Wall clock time and date at job start Sat Apr 11 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47171 * 2 1 4 4 C 1.34781 * 120.00147 * 270.00331 * 3 2 1 5 5 O 1.21278 * 119.99783 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.99860 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99738 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00150 * 0.02562 * 8 7 6 10 10 C 1.38800 * 119.99994 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47071 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47245 * 120.00149 * 12 10 8 15 15 H 1.48499 * 109.47026 * 240.00521 * 12 10 8 16 16 C 1.46503 * 120.00061 * 89.99910 * 3 2 1 17 17 C 1.53950 * 113.74146 * 141.26191 * 16 3 2 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 3 19 19 C 1.34776 * 134.45584 * 204.64698 * 18 17 16 20 20 O 1.21281 * 120.00225 * 179.86905 * 19 18 17 21 21 C 1.50705 * 120.00221 * 359.86265 * 19 18 17 22 22 S 1.81399 * 109.47331 * 180.02562 * 21 19 18 23 23 C 1.81398 * 102.99921 * 180.02562 * 22 21 19 24 24 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 25 25 H 1.09000 * 109.47125 * 59.99857 * 1 2 3 26 26 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46980 * 299.99890 * 1 2 3 28 28 H 1.09003 * 109.46980 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47125 * 120.00143 * 2 1 3 30 30 H 1.09004 * 109.47346 * 300.00210 * 6 4 3 31 31 H 1.09003 * 109.47069 * 59.99963 * 6 4 3 32 32 H 0.97000 * 120.00297 * 180.02562 * 11 10 8 33 33 H 1.09002 * 112.94232 * 9.66866 * 16 3 2 34 34 H 1.08999 * 113.76704 * 205.15172 * 17 16 3 35 35 H 1.09002 * 113.76463 * 336.53966 * 17 16 3 36 36 H 1.09000 * 109.46504 * 300.00526 * 21 19 18 37 37 H 1.09001 * 109.46554 * 59.99813 * 21 19 18 38 38 H 1.09001 * 109.46823 * 299.99762 * 23 22 21 39 39 H 1.08998 * 109.47323 * 59.99817 * 23 22 21 40 40 H 1.09002 * 109.46791 * 180.02562 * 23 22 21 41 41 H 1.08999 * 113.77186 * 221.15323 * 24 18 17 42 42 H 1.09004 * 113.76624 * 89.74800 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1601 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3849 2.4148 -3.8480 8 6 2.0127 1.3583 -5.2082 9 1 1.6574 0.3540 -5.0305 10 6 2.1751 1.8171 -6.5081 11 7 2.6076 3.0412 -6.7246 12 14 1.7799 0.6974 -7.9501 13 1 1.3144 -0.6182 -7.4422 14 1 0.7120 1.3140 -8.7775 15 1 2.9986 0.5062 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.5145 2.9675 1.2559 18 7 2.6096 4.0506 0.8171 19 6 2.7744 5.1975 0.1286 20 8 1.8213 5.9137 -0.0937 21 6 4.1432 5.5901 -0.3649 22 16 4.0372 7.1712 -1.2477 23 6 5.7525 7.4701 -1.7567 24 6 1.4533 3.3711 1.4329 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.6228 0.4187 -2.5299 31 1 0.9444 1.0114 -2.5302 32 1 2.7208 3.3621 -7.6330 33 1 2.2066 1.4079 2.1315 34 1 3.9484 3.1302 2.2425 35 1 4.2528 2.6798 0.5074 36 1 4.8196 5.6926 0.4836 37 1 4.5204 4.8214 -1.0395 38 1 6.3891 7.5252 -0.8737 39 1 6.0889 6.6546 -2.3969 40 1 5.8101 8.4104 -2.3050 41 1 0.5489 3.4052 0.8255 42 1 1.2805 3.6526 2.4717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:42 Heat of formation + Delta-G solvation = -25.534786 kcal Electronic energy + Delta-G solvation = -25041.600469 eV Core-core repulsion = 21469.140581 eV Total energy + Delta-G solvation = -3572.459888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07627 -39.87983 -38.22275 -36.57795 -34.60432 -32.23076 -31.06470 -30.82543 -29.70873 -28.52868 -27.66760 -27.06491 -24.28349 -23.43660 -20.70189 -19.89538 -19.14630 -18.27814 -17.89183 -17.56271 -17.41099 -16.90331 -16.64756 -16.38182 -16.16237 -15.89090 -15.06467 -14.72887 -14.64825 -14.62170 -14.51151 -14.39259 -14.11901 -14.06010 -13.55398 -13.26022 -13.19191 -13.16899 -13.08015 -12.92752 -12.79064 -12.64221 -12.56385 -12.20022 -11.95204 -11.70788 -11.17642 -10.95041 -10.80534 -10.67734 -10.23550 -9.71023 -9.30000 -8.68599 -8.65815 -8.36045 -6.13257 0.53554 1.25429 1.38264 1.44749 1.54903 1.62454 1.65407 1.79943 2.07665 2.09795 2.26491 2.97791 3.24800 3.40159 3.46420 3.75261 4.02313 4.06203 4.12912 4.21603 4.29618 4.32066 4.33094 4.38959 4.44958 4.48906 4.51031 4.60557 4.66005 4.67900 4.78989 4.84777 5.01751 5.03902 5.07113 5.38856 5.40171 5.75297 6.17369 6.32648 6.81885 7.05008 7.28177 7.30322 8.73003 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009233 B = 0.004880 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.998762 B = 5736.562127 C = 8285.812643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.527 3.473 5 O -0.529 6.529 6 C -0.123 4.123 7 S -0.148 6.148 8 C -0.545 4.545 9 H 0.079 0.921 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.997 3.003 13 H -0.256 1.256 14 H -0.276 1.276 15 H -0.271 1.271 16 C 0.127 3.873 17 C 0.097 3.903 18 N -0.620 5.620 19 C 0.573 3.427 20 O -0.596 6.596 21 C -0.086 4.086 22 S -0.278 6.278 23 C -0.117 4.117 24 C 0.088 3.912 25 H 0.024 0.976 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.270 0.730 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.043 0.957 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -8.032 22.705 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.313 3.687 5 O -0.404 6.404 6 C -0.275 4.275 7 S 0.080 5.920 8 C -0.693 4.693 9 H 0.097 0.903 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.819 3.181 13 H -0.179 1.179 14 H -0.202 1.202 15 H -0.197 1.197 16 C 0.023 3.977 17 C -0.025 4.025 18 N -0.354 5.354 19 C 0.363 3.637 20 O -0.479 6.479 21 C -0.237 4.237 22 S -0.054 6.054 23 C -0.285 4.285 24 C -0.035 4.035 25 H 0.044 0.956 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.194 0.806 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.061 0.939 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.851 -5.065 22.178 23.073 hybrid contribution 0.120 -2.087 -1.509 2.578 sum 3.971 -7.152 20.669 22.229 Atomic orbital electron populations 1.22214 0.95927 1.03189 1.01521 1.21877 0.94406 0.80078 1.05332 1.47786 1.66131 1.15223 1.03699 1.20018 0.77284 0.86131 0.85235 1.90720 1.44755 1.17969 1.86996 1.23408 1.04906 1.03111 0.96051 1.85634 1.87319 1.21901 0.97193 1.23209 1.51627 1.01567 0.92891 0.90285 1.26118 0.94232 0.97107 1.01703 1.70201 1.44359 1.17871 1.22327 0.84938 0.78139 0.78207 0.76864 1.17934 1.20197 1.19665 1.22824 0.94132 0.93351 0.87407 1.23878 0.94648 0.82522 1.01469 1.49563 1.13265 1.19734 1.52798 1.19105 0.89066 0.79086 0.76436 1.90651 1.43651 1.53918 1.59634 1.23188 0.99185 0.97902 1.03419 1.87658 1.16721 1.27224 1.73821 1.23499 0.93422 1.06267 1.05328 1.23857 0.90791 0.89789 0.99102 0.95648 0.89473 0.91324 0.90711 0.85564 0.87872 0.89186 0.92091 0.80559 0.84325 0.91265 0.85135 0.88194 0.88077 0.90672 0.86756 0.93873 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.24 71.98 0.74 -1.80 16 2 C 0.10 1.44 5.96 86.38 0.51 1.95 16 3 N -0.59 -12.51 2.73 -803.49 -2.19 -14.70 16 4 C 0.53 18.15 7.18 87.66 0.63 18.78 16 5 O -0.53 -21.99 9.07 -3.02 -0.03 -22.01 16 6 C -0.12 -4.92 4.71 71.24 0.34 -4.58 16 7 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 8 C -0.55 -31.72 9.50 67.95 0.65 -31.08 16 9 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 10 C 0.01 0.76 5.49 84.86 0.47 1.23 16 11 N -0.91 -57.41 13.22 21.65 0.29 -57.13 16 12 Si 1.00 44.50 29.55 68.60 2.03 46.53 16 13 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C 0.13 1.79 4.72 46.75 0.22 2.01 16 17 C 0.10 1.61 7.58 86.44 0.66 2.26 16 18 N -0.62 -17.49 2.01 -836.48 -1.68 -19.17 16 19 C 0.57 22.02 5.88 87.66 0.52 22.54 16 20 O -0.60 -29.33 16.59 -3.03 -0.05 -29.38 16 21 C -0.09 -2.87 6.08 71.24 0.43 -2.44 16 22 S -0.28 -10.29 21.52 -56.49 -1.22 -11.51 16 23 C -0.12 -2.90 10.76 113.37 1.22 -1.69 16 24 C 0.09 1.87 8.28 86.49 0.72 2.59 16 25 H 0.02 0.56 7.22 -2.39 -0.02 0.54 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.21 6.44 -2.39 -0.02 1.19 16 29 H 0.13 0.63 7.96 -2.39 -0.02 0.61 16 30 H 0.10 3.69 7.40 -2.39 -0.02 3.67 16 31 H 0.09 3.48 7.19 -2.39 -0.02 3.47 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.18 0.42 7.97 -2.39 -0.02 0.40 16 34 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.44 7.47 -2.39 -0.02 1.42 16 36 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.10 3.62 7.52 -2.39 -0.02 3.60 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -94.07 371.52 4.09 -89.98 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.01 Total: 17.09 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.09 Total: 9.77 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.58 Total: -90.99 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.08 Total: -51.39 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -18.62 SS G_CDS: -2.38 Total: -21.00 kcal Total: -94.07 4.09 -89.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.450 kcal (2) G-P(sol) polarization free energy of solvation -94.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds