Wall clock time and date at job start Sat Apr 11 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39627 * 119.65302 * 331.49745 * 3 2 1 5 5 C 1.38191 * 119.14631 * 179.97438 * 4 3 2 6 6 C 1.39471 * 118.44728 * 0.02562 * 5 4 3 7 7 N 1.39232 * 120.38857 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00321 * 180.02562 * 7 6 5 9 9 H 1.09005 * 112.85161 * 336.19696 * 8 7 6 10 10 C 1.53783 * 113.61585 * 107.50097 * 8 7 6 11 11 C 1.53787 * 87.08027 * 139.98258 * 10 8 7 12 12 H 1.09003 * 113.68833 * 89.12598 * 11 10 8 13 13 N 1.46497 * 113.61533 * 220.02327 * 11 10 8 14 14 C 1.34780 * 119.99566 * 252.50025 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.53782 * 113.61521 * 205.00167 * 8 7 6 27 27 C 1.39333 * 119.22325 * 0.27274 * 6 5 4 28 28 N 1.31417 * 120.78908 * 359.44785 * 27 6 5 29 29 H 1.08003 * 120.42771 * 0.02739 * 4 3 2 30 30 H 1.07995 * 120.77813 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99704 * 0.02562 * 7 6 5 32 32 H 1.08994 * 113.61317 * 25.43943 * 10 8 7 33 33 H 1.08991 * 113.61491 * 254.53130 * 10 8 7 34 34 H 0.96995 * 120.00423 * 72.49331 * 13 11 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 38 38 H 1.09004 * 113.61426 * 105.47113 * 26 8 7 39 39 H 1.08993 * 113.69233 * 334.57562 * 26 8 7 40 40 H 1.08001 * 119.59764 * 179.70105 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2593 -1.0654 0.5790 5 6 4.6411 -1.0543 0.5727 6 6 5.2941 0.0288 -0.0152 7 7 6.6851 0.0817 -0.0436 8 6 7.3623 1.2236 -0.6628 9 1 6.7431 1.7336 -1.4008 10 6 8.0226 2.1724 0.3514 11 6 9.1968 2.2832 -0.6354 12 1 9.0809 3.0840 -1.3659 13 7 10.5101 2.2909 0.0137 14 6 11.2262 3.4312 0.0720 15 8 10.7837 4.4508 -0.4132 16 6 12.5775 3.4390 0.7392 17 16 13.2824 5.1040 0.6548 18 6 14.8132 4.8305 1.4832 19 1 15.0556 3.8475 1.8593 20 6 15.7072 5.8786 1.6535 21 7 15.4115 7.0767 1.1956 22 14 17.3298 5.5888 2.5324 23 1 17.4205 4.1659 2.9479 24 1 18.4534 5.9099 1.6161 25 1 17.4053 6.4601 3.7325 26 6 8.7796 0.9011 -1.1651 27 6 4.5382 1.0603 -0.5683 28 7 3.2249 1.0161 -0.5503 29 1 2.7209 -1.8885 1.0253 30 1 5.2023 -1.8653 1.0128 31 1 7.2059 -0.6376 0.3467 32 1 8.2871 1.6901 1.2924 33 1 7.4804 3.1074 0.4917 34 1 10.8643 1.4754 0.4015 35 1 12.4693 3.1423 1.7824 36 1 13.2387 2.7386 0.2289 37 1 16.0364 7.8091 1.3142 38 1 8.8485 0.8099 -2.2491 39 1 9.2522 0.0713 -0.6396 40 1 5.0376 1.9042 -1.0208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097151908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:32 Heat of formation + Delta-G solvation = 56.112603 kcal Electronic energy + Delta-G solvation = -23331.872391 eV Core-core repulsion = 19659.801799 eV Total energy + Delta-G solvation = -3672.070592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06712 -40.10049 -38.48020 -36.90048 -35.47863 -33.29054 -32.62269 -32.47463 -30.23565 -29.08527 -26.21004 -25.59638 -25.12431 -24.72940 -22.89027 -20.58244 -20.37510 -19.89293 -18.10935 -17.82369 -17.44249 -16.49410 -16.18653 -15.70993 -15.30312 -15.23310 -14.93891 -14.85421 -14.77676 -14.22258 -14.02509 -13.85113 -13.56858 -13.24427 -13.06659 -13.06371 -12.97260 -12.77839 -12.63998 -12.20549 -11.79212 -11.49880 -11.44256 -11.10997 -11.06879 -10.84075 -10.78550 -10.19883 -10.15234 -9.85544 -9.49585 -9.12772 -9.01958 -8.29171 -8.16447 -6.55560 -6.26555 -3.97470 0.31253 0.71874 2.24861 2.49056 2.56817 2.94885 3.00266 3.17991 3.24867 3.28558 3.31407 3.51586 3.64913 3.95978 4.06403 4.09535 4.15629 4.19363 4.42483 4.46775 4.50521 4.59487 4.98187 4.98950 5.09006 5.10561 5.21148 5.24932 5.33511 5.42078 5.47288 5.54319 5.65232 5.78019 5.80961 5.92551 6.06170 6.48983 6.50950 6.89112 7.08896 7.38790 7.54852 7.57905 8.30447 8.49701 9.19069 10.80910 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.001566 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.756784 B =17874.485794 C =18053.114376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.277 3.723 3 C 0.110 3.890 4 C -0.062 4.062 5 C -0.163 4.163 6 C 0.201 3.799 7 N -0.711 5.711 8 C 0.121 3.879 9 H 0.117 0.883 10 C -0.168 4.168 11 C 0.130 3.870 12 H 0.120 0.880 13 N -0.728 5.728 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.155 4.155 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.152 4.152 27 C 0.037 3.963 28 N -0.407 5.407 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.406 0.594 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.628 -20.704 -2.212 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.040 4.040 3 C -0.029 4.029 4 C -0.085 4.085 5 C -0.193 4.193 6 C 0.091 3.909 7 N -0.336 5.336 8 C 0.015 3.985 9 H 0.135 0.865 10 C -0.208 4.208 11 C 0.023 3.977 12 H 0.138 0.862 13 N -0.381 5.381 14 C 0.320 3.680 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.191 4.191 27 C -0.130 4.130 28 N -0.116 5.116 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.433 -17.953 -3.512 27.426 hybrid contribution 2.950 -2.695 1.897 4.423 sum -17.483 -20.649 -1.616 27.104 Atomic orbital electron populations 1.81250 1.11707 1.07363 1.08466 1.25010 0.91691 0.93661 0.93615 1.16061 0.85948 0.94721 1.06169 1.21724 0.93991 0.97301 0.95514 1.20976 0.94010 0.99313 1.05022 1.19163 0.85317 0.94215 0.92249 1.44721 1.02011 1.24432 1.62438 1.22478 0.92486 0.87395 0.96105 0.86532 1.24080 0.97368 1.00453 0.98910 1.22143 0.82236 0.97759 0.95563 0.86181 1.45921 1.18940 1.12420 1.60817 1.20370 0.86069 0.82851 0.78736 1.90706 1.70771 1.32098 1.45268 1.23542 0.95733 1.08457 1.02797 1.85416 1.19505 1.02140 1.76274 1.22902 1.03766 0.98796 1.43001 0.90879 1.24992 0.98649 0.94424 0.95480 1.70023 1.36226 1.00539 1.43418 0.86117 0.81857 0.78408 0.79111 1.19631 1.20537 1.20547 1.23751 0.94607 0.98145 1.02593 1.22410 0.88120 0.99146 1.03359 1.67322 1.09604 1.23014 1.11658 0.83863 0.83858 0.75768 0.89121 0.90070 0.76729 0.89228 0.89193 0.92187 0.89665 0.89011 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.81 18.54 41.84 0.78 -4.03 16 2 C 0.28 2.68 15.53 -22.47 -0.35 2.33 16 3 C 0.11 0.86 6.59 -84.97 -0.56 0.30 16 4 C -0.06 -0.30 9.78 -39.08 -0.38 -0.68 16 5 C -0.16 -0.63 10.03 -39.14 -0.39 -1.02 16 6 C 0.20 0.97 6.68 -83.63 -0.56 0.41 16 7 N -0.71 -2.38 5.52 -51.24 -0.28 -2.67 16 8 C 0.12 0.51 4.05 -67.12 -0.27 0.24 16 9 H 0.12 0.42 6.15 -51.93 -0.32 0.10 16 10 C -0.17 -1.11 7.68 -25.91 -0.20 -1.31 16 11 C 0.13 1.08 4.24 -67.11 -0.28 0.79 16 12 H 0.12 1.23 7.46 -51.93 -0.39 0.85 16 13 N -0.73 -7.77 5.35 -53.01 -0.28 -8.05 16 14 C 0.53 8.92 7.85 -10.98 -0.09 8.83 16 15 O -0.51 -10.77 15.46 5.56 0.09 -10.68 16 16 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 22 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.15 -0.69 7.58 -25.92 -0.20 -0.89 16 27 C 0.04 0.24 10.43 -17.32 -0.18 0.06 16 28 N -0.41 -3.57 10.26 -10.92 -0.11 -3.69 16 29 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 30 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 31 H 0.41 0.72 8.75 -40.82 -0.36 0.37 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 3.08 8.73 -40.82 -0.36 2.72 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 40 H 0.17 0.83 6.06 -52.49 -0.32 0.52 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -36.17 369.56 -8.45 -44.62 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.66 Total: -2.06 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.04 Total: -6.21 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.83 Total: -43.33 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.17 -8.45 -44.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097151908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.737 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds