Wall clock time and date at job start Sat Apr 11 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 S 1.81397 * 109.46965 * 119.99813 * 2 1 3 5 5 O 1.42103 * 110.54553 * 73.37466 * 4 2 1 6 6 O 1.42097 * 110.54316 * 296.62468 * 4 2 1 7 7 C 1.76199 * 104.45182 * 184.99940 * 4 2 1 8 8 C 1.38406 * 119.85139 * 89.99613 * 7 4 2 9 9 C 1.37916 * 120.15006 * 179.97438 * 8 7 4 10 10 C 1.39660 * 119.84974 * 0.02760 * 9 8 7 11 11 C 1.47936 * 120.14706 * 179.97438 * 10 9 8 12 12 C 1.40423 * 120.79230 * 359.72253 * 11 10 9 13 13 N 1.31587 * 119.09558 * 179.73430 * 12 11 10 14 14 C 1.33647 * 120.82808 * 0.57487 * 13 12 11 15 15 C 1.41095 * 119.13589 * 179.70157 * 14 13 12 16 16 H 1.08000 * 119.99662 * 179.97438 * 15 14 13 17 17 C 1.40142 * 119.99832 * 359.97438 * 15 14 13 18 18 N 1.30655 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47298 * 89.99886 * 19 17 15 21 21 H 1.48503 * 109.46732 * 209.99790 * 19 17 15 22 22 H 1.48494 * 109.46930 * 329.99148 * 19 17 15 23 23 N 1.33643 * 121.73051 * 359.67449 * 14 13 12 24 24 C 1.31585 * 120.83207 * 0.02562 * 23 14 13 25 25 C 1.39652 * 119.70279 * 0.25288 * 10 9 8 26 26 C 1.37920 * 119.84951 * 359.48842 * 25 10 9 27 27 H 1.09000 * 109.47264 * 300.00723 * 1 2 3 28 28 H 1.09003 * 109.46841 * 60.00396 * 1 2 3 29 29 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47140 * 239.99766 * 2 1 3 31 31 H 1.09000 * 109.47428 * 59.99377 * 3 2 1 32 32 H 1.08995 * 109.47459 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46726 * 299.99675 * 3 2 1 34 34 H 1.08001 * 119.92495 * 0.02562 * 8 7 4 35 35 H 1.07999 * 120.07993 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.45470 * 0.02562 * 12 11 10 37 37 H 0.96999 * 120.00101 * 179.97438 * 18 17 15 38 38 H 1.08006 * 120.45038 * 180.02562 * 24 23 14 39 39 H 1.07995 * 120.07566 * 179.72353 * 25 10 9 40 40 H 1.07997 * 119.92766 * 180.25841 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.9419 -2.2578 1.3608 6 8 1.7386 -0.1593 2.6551 7 6 3.8837 -0.6503 1.4239 8 6 4.4690 0.4480 2.0295 9 6 5.8375 0.6141 1.9889 10 6 6.6330 -0.3288 1.3343 11 6 8.1016 -0.1569 1.2862 12 6 8.7155 0.9529 1.8890 13 7 10.0249 1.0699 1.8306 14 6 10.7667 0.1555 1.1983 15 6 12.1673 0.3196 1.1521 16 1 12.7801 -0.4111 0.6452 17 6 12.7631 1.4307 1.7640 18 7 12.0216 2.3149 2.3768 19 14 14.6174 1.6484 1.7022 20 1 14.9841 2.4294 0.4937 21 1 15.0714 2.3729 2.9164 22 1 15.2706 0.3160 1.6477 23 7 10.2167 -0.9105 0.6090 24 6 8.9143 -1.0966 0.6317 25 6 6.0355 -1.4316 0.7202 26 6 4.6662 -1.5883 0.7730 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 3.8527 1.1762 2.5358 35 1 6.2930 1.4713 2.4622 36 1 8.1216 1.6978 2.3977 37 1 12.4341 3.0837 2.8006 38 1 8.4764 -1.9605 0.1538 39 1 6.6445 -2.1621 0.2085 40 1 4.2032 -2.4429 0.3021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240205193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:34 Heat of formation + Delta-G solvation = -30.330198 kcal Electronic energy + Delta-G solvation = -24953.275926 eV Core-core repulsion = 21245.164141 eV Total energy + Delta-G solvation = -3708.111784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.13214 -39.73073 -38.15955 -36.97020 -36.00347 -35.88108 -34.08347 -33.76597 -31.96308 -30.87768 -28.42628 -27.85806 -25.30720 -24.72800 -23.51724 -22.94047 -22.45062 -20.05512 -19.76384 -18.84283 -18.07178 -17.66443 -17.22249 -16.93298 -16.71315 -16.36147 -15.65070 -15.29268 -15.24231 -15.12709 -14.55828 -14.47184 -14.27112 -14.13099 -13.93249 -13.87606 -13.73486 -13.20835 -13.16392 -13.14332 -13.00090 -12.97473 -12.80015 -12.34143 -12.29987 -12.05604 -12.00925 -11.85567 -11.54560 -11.31604 -11.23036 -11.04145 -10.79767 -9.96524 -9.39269 -9.28369 -8.58999 -6.84343 -0.87983 -0.39762 0.44711 0.81316 0.99954 1.37673 1.48838 1.54567 1.94550 2.13437 2.47702 2.76903 3.03824 3.14859 3.62676 3.68625 3.81181 3.82320 3.85941 3.94861 3.95990 4.07780 4.22479 4.27264 4.44585 4.49218 4.64488 4.69868 4.76699 4.79009 4.83062 4.91011 4.94997 5.12740 5.15486 5.17431 5.22129 5.24740 5.25795 5.66293 5.73352 5.96290 6.00848 6.35999 6.44128 7.03238 8.06053 8.19493 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002332 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.235526 B =12002.032488 C =12319.919793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.542 4.542 3 C -0.154 4.154 4 S 2.497 3.503 5 O -0.977 6.977 6 O -0.971 6.971 7 C -0.693 4.693 8 C -0.012 4.012 9 C -0.172 4.172 10 C 0.069 3.931 11 C -0.335 4.335 12 C 0.172 3.828 13 N -0.540 5.540 14 C 0.348 3.652 15 C -0.403 4.403 16 H 0.097 0.903 17 C 0.018 3.982 18 N -0.727 5.727 19 Si 1.004 2.996 20 H -0.257 1.257 21 H -0.260 1.260 22 H -0.254 1.254 23 N -0.619 5.619 24 C 0.184 3.816 25 C -0.170 4.170 26 C -0.016 4.016 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.291 0.709 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 0.675 -5.310 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.655 4.655 3 C -0.212 4.212 4 S 2.682 3.318 5 O -0.974 6.974 6 O -0.968 6.968 7 C -0.780 4.780 8 C -0.031 4.031 9 C -0.191 4.191 10 C 0.067 3.933 11 C -0.345 4.345 12 C -0.004 4.004 13 N -0.257 5.257 14 C 0.116 3.884 15 C -0.436 4.436 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.347 5.347 19 Si 0.822 3.178 20 H -0.181 1.181 21 H -0.184 1.184 22 H -0.178 1.178 23 N -0.338 5.338 24 C 0.010 3.990 25 C -0.189 4.189 26 C -0.034 4.034 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.102 0.898 38 H 0.185 0.815 39 H 0.158 0.842 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.654 0.580 -4.539 17.271 hybrid contribution 0.525 0.251 -0.271 0.642 sum -16.129 0.831 -4.810 16.851 Atomic orbital electron populations 1.21875 0.88782 1.04634 1.06204 1.29817 1.07243 1.10036 1.18438 1.21850 1.02297 0.91219 1.05791 1.05449 0.73998 0.74566 0.77813 1.93497 1.85406 1.30637 1.87841 1.93489 1.81922 1.75654 1.45783 1.30329 1.25091 1.06058 1.16567 1.20923 0.94814 0.94689 0.92643 1.21424 0.93892 1.00748 1.03063 1.18991 0.90757 0.92859 0.90688 1.20000 0.93666 1.03635 1.17180 1.23577 0.91789 0.93960 0.91078 1.69337 1.05176 1.29636 1.21516 1.20394 0.95567 0.84744 0.87664 1.19932 0.89773 1.06625 1.27232 0.88449 1.27223 1.06792 0.93907 0.92858 1.70152 1.39827 1.06830 1.17924 0.84879 0.73487 0.79997 0.79462 1.18121 1.18430 1.17792 1.68691 1.13302 1.24895 1.26867 1.23331 0.89098 0.96039 0.90551 1.21435 0.95263 0.98881 1.03370 1.20968 0.93406 0.96134 0.92938 0.90578 0.87303 0.90516 0.81927 0.90359 0.91024 0.88147 0.82950 0.84772 0.82641 0.89768 0.81466 0.84231 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.20 71.98 0.66 -0.89 16 2 C -0.54 -6.86 3.48 30.59 0.11 -6.75 16 3 C -0.15 -1.82 8.89 71.98 0.64 -1.18 16 4 S 2.50 55.27 4.66 -56.49 -0.26 55.01 16 5 O -0.98 -27.07 17.11 -127.65 -2.18 -29.25 16 6 O -0.97 -26.72 17.10 -127.65 -2.18 -28.90 16 7 C -0.69 -17.51 4.89 22.35 0.11 -17.40 16 8 C -0.01 -0.31 8.43 22.23 0.19 -0.13 16 9 C -0.17 -5.23 9.45 22.54 0.21 -5.02 16 10 C 0.07 2.36 5.88 -20.02 -0.12 2.25 16 11 C -0.34 -13.99 5.93 -19.64 -0.12 -14.11 16 12 C 0.17 7.89 10.70 85.26 0.91 8.81 16 13 N -0.54 -29.11 7.83 -193.17 -1.51 -30.62 16 14 C 0.35 19.30 7.35 134.91 0.99 20.29 16 15 C -0.40 -21.39 9.35 23.43 0.22 -21.17 16 16 H 0.10 4.95 7.85 -2.91 -0.02 4.93 16 17 C 0.02 0.86 5.50 85.33 0.47 1.33 16 18 N -0.73 -36.41 11.40 21.85 0.25 -36.16 16 19 Si 1.00 35.16 29.56 68.60 2.03 37.19 16 20 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 N -0.62 -31.93 10.34 -193.16 -2.00 -33.93 16 24 C 0.18 8.01 10.70 85.26 0.91 8.93 16 25 C -0.17 -5.02 9.45 22.54 0.21 -4.81 16 26 C -0.02 -0.41 9.45 22.24 0.21 -0.20 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.96 6.58 -2.39 -0.02 0.94 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.15 3.32 7.56 -2.91 -0.02 3.30 16 35 H 0.13 3.81 6.29 -2.91 -0.02 3.79 16 36 H 0.16 6.13 6.33 -2.91 -0.02 6.11 16 37 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 38 H 0.17 5.87 6.33 -2.91 -0.02 5.85 16 39 H 0.14 3.65 6.29 -2.91 -0.02 3.63 16 40 H 0.15 3.23 7.56 -2.91 -0.02 3.21 16 Total: -1.00 -72.45 349.93 0.83 -71.62 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 1.08 Total: 25.10 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 5.61 Total: -30.06 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -3.26 Total: -100.71 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -4.37 Total: -58.15 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.26 Total: 55.01 kcal Total: -72.45 0.83 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240205193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.294 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds