Wall clock time and date at job start Sat Apr 11 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48506 * 109.47334 * 265.10875 * 3 2 1 5 5 H 1.48507 * 109.47482 * 25.10940 * 3 2 1 6 6 H 1.48497 * 109.47523 * 145.11140 * 3 2 1 7 7 C 1.38806 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00445 * 343.21235 * 7 2 1 9 9 N 1.36937 * 119.99922 * 163.20989 * 7 2 1 10 10 C 1.47423 * 125.65043 * 331.52773 * 9 7 2 11 11 C 1.54907 * 104.92947 * 204.09422 * 10 9 7 12 12 C 1.55272 * 101.53140 * 323.12621 * 11 10 9 13 13 C 1.47029 * 125.64981 * 151.55302 * 9 7 2 14 14 H 1.08995 * 109.88236 * 59.50053 * 13 9 7 15 15 C 1.53003 * 109.87940 * 298.33628 * 13 9 7 16 16 N 1.46502 * 109.47048 * 56.86812 * 15 13 9 17 17 C 1.34780 * 119.99919 * 185.94435 * 16 15 13 18 18 O 1.21612 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.47373 * 119.99936 * 179.97438 * 17 16 15 20 20 C 1.47022 * 127.19486 * 0.02562 * 19 17 16 21 21 C 1.34175 * 105.95367 * 179.97438 * 20 19 17 22 22 O 1.34212 * 109.12673 * 0.02562 * 21 20 19 23 23 C 1.33655 * 110.90839 * 359.76278 * 22 21 20 24 24 C 1.50698 * 125.80185 * 180.26540 * 23 22 21 25 25 F 1.39897 * 109.47126 * 270.13910 * 24 23 22 26 26 F 1.39902 * 109.47035 * 30.13988 * 24 23 22 27 27 F 1.39897 * 109.47151 * 150.13682 * 24 23 22 28 28 H 0.96998 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36797 * 322.98787 * 10 9 7 30 30 H 1.09002 * 110.36844 * 85.20047 * 10 9 7 31 31 H 1.09004 * 111.00681 * 81.12057 * 11 10 9 32 32 H 1.09000 * 111.00496 * 204.96599 * 11 10 9 33 33 H 1.09000 * 110.62347 * 277.00783 * 12 11 10 34 34 H 1.08997 * 110.76039 * 153.77769 * 12 11 10 35 35 H 1.09001 * 109.47151 * 176.86578 * 15 13 9 36 36 H 1.09001 * 109.47346 * 296.86839 * 15 13 9 37 37 H 0.96995 * 120.00289 * 5.94138 * 16 15 13 38 38 H 1.08003 * 127.01839 * 359.97438 * 20 19 17 39 39 H 1.07999 * 125.43290 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6011 1.9867 -1.3950 5 1 1.3998 2.6804 0.5941 6 1 3.4922 1.4723 0.8008 7 6 2.0102 -1.2021 0.0005 8 1 1.5048 -2.1174 0.2711 9 7 3.3358 -1.2275 -0.3420 10 6 4.0052 -0.2845 -1.2562 11 6 5.2402 -1.0533 -1.7886 12 6 5.6728 -1.8546 -0.5309 13 6 4.3271 -2.2002 0.1406 14 1 4.0223 -3.2091 -0.1375 15 6 4.4620 -2.0948 1.6610 16 7 3.1514 -2.2997 2.2829 17 6 3.0027 -2.1329 3.6121 18 8 3.9566 -1.8128 4.2952 19 6 1.6843 -2.3385 4.2376 20 6 0.4335 -2.7246 3.5683 21 6 -0.4961 -2.7908 4.5336 22 8 0.0699 -2.4834 5.7110 23 6 1.3704 -2.2148 5.5594 24 6 2.3269 -1.8373 6.6611 25 9 2.3354 -0.4469 6.8151 26 9 1.9197 -2.4367 7.8578 27 9 3.6134 -2.2781 6.3330 28 1 -0.4850 0.8400 0.0004 29 1 3.3414 -0.0172 -2.0784 30 1 4.3185 0.6093 -0.7166 31 1 4.9622 -1.7241 -2.6017 32 1 6.0236 -0.3641 -2.1035 33 1 6.2844 -1.2365 0.1264 34 1 6.2062 -2.7616 -0.8153 35 1 5.1563 -2.8555 2.0178 36 1 4.8387 -1.1065 1.9247 37 1 2.3907 -2.5553 1.7382 38 1 0.2919 -2.9159 2.5148 39 1 -1.5342 -3.0500 4.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027908521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:00 Heat of formation + Delta-G solvation = -132.833169 kcal Electronic energy + Delta-G solvation = -30010.249589 eV Core-core repulsion = 25313.083331 eV Total energy + Delta-G solvation = -4697.166258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.02077 -47.60179 -47.42337 -42.65738 -39.16820 -37.86839 -34.01831 -33.02453 -32.75000 -30.92596 -30.08809 -29.47182 -26.18281 -25.05925 -24.09550 -22.76619 -21.39012 -20.92666 -19.89128 -19.69783 -18.68519 -18.44573 -18.10503 -17.20820 -16.68317 -16.20312 -15.79444 -15.46432 -15.30437 -15.01457 -14.47336 -14.39015 -14.24959 -13.94932 -13.77541 -13.62918 -13.56808 -13.44549 -13.10719 -12.95236 -12.75694 -12.62871 -12.56668 -12.13063 -11.75448 -11.36296 -11.22747 -11.01659 -10.73555 -10.58154 -10.15333 -10.05082 -9.84098 -9.62469 -9.50191 -9.04256 -8.82716 -8.36844 -7.10426 -6.13931 -3.51874 0.99296 1.96437 2.10909 3.07379 3.26221 3.41265 3.45405 3.53621 3.70814 3.80425 4.37714 4.41513 4.41937 4.72897 4.81688 4.94366 5.11028 5.20665 5.32426 5.34324 5.48636 5.59171 5.72427 5.78954 5.85976 6.05579 6.07087 6.19353 6.23807 6.27218 6.33835 6.58302 6.71152 6.76292 6.77849 7.02813 7.61170 8.06994 8.13578 8.60265 8.71046 9.50393 10.05526 11.00857 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.004557 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.757584 B = 6142.526716 C = 6898.801599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.036 3.964 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.050 0.950 15 C 0.115 3.885 16 N -0.683 5.683 17 C 0.567 3.433 18 O -0.543 6.543 19 C -0.140 4.140 20 C -0.174 4.174 21 C -0.006 4.006 22 O -0.154 6.154 23 C -0.065 4.065 24 C 0.558 3.442 25 F -0.165 7.165 26 F -0.176 7.176 27 F -0.128 7.128 28 H 0.265 0.735 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.176 0.824 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -6.988 6.129 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.068 0.932 15 C -0.011 4.011 16 N -0.337 5.337 17 C 0.352 3.648 18 O -0.423 6.423 19 C -0.145 4.145 20 C -0.193 4.193 21 C -0.073 4.073 22 O -0.049 6.049 23 C -0.119 4.119 24 C 0.503 3.497 25 F -0.146 7.146 26 F -0.157 7.157 27 F -0.109 7.109 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.256 0.744 38 H 0.194 0.806 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.395 -6.653 6.888 10.160 hybrid contribution -0.032 1.130 -0.341 1.181 sum 3.363 -5.523 6.546 9.201 Atomic orbital electron populations 1.69749 1.05523 1.26956 1.52209 1.25162 0.95172 0.97663 0.98473 0.86859 0.79357 0.84143 0.77822 1.21181 1.23087 1.19852 1.18279 0.81705 0.93756 1.43768 0.89754 1.44809 1.05331 1.33132 1.49569 1.21967 0.93172 0.92996 0.93272 1.22732 0.97956 0.99038 0.97181 1.22545 0.96343 1.00041 0.97252 1.21356 0.89836 0.94787 0.90344 0.93219 1.21973 0.83870 1.00861 0.94420 1.45974 1.13802 1.67399 1.06483 1.17203 0.86004 0.78494 0.83058 1.90836 1.40278 1.48584 1.62591 1.21573 0.96519 1.04668 0.91774 1.23177 0.90138 1.04226 1.01715 1.24206 0.99618 1.02502 0.80934 1.83709 1.19175 1.67189 1.34851 1.22035 0.84559 1.10805 0.94453 1.16701 0.79514 0.75216 0.78233 1.93259 1.96524 1.29327 1.95525 1.93218 1.90553 1.83546 1.48430 1.93425 1.36746 1.88953 1.91752 0.92502 0.92524 0.95794 0.91261 0.91701 0.91342 0.91256 0.92616 0.91777 0.74418 0.80646 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.97 55.49 0.78 -24.36 16 2 C 0.04 0.96 5.46 -17.43 -0.10 0.87 16 3 Si 0.89 22.10 24.37 -169.99 -4.14 17.96 16 4 H -0.29 -6.86 6.86 56.52 0.39 -6.48 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 7 C -0.25 -6.06 8.44 -15.06 -0.13 -6.19 16 8 H 0.09 2.09 6.74 -52.49 -0.35 1.74 16 9 N -0.60 -12.92 2.82 -162.57 -0.46 -13.38 16 10 C 0.11 2.23 4.79 -2.53 -0.01 2.22 16 11 C -0.13 -1.99 7.10 -24.52 -0.17 -2.17 16 12 C -0.12 -1.78 6.48 -24.83 -0.16 -1.95 16 13 C 0.14 2.52 3.41 -66.95 -0.23 2.29 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.11 2.08 5.26 -4.04 -0.02 2.06 16 16 N -0.68 -13.07 4.82 -61.39 -0.30 -13.37 16 17 C 0.57 11.30 7.76 -12.54 -0.10 11.20 16 18 O -0.54 -11.83 13.18 5.27 0.07 -11.76 16 19 C -0.14 -2.50 6.27 -103.28 -0.65 -3.15 16 20 C -0.17 -2.62 10.60 -37.45 -0.40 -3.02 16 21 C -0.01 -0.07 12.03 29.30 0.35 0.28 16 22 O -0.15 -2.24 10.51 7.66 0.08 -2.16 16 23 C -0.06 -1.09 6.70 -34.97 -0.23 -1.32 16 24 C 0.56 9.20 3.35 36.00 0.12 9.32 16 25 F -0.17 -2.83 17.30 2.25 0.04 -2.79 16 26 F -0.18 -2.59 17.29 2.25 0.04 -2.55 16 27 F -0.13 -2.30 13.48 2.25 0.03 -2.27 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.06 1.21 7.43 -51.93 -0.39 0.82 16 30 H 0.02 0.52 5.24 -51.93 -0.27 0.25 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.97 7.80 -51.93 -0.40 0.56 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.41 7.90 4.72 -40.82 -0.19 7.71 16 38 H 0.18 2.59 7.74 -52.48 -0.41 2.18 16 39 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -30.32 330.78 -4.75 -35.07 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.15 Total: 4.19 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.72 Total: 10.44 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.02 Total: -51.11 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.15 Total: -13.92 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.61 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.32 -4.75 -35.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027908521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.767 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds