Wall clock time and date at job start Sat Apr 11 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 S 1.81397 * 109.46965 * 119.99813 * 2 1 3 5 5 O 1.42103 * 110.54553 * 73.37466 * 4 2 1 6 6 O 1.42097 * 110.54316 * 296.62468 * 4 2 1 7 7 C 1.76199 * 104.45182 * 184.99940 * 4 2 1 8 8 C 1.38406 * 119.85139 * 89.99613 * 7 4 2 9 9 C 1.37916 * 120.15006 * 179.97438 * 8 7 4 10 10 C 1.39660 * 119.84974 * 0.02760 * 9 8 7 11 11 C 1.47936 * 120.14706 * 179.97438 * 10 9 8 12 12 C 1.40423 * 120.79230 * 359.72253 * 11 10 9 13 13 N 1.31587 * 119.09558 * 179.73430 * 12 11 10 14 14 C 1.33647 * 120.82808 * 0.57487 * 13 12 11 15 15 C 1.41095 * 119.13589 * 179.70157 * 14 13 12 16 16 H 1.08000 * 119.99662 * 179.97438 * 15 14 13 17 17 C 1.40142 * 119.99832 * 359.97438 * 15 14 13 18 18 N 1.30655 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47298 * 89.99886 * 19 17 15 21 21 H 1.48503 * 109.46732 * 209.99790 * 19 17 15 22 22 H 1.48494 * 109.46930 * 329.99148 * 19 17 15 23 23 N 1.33643 * 121.73051 * 359.67449 * 14 13 12 24 24 C 1.31585 * 120.83207 * 0.02562 * 23 14 13 25 25 C 1.39652 * 119.70279 * 0.25288 * 10 9 8 26 26 C 1.37920 * 119.84951 * 359.48842 * 25 10 9 27 27 H 1.09000 * 109.47264 * 300.00723 * 1 2 3 28 28 H 1.09003 * 109.46841 * 60.00396 * 1 2 3 29 29 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47140 * 239.99766 * 2 1 3 31 31 H 1.09000 * 109.47428 * 59.99377 * 3 2 1 32 32 H 1.08995 * 109.47459 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46726 * 299.99675 * 3 2 1 34 34 H 1.08001 * 119.92495 * 0.02562 * 8 7 4 35 35 H 1.07999 * 120.07993 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.45470 * 0.02562 * 12 11 10 37 37 H 0.96999 * 120.00101 * 179.97438 * 18 17 15 38 38 H 1.08006 * 120.45038 * 180.02562 * 24 23 14 39 39 H 1.07995 * 120.07566 * 179.72353 * 25 10 9 40 40 H 1.07997 * 119.92766 * 180.25841 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.9419 -2.2578 1.3608 6 8 1.7386 -0.1593 2.6551 7 6 3.8837 -0.6503 1.4239 8 6 4.4690 0.4480 2.0295 9 6 5.8375 0.6141 1.9889 10 6 6.6330 -0.3288 1.3343 11 6 8.1016 -0.1569 1.2862 12 6 8.7155 0.9529 1.8890 13 7 10.0249 1.0699 1.8306 14 6 10.7667 0.1555 1.1983 15 6 12.1673 0.3196 1.1521 16 1 12.7801 -0.4111 0.6452 17 6 12.7631 1.4307 1.7640 18 7 12.0216 2.3149 2.3768 19 14 14.6174 1.6484 1.7022 20 1 14.9841 2.4294 0.4937 21 1 15.0714 2.3729 2.9164 22 1 15.2706 0.3160 1.6477 23 7 10.2167 -0.9105 0.6090 24 6 8.9143 -1.0966 0.6317 25 6 6.0355 -1.4316 0.7202 26 6 4.6662 -1.5883 0.7730 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 3.8527 1.1762 2.5358 35 1 6.2930 1.4713 2.4622 36 1 8.1216 1.6978 2.3977 37 1 12.4341 3.0837 2.8006 38 1 8.4764 -1.9605 0.1538 39 1 6.6445 -2.1621 0.2085 40 1 4.2032 -2.4429 0.3021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240205193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:36 Heat of formation + Delta-G solvation = -10.177230 kcal Electronic energy + Delta-G solvation = -24952.402027 eV Core-core repulsion = 21245.164141 eV Total energy + Delta-G solvation = -3707.237886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.51902 -38.33348 -37.08525 -35.89137 -35.25885 -34.29459 -32.49232 -32.11185 -30.71733 -29.33269 -27.66703 -26.38999 -23.75382 -23.26960 -22.67629 -21.56917 -20.99192 -18.86641 -18.21941 -17.73540 -16.80940 -16.35460 -15.83299 -15.65646 -15.41606 -14.90481 -14.73411 -14.07827 -13.97890 -13.63064 -13.42192 -13.38303 -13.27734 -12.89910 -12.66332 -12.58215 -12.45222 -12.36873 -12.04857 -11.92151 -11.74226 -11.67771 -11.59281 -11.50838 -11.06786 -10.79936 -10.74999 -10.53966 -10.29588 -9.99957 -9.51866 -9.41873 -9.27404 -8.76703 -7.70946 -7.62111 -6.90401 -5.04764 0.09070 0.94052 1.67400 2.38259 2.75628 2.85958 2.88680 2.92079 2.97769 3.61301 3.72896 4.00980 4.06671 4.29979 4.41716 4.53341 4.79128 5.03754 5.12047 5.15367 5.23197 5.33975 5.37121 5.48352 5.48559 5.55300 5.62706 5.63652 5.70145 5.76125 5.82457 5.99524 6.12218 6.14221 6.39516 6.51254 6.55703 6.64406 6.82152 7.17967 7.18963 7.34720 7.79502 8.11095 8.20016 8.77496 9.73176 9.92958 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002332 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.235526 B =12002.032488 C =12319.919793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.574 4.574 3 C -0.144 4.144 4 S 2.499 3.501 5 O -0.948 6.948 6 O -0.943 6.943 7 C -0.703 4.703 8 C -0.008 4.008 9 C -0.172 4.172 10 C 0.100 3.900 11 C -0.350 4.350 12 C 0.192 3.808 13 N -0.508 5.508 14 C 0.373 3.627 15 C -0.357 4.357 16 H 0.101 0.899 17 C 0.055 3.945 18 N -0.686 5.686 19 Si 0.926 3.074 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.256 1.256 23 N -0.591 5.591 24 C 0.199 3.801 25 C -0.174 4.174 26 C -0.010 4.010 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.283 0.717 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 0.491 -4.166 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.683 4.683 3 C -0.202 4.202 4 S 2.681 3.319 5 O -0.945 6.945 6 O -0.941 6.941 7 C -0.793 4.793 8 C -0.027 4.027 9 C -0.191 4.191 10 C 0.097 3.903 11 C -0.360 4.360 12 C 0.013 3.987 13 N -0.224 5.224 14 C 0.143 3.857 15 C -0.389 4.389 16 H 0.119 0.881 17 C -0.175 4.175 18 N -0.305 5.305 19 Si 0.749 3.251 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.179 1.179 23 N -0.309 5.309 24 C 0.022 3.978 25 C -0.193 4.193 26 C -0.029 4.029 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.028 0.435 -3.436 14.449 hybrid contribution 0.303 0.376 -0.569 0.747 sum -13.724 0.811 -4.005 14.320 Atomic orbital electron populations 1.21668 0.90268 1.03636 1.04751 1.30053 1.06242 1.10349 1.21609 1.21693 1.02518 0.91581 1.04364 1.05271 0.75059 0.74969 0.76591 1.93532 1.85599 1.28400 1.86961 1.93524 1.82190 1.75511 1.42840 1.29855 1.23489 1.07086 1.18863 1.20660 0.95331 0.93996 0.92741 1.21247 0.93147 1.00974 1.03775 1.19029 0.92352 0.90865 0.88011 1.19768 0.91884 1.05008 1.19336 1.23111 0.92244 0.92699 0.90657 1.69367 1.03766 1.28932 1.20291 1.19989 0.94648 0.84061 0.87000 1.19680 0.89673 1.04892 1.24644 0.88147 1.26320 1.02037 0.95077 0.94061 1.70101 1.37651 1.06019 1.16744 0.85994 0.79947 0.80121 0.79082 1.18822 1.19563 1.17926 1.68675 1.11665 1.24749 1.25791 1.22752 0.89763 0.94820 0.90435 1.21218 0.94337 0.99497 1.04240 1.20651 0.93969 0.95337 0.92968 0.90745 0.89988 0.91120 0.84457 0.90679 0.90434 0.90550 0.85073 0.85422 0.84805 0.90534 0.84737 0.85555 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.57 -4.83 3.48 -26.73 -0.09 -4.92 16 3 C -0.14 -1.14 8.89 37.16 0.33 -0.81 16 4 S 2.50 30.97 4.66 -107.50 -0.50 30.47 16 5 O -0.95 -14.22 17.11 -57.54 -0.98 -15.20 16 6 O -0.94 -13.92 17.10 -57.54 -0.98 -14.90 16 7 C -0.70 -9.78 4.89 -39.45 -0.19 -9.97 16 8 C -0.01 -0.12 8.43 -39.64 -0.33 -0.45 16 9 C -0.17 -2.73 9.45 -39.17 -0.37 -3.10 16 10 C 0.10 1.76 5.88 -104.87 -0.62 1.14 16 11 C -0.35 -7.23 5.93 -104.28 -0.62 -7.85 16 12 C 0.19 4.26 10.70 -16.83 -0.18 4.08 16 13 N -0.51 -13.07 7.83 -12.41 -0.10 -13.17 16 14 C 0.37 9.81 7.35 -158.16 -1.16 8.65 16 15 C -0.36 -8.98 9.35 -37.78 -0.35 -9.33 16 16 H 0.10 2.39 7.85 -52.49 -0.41 1.98 16 17 C 0.05 1.26 5.50 -17.34 -0.10 1.17 16 18 N -0.69 -16.47 11.40 55.56 0.63 -15.84 16 19 Si 0.93 16.72 29.56 -169.99 -5.02 11.70 16 20 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 21 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 22 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 23 N -0.59 -14.65 10.34 -12.41 -0.13 -14.78 16 24 C 0.20 4.27 10.70 -16.83 -0.18 4.09 16 25 C -0.17 -2.72 9.45 -39.17 -0.37 -3.09 16 26 C -0.01 -0.14 9.45 -39.63 -0.37 -0.52 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.14 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.65 6.58 -51.93 -0.34 0.31 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.13 1.59 7.56 -52.49 -0.40 1.19 16 35 H 0.13 1.87 6.29 -52.49 -0.33 1.54 16 36 H 0.13 2.58 6.33 -52.49 -0.33 2.24 16 37 H 0.28 6.02 8.29 -40.82 -0.34 5.69 16 38 H 0.14 2.40 6.33 -52.48 -0.33 2.07 16 39 H 0.13 1.78 6.29 -52.49 -0.33 1.45 16 40 H 0.13 1.58 7.56 -52.49 -0.40 1.18 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -31.71 349.93 -10.63 -42.34 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.54 Total: 5.70 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -4.27 Total: -21.59 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.41 Total: -43.78 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.97 Total: -30.11 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.02 Total: 11.70 kcal Atomic # 16 Polarization: 30.97 SS G_CDS: -0.50 Total: 30.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.71 -10.63 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240205193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.161 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds