Wall clock time and date at job start Sat Apr 11 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39627 * 119.65302 * 331.49745 * 3 2 1 5 5 C 1.38191 * 119.14631 * 179.97438 * 4 3 2 6 6 C 1.39471 * 118.44728 * 0.02562 * 5 4 3 7 7 N 1.39232 * 120.38857 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00321 * 180.02562 * 7 6 5 9 9 H 1.09005 * 112.85161 * 336.19696 * 8 7 6 10 10 C 1.53783 * 113.61585 * 107.50097 * 8 7 6 11 11 C 1.53787 * 87.08027 * 139.98258 * 10 8 7 12 12 H 1.09003 * 113.68833 * 89.12598 * 11 10 8 13 13 N 1.46497 * 113.61533 * 220.02327 * 11 10 8 14 14 C 1.34780 * 119.99566 * 252.50025 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.53782 * 113.61521 * 205.00167 * 8 7 6 27 27 C 1.39333 * 119.22325 * 0.27274 * 6 5 4 28 28 N 1.31417 * 120.78908 * 359.44785 * 27 6 5 29 29 H 1.08003 * 120.42771 * 0.02739 * 4 3 2 30 30 H 1.07995 * 120.77813 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99704 * 0.02562 * 7 6 5 32 32 H 1.08994 * 113.61317 * 25.43943 * 10 8 7 33 33 H 1.08991 * 113.61491 * 254.53130 * 10 8 7 34 34 H 0.96995 * 120.00423 * 72.49331 * 13 11 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 38 38 H 1.09004 * 113.61426 * 105.47113 * 26 8 7 39 39 H 1.08993 * 113.69233 * 334.57562 * 26 8 7 40 40 H 1.08001 * 119.59764 * 179.70105 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2593 -1.0654 0.5790 5 6 4.6411 -1.0543 0.5727 6 6 5.2941 0.0288 -0.0152 7 7 6.6851 0.0817 -0.0436 8 6 7.3623 1.2236 -0.6628 9 1 6.7431 1.7336 -1.4008 10 6 8.0226 2.1724 0.3514 11 6 9.1968 2.2832 -0.6354 12 1 9.0809 3.0840 -1.3659 13 7 10.5101 2.2909 0.0137 14 6 11.2262 3.4312 0.0720 15 8 10.7837 4.4508 -0.4132 16 6 12.5775 3.4390 0.7392 17 16 13.2824 5.1040 0.6548 18 6 14.8132 4.8305 1.4832 19 1 15.0556 3.8475 1.8593 20 6 15.7072 5.8786 1.6535 21 7 15.4115 7.0767 1.1956 22 14 17.3298 5.5888 2.5324 23 1 17.4205 4.1659 2.9479 24 1 18.4534 5.9099 1.6161 25 1 17.4053 6.4601 3.7325 26 6 8.7796 0.9011 -1.1651 27 6 4.5382 1.0603 -0.5683 28 7 3.2249 1.0161 -0.5503 29 1 2.7209 -1.8885 1.0253 30 1 5.2023 -1.8653 1.0128 31 1 7.2059 -0.6376 0.3467 32 1 8.2871 1.6901 1.2924 33 1 7.4804 3.1074 0.4917 34 1 10.8643 1.4754 0.4015 35 1 12.4693 3.1423 1.7824 36 1 13.2387 2.7386 0.2289 37 1 16.0364 7.8091 1.3142 38 1 8.8485 0.8099 -2.2491 39 1 9.2522 0.0713 -0.6396 40 1 5.0376 1.9042 -1.0208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097151908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:32 Heat of formation + Delta-G solvation = 29.426452 kcal Electronic energy + Delta-G solvation = -23333.029589 eV Core-core repulsion = 19659.801799 eV Total energy + Delta-G solvation = -3673.227790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55127 -40.90235 -39.45786 -37.64086 -36.09551 -34.57739 -34.20753 -33.11786 -31.00245 -30.18953 -27.66908 -26.68236 -25.71894 -25.20891 -23.48050 -21.70608 -20.98808 -20.40111 -19.76575 -18.47186 -18.07043 -17.69201 -16.92084 -16.86424 -16.40921 -16.28408 -15.95631 -15.78439 -15.70212 -15.16009 -14.74508 -14.59712 -14.54344 -14.32786 -14.09172 -13.87019 -13.73844 -13.43655 -13.36262 -13.28260 -13.14514 -12.91042 -12.64141 -12.37784 -12.14263 -11.99968 -11.67670 -11.31522 -11.14937 -10.86982 -10.61402 -10.58547 -10.24612 -9.98970 -8.64921 -8.55560 -8.33859 -6.11376 -0.16299 0.34857 1.29319 1.42233 1.49324 1.54660 1.59594 1.64334 1.88746 2.14382 2.28436 2.49818 2.75923 2.99562 3.00759 3.34362 3.47751 3.60022 3.69987 3.81775 3.93316 3.99689 4.05696 4.12153 4.20928 4.34591 4.54119 4.56916 4.66774 4.77857 4.79033 4.93315 5.00309 5.09403 5.10692 5.19395 5.43301 5.46207 5.62511 6.10100 6.20984 6.40151 6.57156 6.66914 6.94124 7.08004 7.31330 8.75502 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.001566 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.756784 B =17874.485794 C =18053.114376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.296 3.704 3 C 0.080 3.920 4 C -0.051 4.051 5 C -0.154 4.154 6 C 0.208 3.792 7 N -0.696 5.696 8 C 0.133 3.867 9 H 0.123 0.877 10 C -0.165 4.165 11 C 0.110 3.890 12 H 0.095 0.905 13 N -0.699 5.699 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.130 4.130 27 C 0.023 3.977 28 N -0.440 5.440 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.419 0.581 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.418 0.582 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -24.524 -1.149 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.020 4.020 3 C -0.058 4.058 4 C -0.074 4.074 5 C -0.184 4.184 6 C 0.096 3.904 7 N -0.322 5.322 8 C 0.027 3.973 9 H 0.140 0.860 10 C -0.206 4.206 11 C 0.004 3.996 12 H 0.113 0.887 13 N -0.352 5.352 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.169 4.169 27 C -0.145 4.145 28 N -0.150 5.150 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.258 0.742 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.172 -21.861 -2.438 29.179 hybrid contribution 2.536 -1.583 1.547 3.366 sum -16.635 -23.443 -0.891 28.760 Atomic orbital electron populations 1.81246 1.13071 1.09055 1.10509 1.25427 0.92148 0.92245 0.92164 1.16181 0.84979 0.96190 1.08447 1.21977 0.94581 0.96677 0.94137 1.21333 0.93589 0.99559 1.03909 1.19188 0.85745 0.93932 0.91505 1.44601 1.01461 1.24278 1.61822 1.22303 0.92709 0.87131 0.95172 0.85950 1.24058 0.96524 1.00582 0.99394 1.22391 0.81197 0.99892 0.96115 0.88669 1.45655 1.19064 1.11127 1.59379 1.20071 0.85727 0.83786 0.78426 1.90697 1.71714 1.34323 1.47750 1.23391 0.96929 1.03198 1.04679 1.85604 1.20816 1.09579 1.76792 1.23245 1.03933 0.99349 1.42773 0.89843 1.26110 1.02840 0.93984 0.96183 1.70190 1.37854 1.01717 1.45065 0.84920 0.76424 0.79058 0.77639 1.17899 1.20026 1.20092 1.23662 0.93933 0.95984 1.03297 1.22581 0.87678 1.00179 1.04041 1.67202 1.10881 1.24089 1.12827 0.81458 0.80444 0.74197 0.88375 0.91783 0.74473 0.87265 0.87156 0.92045 0.88847 0.86574 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.24 18.54 19.00 0.35 -10.89 16 2 C 0.30 5.84 15.53 88.33 1.37 7.21 16 3 C 0.08 1.21 6.59 40.57 0.27 1.47 16 4 C -0.05 -0.36 9.78 22.59 0.22 -0.14 16 5 C -0.15 -0.58 10.03 22.56 0.23 -0.36 16 6 C 0.21 1.33 6.68 38.53 0.26 1.59 16 7 N -0.70 -1.78 5.52 -316.02 -1.74 -3.52 16 8 C 0.13 0.71 4.05 45.52 0.18 0.89 16 9 H 0.12 0.60 6.15 -2.38 -0.01 0.58 16 10 C -0.17 -1.85 7.68 31.12 0.24 -1.61 16 11 C 0.11 1.63 4.24 45.52 0.19 1.82 16 12 H 0.10 1.96 7.46 -2.39 -0.02 1.95 16 13 N -0.70 -13.36 5.35 -440.02 -2.36 -15.72 16 14 C 0.53 17.54 7.85 87.66 0.69 18.23 16 15 O -0.57 -24.42 15.46 -3.03 -0.05 -24.46 16 16 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 17 S -0.16 -8.33 20.57 -56.49 -1.16 -9.49 16 18 C -0.55 -30.27 9.50 67.96 0.65 -29.62 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.15 13.22 21.65 0.29 -54.86 16 22 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 26 C -0.13 -0.68 7.58 31.12 0.24 -0.45 16 27 C 0.02 0.27 10.43 85.02 0.89 1.15 16 28 N -0.44 -7.59 10.26 -188.45 -1.93 -9.53 16 29 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 30 H 0.18 -0.52 8.06 -2.91 -0.02 -0.55 16 31 H 0.42 -0.76 8.75 -92.71 -0.81 -1.57 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.42 4.85 8.73 -92.71 -0.81 4.04 16 35 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 37 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.12 0.12 8.10 -2.39 -0.02 0.10 16 40 H 0.17 1.56 6.06 -2.91 -0.02 1.55 16 Total: -1.00 -84.44 369.56 1.24 -83.21 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -0.51 Total: 3.63 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 6.32 Total: -2.91 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.40 Total: -94.52 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -84.44 1.24 -83.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097151908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.634 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds