Wall clock time and date at job start Sat Apr 11 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48506 * 109.47334 * 265.10875 * 3 2 1 5 5 H 1.48507 * 109.47482 * 25.10940 * 3 2 1 6 6 H 1.48497 * 109.47523 * 145.11140 * 3 2 1 7 7 C 1.38806 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00445 * 343.21235 * 7 2 1 9 9 N 1.36937 * 119.99922 * 163.20989 * 7 2 1 10 10 C 1.47423 * 125.65043 * 331.52773 * 9 7 2 11 11 C 1.54907 * 104.92947 * 204.09422 * 10 9 7 12 12 C 1.55272 * 101.53140 * 323.12621 * 11 10 9 13 13 C 1.47029 * 125.64981 * 151.55302 * 9 7 2 14 14 H 1.08995 * 109.88236 * 59.50053 * 13 9 7 15 15 C 1.53003 * 109.87940 * 298.33628 * 13 9 7 16 16 N 1.46502 * 109.47048 * 56.86812 * 15 13 9 17 17 C 1.34780 * 119.99919 * 185.94435 * 16 15 13 18 18 O 1.21612 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.47373 * 119.99936 * 179.97438 * 17 16 15 20 20 C 1.47022 * 127.19486 * 0.02562 * 19 17 16 21 21 C 1.34175 * 105.95367 * 179.97438 * 20 19 17 22 22 O 1.34212 * 109.12673 * 0.02562 * 21 20 19 23 23 C 1.33655 * 110.90839 * 359.76278 * 22 21 20 24 24 C 1.50698 * 125.80185 * 180.26540 * 23 22 21 25 25 F 1.39897 * 109.47126 * 270.13910 * 24 23 22 26 26 F 1.39902 * 109.47035 * 30.13988 * 24 23 22 27 27 F 1.39897 * 109.47151 * 150.13682 * 24 23 22 28 28 H 0.96998 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36797 * 322.98787 * 10 9 7 30 30 H 1.09002 * 110.36844 * 85.20047 * 10 9 7 31 31 H 1.09004 * 111.00681 * 81.12057 * 11 10 9 32 32 H 1.09000 * 111.00496 * 204.96599 * 11 10 9 33 33 H 1.09000 * 110.62347 * 277.00783 * 12 11 10 34 34 H 1.08997 * 110.76039 * 153.77769 * 12 11 10 35 35 H 1.09001 * 109.47151 * 176.86578 * 15 13 9 36 36 H 1.09001 * 109.47346 * 296.86839 * 15 13 9 37 37 H 0.96995 * 120.00289 * 5.94138 * 16 15 13 38 38 H 1.08003 * 127.01839 * 359.97438 * 20 19 17 39 39 H 1.07999 * 125.43290 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6011 1.9867 -1.3950 5 1 1.3998 2.6804 0.5941 6 1 3.4922 1.4723 0.8008 7 6 2.0102 -1.2021 0.0005 8 1 1.5048 -2.1174 0.2711 9 7 3.3358 -1.2275 -0.3420 10 6 4.0052 -0.2845 -1.2562 11 6 5.2402 -1.0533 -1.7886 12 6 5.6728 -1.8546 -0.5309 13 6 4.3271 -2.2002 0.1406 14 1 4.0223 -3.2091 -0.1375 15 6 4.4620 -2.0948 1.6610 16 7 3.1514 -2.2997 2.2829 17 6 3.0027 -2.1329 3.6121 18 8 3.9566 -1.8128 4.2952 19 6 1.6843 -2.3385 4.2376 20 6 0.4335 -2.7246 3.5683 21 6 -0.4961 -2.7908 4.5336 22 8 0.0699 -2.4834 5.7110 23 6 1.3704 -2.2148 5.5594 24 6 2.3269 -1.8373 6.6611 25 9 2.3354 -0.4469 6.8151 26 9 1.9197 -2.4367 7.8578 27 9 3.6134 -2.2781 6.3330 28 1 -0.4850 0.8400 0.0004 29 1 3.3414 -0.0172 -2.0784 30 1 4.3185 0.6093 -0.7166 31 1 4.9622 -1.7241 -2.6017 32 1 6.0236 -0.3641 -2.1035 33 1 6.2844 -1.2365 0.1264 34 1 6.2062 -2.7616 -0.8153 35 1 5.1563 -2.8555 2.0178 36 1 4.8387 -1.1065 1.9247 37 1 2.3907 -2.5553 1.7382 38 1 0.2919 -2.9159 2.5148 39 1 -1.5342 -3.0500 4.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027908521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:59 Heat of formation + Delta-G solvation = -152.660968 kcal Electronic energy + Delta-G solvation = -30011.109387 eV Core-core repulsion = 25313.083331 eV Total energy + Delta-G solvation = -4698.026056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.32920 -48.88647 -48.76939 -43.85123 -40.69362 -39.38200 -35.54793 -34.65965 -34.23867 -32.13329 -31.78389 -30.92071 -27.51092 -26.56455 -25.73433 -24.17337 -22.73002 -22.20535 -21.41707 -21.05478 -20.08008 -19.76331 -19.43205 -18.86098 -18.07517 -17.45138 -17.26405 -17.04671 -16.90826 -16.41231 -15.92543 -15.69750 -15.59814 -15.28862 -15.21859 -15.13802 -14.94345 -14.91274 -14.83925 -14.40134 -14.10619 -14.06568 -13.88550 -13.41525 -13.40087 -13.01964 -12.78524 -12.70850 -12.31087 -12.04165 -11.79123 -11.63652 -11.30889 -11.13323 -11.08425 -10.78315 -10.21750 -9.91627 -8.91912 -8.17882 -5.47787 -0.31759 0.73156 0.95904 1.24558 1.36537 1.41430 1.82245 2.05919 2.25897 2.39853 2.55310 3.09730 3.12536 3.18398 3.29953 3.51403 3.59990 3.87034 4.00844 4.11447 4.16932 4.30816 4.38584 4.46498 4.66567 4.68744 4.74985 4.81567 5.03393 5.03929 5.11431 5.16140 5.28889 5.49268 5.51127 5.60316 5.77466 6.11359 6.56406 6.77891 7.16575 7.55935 8.18514 9.00071 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.004557 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.757584 B = 6142.526716 C = 6898.801599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.011 4.011 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.320 1.320 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.099 3.901 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.065 0.935 15 C 0.115 3.885 16 N -0.685 5.685 17 C 0.560 3.440 18 O -0.568 6.568 19 C -0.165 4.165 20 C -0.197 4.197 21 C 0.027 3.973 22 O -0.148 6.148 23 C -0.075 4.075 24 C 0.560 3.440 25 F -0.172 7.172 26 F -0.165 7.165 27 F -0.139 7.139 28 H 0.259 0.741 29 H 0.039 0.961 30 H 0.007 0.993 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.176 0.824 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -8.547 5.630 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.249 1.249 6 H -0.211 1.211 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.035 3.965 14 H 0.083 0.917 15 C -0.010 4.010 16 N -0.337 5.337 17 C 0.346 3.654 18 O -0.451 6.451 19 C -0.170 4.170 20 C -0.216 4.216 21 C -0.039 4.039 22 O -0.043 6.043 23 C -0.129 4.129 24 C 0.505 3.495 25 F -0.153 7.153 26 F -0.146 7.146 27 F -0.120 7.120 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.255 0.745 38 H 0.193 0.807 39 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 4.072 -8.225 6.370 11.172 hybrid contribution -0.210 1.519 -0.171 1.543 sum 3.863 -6.707 6.199 9.916 Atomic orbital electron populations 1.69812 1.06195 1.26599 1.55702 1.25516 0.95510 0.99148 1.00595 0.86295 0.77727 0.82712 0.77765 1.20267 1.24888 1.21148 1.18385 0.83054 0.92980 1.39890 0.90198 1.45045 1.05186 1.33874 1.50385 1.22054 0.95039 0.93037 0.92415 1.22693 0.96011 0.99105 0.97684 1.22589 0.94619 1.01688 0.96397 1.21596 0.90745 0.94280 0.89897 0.91722 1.22011 0.83865 1.00173 0.94967 1.46021 1.14168 1.67121 1.06425 1.17561 0.86688 0.77961 0.83163 1.90808 1.41382 1.49807 1.63073 1.21601 0.96581 1.06158 0.92672 1.23249 0.89816 1.06127 1.02373 1.25173 1.00819 0.98688 0.79192 1.83749 1.18129 1.66679 1.35755 1.21962 0.85425 1.11452 0.94015 1.16669 0.79186 0.74943 0.78703 1.93241 1.96532 1.29927 1.95604 1.93235 1.90357 1.83272 1.47711 1.93397 1.37636 1.89034 1.91934 0.93195 0.94293 0.97508 0.89892 0.89119 0.91017 0.87442 0.90267 0.94350 0.74519 0.80684 0.71081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.16 13.97 21.65 0.30 -52.85 16 2 C -0.01 -0.59 5.46 84.86 0.46 -0.13 16 3 Si 0.92 46.47 24.37 68.60 1.67 48.14 16 4 H -0.28 -13.27 6.86 99.48 0.68 -12.58 16 5 H -0.32 -16.78 7.11 99.48 0.71 -16.08 16 6 H -0.29 -14.68 6.64 99.48 0.66 -14.02 16 7 C -0.21 -10.45 8.44 84.03 0.71 -9.74 16 8 H 0.08 3.96 6.74 -2.91 -0.02 3.94 16 9 N -0.62 -25.88 2.82 -668.26 -1.88 -27.76 16 10 C 0.10 3.86 4.79 86.85 0.42 4.28 16 11 C -0.12 -3.14 7.10 32.03 0.23 -2.92 16 12 C -0.11 -2.87 6.48 31.82 0.21 -2.67 16 13 C 0.14 4.61 3.41 45.34 0.15 4.76 16 14 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 15 C 0.12 4.05 5.26 86.38 0.45 4.51 16 16 N -0.69 -26.09 4.82 -466.40 -2.25 -28.34 16 17 C 0.56 22.54 7.76 86.65 0.67 23.21 16 18 O -0.57 -25.19 13.18 -4.07 -0.05 -25.25 16 19 C -0.17 -5.87 6.27 -18.99 -0.12 -5.99 16 20 C -0.20 -5.74 10.60 23.65 0.25 -5.49 16 21 C 0.03 0.61 12.03 66.89 0.80 1.41 16 22 O -0.15 -4.03 10.51 4.48 0.05 -3.98 16 23 C -0.07 -2.46 6.70 25.26 0.17 -2.29 16 24 C 0.56 18.40 3.35 71.24 0.24 18.64 16 25 F -0.17 -5.93 17.30 44.97 0.78 -5.15 16 26 F -0.16 -4.71 17.29 44.97 0.78 -3.93 16 27 F -0.14 -5.06 13.48 44.97 0.61 -4.46 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.04 1.64 7.43 -2.39 -0.02 1.62 16 30 H 0.01 0.31 5.24 -2.39 -0.01 0.30 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 37 H 0.41 15.72 4.72 -92.71 -0.44 15.28 16 38 H 0.18 5.08 7.74 -2.91 -0.02 5.05 16 39 H 0.27 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.56 330.78 5.26 -62.30 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.61 Total: 13.68 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 4.65 Total: 27.60 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.83 Total: -108.96 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.01 Total: -29.23 kcal Atomic # 9 Polarization: -15.70 SS G_CDS: 2.16 Total: -13.54 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Total: -67.56 5.26 -62.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027908521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.358 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds