 C 1.38351 * 119.30396 * 0.53977 * 20 19 18 22 22 N 1.31924 * 121.07938 * 359.70297 * 21 20 19 23 23 C 1.31696 * 121.88221 * 0.02562 * 22 21 20 24 24 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 25 25 F 1.39900 * 109.46764 * 60.00523 * 24 9 7 26 26 F 1.39895 * 109.46931 * 180.02562 * 24 9 7 27 27 F 1.39897 * 109.47129 * 300.00544 * 24 9 7 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00153 * 334.99428 * 11 9 7 30 30 H 0.97001 * 119.99898 * 180.02562 * 14 12 11 31 31 H 0.97003 * 119.99630 * 359.97438 * 15 14 12 32 32 H 1.07993 * 120.85793 * 359.97438 * 19 18 16 33 33 H 1.08003 * 120.34962 * 180.25999 * 20 19 18 34 34 H 1.08003 * 119.46385 * 179.71716 * 21 20 19 35 35 H 1.07996 * 119.71701 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7168 -4.9703 0.9393 14 7 2.7128 -5.8368 0.4933 15 7 4.0037 -5.6547 -0.0194 16 6 4.8793 -6.6793 -0.0204 17 8 4.5490 -7.7614 0.4241 18 6 6.2414 -6.4872 -0.5620 19 6 7.1622 -7.5421 -0.5633 20 6 8.4223 -7.3117 -1.0863 21 6 8.7329 -6.0556 -1.5761 22 7 7.8463 -5.0789 -1.5572 23 6 6.6329 -5.2502 -1.0750 24 6 0.3719 -2.5805 -1.2490 25 9 1.1765 -2.5066 -2.3910 26 9 -0.3280 -3.7918 -1.2486 27 9 -0.5372 -1.5172 -1.2495 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4865 -0.3546 30 1 2.4492 -6.7003 0.8480 31 1 4.2672 -4.7913 -0.3744 32 1 6.8946 -8.5114 -0.1696 33 1 9.1572 -8.1029 -1.1079 34 1 9.7172 -5.8717 -1.9807 35 1 5.9349 -4.4261 -1.0764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664729310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:35 Heat of formation + Delta-G solvation = -115.886232 kcal Electronic energy + Delta-G solvation = -28675.962051 eV Core-core repulsion = 23875.990324 eV Total energy + Delta-G solvation = -4799.971727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.41102 -46.06534 -45.67395 -41.04942 -39.94372 -38.83491 -35.72692 -34.88927 -32.98229 -32.67743 -32.41942 -30.31056 -28.26341 -24.97474 -24.66135 -23.92424 -22.29497 -21.53779 -20.45658 -19.47963 -18.30365 -17.64252 -17.07300 -16.88387 -16.71374 -16.43505 -16.39854 -15.72657 -15.53595 -15.16848 -14.99411 -14.62098 -14.52635 -14.05723 -13.93709 -13.51829 -13.38209 -12.98200 -12.65328 -12.60697 -12.45957 -12.34748 -12.05638 -11.88575 -11.50809 -11.23509 -10.93545 -10.88807 -10.78284 -10.48567 -10.36426 -10.00428 -9.82095 -9.79076 -9.68881 -8.83234 -8.60326 -8.22411 -6.31129 -4.56618 0.20215 0.78234 1.75355 2.44153 3.15561 3.19783 3.22064 3.32272 3.39554 3.50850 3.78849 4.12918 4.17673 4.35106 4.40884 4.49561 4.54377 4.86105 4.94138 4.99437 5.13605 5.56195 5.61587 5.73141 5.78944 6.09047 6.10189 6.34086 6.46348 6.87382 7.04555 7.26471 7.36469 7.42997 7.54089 7.74905 8.33934 8.44807 8.80761 9.11883 10.60352 Molecular weight = 332.09amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.003663 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.918719 B = 7643.096684 C = 8919.685620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.067 3.933 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.261 3.739 10 H 0.090 0.910 11 N -0.722 5.722 12 C 0.708 3.292 13 O -0.557 6.557 14 N -0.535 5.535 15 N -0.517 5.517 16 C 0.566 3.434 17 O -0.532 6.532 18 C -0.179 4.179 19 C -0.012 4.012 20 C -0.179 4.179 21 C 0.124 3.876 22 N -0.482 5.482 23 C 0.138 3.862 24 C 0.415 3.585 25 F -0.209 7.209 26 F -0.216 7.216 27 F -0.135 7.135 28 H 0.270 0.730 29 H 0.388 0.612 30 H 0.439 0.561 31 H 0.421 0.579 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.437 -9.862 -2.566 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.096 0.904 9 C 0.155 3.845 10 H 0.107 0.893 11 N -0.377 5.377 12 C 0.407 3.593 13 O -0.429 6.429 14 N -0.295 5.295 15 N -0.267 5.267 16 C 0.352 3.648 17 O -0.408 6.408 18 C -0.186 4.186 19 C -0.039 4.039 20 C -0.199 4.199 21 C -0.033 4.033 22 N -0.190 5.190 23 C -0.021 4.021 24 C 0.359 3.641 25 F -0.191 7.191 26 F -0.198 7.198 27 F -0.117 7.117 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.285 0.715 31 H 0.264 0.736 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.312 -9.587 -2.304 17.380 hybrid contribution 0.491 0.133 -0.251 0.568 sum 14.804 -9.454 -2.555 17.750 Atomic orbital electron populations 1.70383 1.05882 1.27690 1.43054 1.25067 0.95165 1.00130 0.93899 0.86249 0.79338 0.81187 0.78962 1.19741 1.20825 1.19736 1.20793 0.93733 0.87926 1.56837 0.90430 1.19724 0.88145 0.84656 0.91974 0.89283 1.45337 1.17295 1.09865 1.65183 1.15902 0.83423 0.80280 0.79697 1.91045 1.17626 1.81213 1.53057 1.44746 1.01209 1.15665 1.67840 1.44704 1.04548 1.14964 1.62518 1.18001 0.83858 0.83492 0.79496 1.90813 1.78108 1.24783 1.47129 1.20715 0.94621 0.97007 1.06221 1.21733 0.91542 0.98800 0.91812 1.22204 0.97465 0.99294 1.00947 1.23101 0.98688 0.88521 0.92944 1.67754 1.02243 1.33794 1.15241 1.23069 0.93303 0.94868 0.90850 1.23149 0.80960 0.72916 0.87099 1.92989 1.74376 1.96190 1.55557 1.93080 1.81436 1.48340 1.96957 1.93410 1.68326 1.53739 1.96182 0.91900 0.77788 0.71510 0.73597 0.83229 0.83739 0.81963 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.16 9.50 55.43 0.53 -21.63 16 2 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.28 29.54 -169.99 -5.02 14.25 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.56 -13.36 8.46 -34.44 -0.29 -13.66 16 8 H 0.08 1.72 7.74 -52.48 -0.41 1.31 16 9 C 0.26 6.15 2.21 -69.08 -0.15 6.00 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.72 -13.75 4.95 -59.81 -0.30 -14.04 16 12 C 0.71 13.56 8.21 -86.92 -0.71 12.84 16 13 O -0.56 -12.87 15.75 5.29 0.08 -12.79 16 14 N -0.54 -8.16 6.26 27.64 0.17 -7.99 16 15 N -0.52 -6.27 6.21 30.53 0.19 -6.08 16 16 C 0.57 6.83 7.90 -12.33 -0.10 6.74 16 17 O -0.53 -7.91 16.26 5.32 0.09 -7.82 16 18 C -0.18 -1.73 5.89 -104.82 -0.62 -2.35 16 19 C -0.01 -0.10 9.72 -38.87 -0.38 -0.48 16 20 C -0.18 -1.09 10.10 -39.50 -0.40 -1.49 16 21 C 0.12 0.87 11.17 -17.47 -0.20 0.67 16 22 N -0.48 -4.62 10.35 -12.91 -0.13 -4.75 16 23 C 0.14 1.26 10.71 -17.13 -0.18 1.08 16 24 C 0.42 10.27 2.81 37.16 0.10 10.37 16 25 F -0.21 -4.93 16.94 2.25 0.04 -4.90 16 26 F -0.22 -5.37 15.68 2.25 0.04 -5.33 16 27 F -0.14 -3.64 12.91 2.25 0.03 -3.61 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.39 6.06 6.46 -40.82 -0.26 5.80 16 30 H 0.44 6.56 8.10 -182.60 -1.48 5.09 16 31 H 0.42 4.24 4.77 -182.60 -0.87 3.37 16 32 H 0.15 1.12 7.74 -52.49 -0.41 0.72 16 33 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 34 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.16 1.15 6.42 -52.49 -0.34 0.82 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -32.20 321.28 -6.60 -38.80 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.14 Total: 9.74 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: -3.02 Total: 21.30 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.46 Total: -54.49 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.60 kcal Atomic # 9 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.84 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.20 -6.60 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664729310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.083 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds