Wall clock time and date at job start Sat Apr 11 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46740 * 2 1 4 4 C 1.50697 * 109.47167 * 240.00765 * 2 1 3 5 5 H 1.08004 * 119.99686 * 240.00033 * 4 2 1 6 6 C 1.37873 * 120.00473 * 59.99584 * 4 2 1 7 7 N 1.31513 * 120.00121 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46969 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47098 * 119.99828 * 8 6 4 11 11 H 1.48502 * 109.47044 * 240.00216 * 8 6 4 12 12 S 1.81396 * 109.47238 * 120.00297 * 2 1 3 13 13 C 1.76201 * 102.99768 * 286.11463 * 12 2 1 14 14 C 1.38782 * 120.10721 * 0.14304 * 13 12 2 15 15 C 1.38200 * 119.99094 * 180.27593 * 14 13 12 16 16 C 1.38301 * 120.19622 * 359.74886 * 15 14 13 17 17 C 1.38253 * 120.21156 * 359.97438 * 16 15 14 18 18 C 1.38645 * 120.00793 * 0.02562 * 17 16 15 19 19 N 1.40139 * 120.09787 * 180.02562 * 18 17 16 20 20 C 1.34776 * 120.00033 * 33.75805 * 19 18 17 21 21 O 1.21298 * 119.99990 * 354.74713 * 20 19 18 22 22 C 1.50701 * 119.99896 * 174.74620 * 20 19 18 23 23 N 1.46503 * 109.47007 * 179.97438 * 22 20 19 24 24 C 1.34427 * 126.82022 * 124.99664 * 23 22 20 25 25 N 1.30828 * 108.07897 * 179.97438 * 24 23 22 26 26 C 1.33248 * 109.82665 * 0.02562 * 25 24 23 27 27 N 1.30710 * 108.94588 * 359.75203 * 26 25 24 28 28 H 1.08993 * 109.47398 * 304.12600 * 1 2 3 29 29 H 1.09006 * 109.47277 * 64.12877 * 1 2 3 30 30 H 1.09004 * 109.47115 * 184.12318 * 1 2 3 31 31 H 0.97002 * 120.00094 * 179.97438 * 7 6 4 32 32 H 1.08000 * 120.00908 * 0.02562 * 14 13 12 33 33 H 1.07997 * 119.90549 * 179.76536 * 15 14 13 34 34 H 1.08005 * 119.89520 * 179.97438 * 16 15 14 35 35 H 1.07997 * 119.99216 * 180.02562 * 17 16 15 36 36 H 0.97003 * 119.99928 * 213.75618 * 19 18 17 37 37 H 1.08994 * 109.47203 * 59.99907 * 22 20 19 38 38 H 1.08998 * 109.46986 * 300.00015 * 22 20 19 39 39 H 1.08003 * 125.96266 * 0.02562 * 24 23 22 40 40 H 1.07997 * 125.52278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 16 2.1347 -0.8552 1.4810 13 6 1.8175 0.3069 2.7669 14 6 1.2289 1.5286 2.4716 15 6 0.9864 2.4406 3.4813 16 6 1.3240 2.1379 4.7879 17 6 1.9055 0.9211 5.0922 18 6 2.1526 -0.0002 4.0860 19 7 2.7415 -1.2344 4.3924 20 6 2.4731 -1.8357 5.5684 21 8 1.7990 -1.2664 6.4007 22 6 3.0106 -3.2153 5.8491 23 7 2.5832 -3.6437 7.1834 24 6 1.9167 -4.7692 7.4931 25 7 1.7243 -4.7841 8.7871 26 6 2.2510 -3.6896 9.3349 27 7 2.7929 -2.9625 8.3935 28 1 -0.3634 0.5765 0.8506 29 1 -0.3634 0.4484 -0.9247 30 1 -0.3633 -1.0250 0.0739 31 1 0.7095 1.1620 -3.4844 32 1 0.9640 1.7682 1.4524 33 1 0.5317 3.3923 3.2494 34 1 1.1327 2.8545 5.5730 35 1 2.1673 0.6883 6.1137 36 1 3.3423 -1.6559 3.7581 37 1 4.0995 -3.1970 5.8053 38 1 2.6286 -3.9127 5.1035 39 1 1.5966 -5.5291 6.7956 40 1 2.2361 -3.4449 10.3867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066800721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:42 Heat of formation + Delta-G solvation = 91.642328 kcal Electronic energy + Delta-G solvation = -24889.340370 eV Core-core repulsion = 21218.810462 eV Total energy + Delta-G solvation = -3670.529907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27351 -40.44554 -38.26820 -34.91257 -34.30310 -34.19666 -31.39163 -31.18864 -30.12590 -29.92358 -27.86876 -25.47238 -23.38676 -22.71778 -22.18751 -22.07365 -21.30763 -20.43791 -18.32974 -17.63797 -17.28901 -16.66423 -16.21386 -16.04024 -15.36413 -15.31645 -15.13987 -14.55720 -14.38385 -14.32801 -13.87329 -13.72412 -13.41120 -13.23336 -12.80271 -12.59463 -12.10737 -12.02613 -11.83165 -11.42528 -11.16287 -11.11522 -10.69291 -10.62356 -10.48666 -10.30476 -10.22856 -10.07596 -9.95296 -9.68624 -9.52748 -9.22000 -9.06981 -8.60847 -8.14729 -6.68801 -6.31654 -4.41602 1.36428 1.42418 1.62943 1.90187 2.32027 2.38421 2.79272 2.91486 3.13922 3.22547 3.26116 3.49293 3.99992 4.09117 4.14160 4.21001 4.34734 4.58423 4.65497 5.00712 5.02732 5.21162 5.28091 5.49633 5.71079 5.75193 5.96477 6.11925 6.22104 6.38244 6.44025 6.46888 6.50471 6.63027 6.64286 6.70320 6.79617 7.18118 7.22065 7.26832 7.50444 7.66843 7.85847 7.91215 7.91660 8.57637 9.23421 10.74198 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002850 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.755183 B = 9820.605633 C =11156.623005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 H 0.053 0.947 4 C -0.512 4.512 5 H 0.068 0.932 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.173 6.173 13 C -0.085 4.085 14 C -0.119 4.119 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.107 4.107 18 C 0.141 3.859 19 N -0.657 5.657 20 C 0.500 3.500 21 O -0.497 6.497 22 C 0.113 3.887 23 N -0.370 5.370 24 C 0.257 3.743 25 N -0.545 5.545 26 C 0.192 3.808 27 N -0.291 5.291 28 H 0.020 0.980 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.414 0.586 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.220 0.780 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -5.700 14.588 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.551 4.551 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.075 5.925 13 C -0.200 4.200 14 C -0.144 4.144 15 C -0.133 4.133 16 C -0.148 4.148 17 C -0.128 4.128 18 C 0.041 3.959 19 N -0.303 5.303 20 C 0.285 3.715 21 O -0.369 6.369 22 C -0.014 4.014 23 N -0.161 5.161 24 C -0.039 4.039 25 N -0.272 5.272 26 C -0.111 4.111 27 N -0.117 5.117 28 H 0.039 0.961 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.251 0.749 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.237 0.763 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.720 -5.964 15.256 16.797 hybrid contribution -0.100 0.620 -1.582 1.702 sum 3.619 -5.344 13.674 15.121 Atomic orbital electron populations 1.22148 0.96225 1.00164 1.01878 1.21111 0.95676 0.97361 0.88533 0.92960 1.20666 1.32607 1.13312 0.88559 0.91416 1.24897 0.94610 0.94940 0.98921 1.69858 1.35741 1.22449 1.24173 0.86294 0.78738 0.79623 0.82004 1.19471 1.20670 1.20679 1.84953 1.78089 1.27049 1.02455 1.21825 1.02688 0.99564 0.95914 1.21364 0.99630 0.92661 1.00743 1.21072 1.00274 0.99226 0.92721 1.20953 1.00783 0.96619 0.96412 1.21132 1.00209 0.92332 0.99147 1.17107 1.00995 0.85757 0.92006 1.43298 1.47308 1.20446 1.19284 1.20474 0.81315 0.87613 0.82130 1.90783 1.37034 1.64516 1.44606 1.21566 1.02897 0.95868 0.81060 1.49965 1.43054 1.16572 1.06513 1.26118 0.93221 0.90490 0.94108 1.70539 1.26143 1.24533 1.06018 1.26018 0.95604 0.88890 1.00588 1.78181 1.24553 1.19298 0.89696 0.96067 0.88469 0.94190 0.92362 0.84208 0.86072 0.86142 0.84421 0.74875 0.85947 0.84500 0.76339 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.64 37.16 0.32 -2.93 16 2 C 0.10 2.32 1.97 -27.88 -0.05 2.26 16 3 H 0.05 1.30 6.88 -51.92 -0.36 0.94 16 4 C -0.51 -12.96 8.58 -34.44 -0.30 -13.25 16 5 H 0.07 1.72 7.71 -52.48 -0.40 1.31 16 6 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 7 N -0.88 -23.17 11.30 55.43 0.63 -22.55 16 8 Si 0.91 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 S -0.17 -3.34 20.07 -107.50 -2.16 -5.50 16 13 C -0.08 -1.52 6.12 -38.90 -0.24 -1.76 16 14 C -0.12 -2.13 8.27 -39.39 -0.33 -2.45 16 15 C -0.11 -1.72 10.04 -39.57 -0.40 -2.12 16 16 C -0.13 -1.85 10.04 -39.55 -0.40 -2.24 16 17 C -0.11 -1.70 8.71 -39.43 -0.34 -2.04 16 18 C 0.14 2.29 6.34 -83.43 -0.53 1.76 16 19 N -0.66 -8.50 5.04 -9.71 -0.05 -8.55 16 20 C 0.50 6.23 7.72 -10.99 -0.08 6.14 16 21 O -0.50 -8.18 13.10 5.54 0.07 -8.11 16 22 C 0.11 0.88 7.03 -5.19 -0.04 0.84 16 23 N -0.37 -3.87 3.40 -63.81 -0.22 -4.08 16 24 C 0.26 2.35 12.63 -90.66 -1.14 1.20 16 25 N -0.55 -6.25 11.19 -15.83 -0.18 -6.43 16 26 C 0.19 2.17 13.03 -91.81 -1.20 0.97 16 27 N -0.29 -3.77 11.83 29.29 0.35 -3.43 16 28 H 0.02 0.43 6.05 -51.93 -0.31 0.11 16 29 H 0.10 2.39 5.97 -51.93 -0.31 2.08 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.14 2.67 4.64 -52.49 -0.24 2.42 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.14 2.22 6.10 -52.49 -0.32 1.90 16 36 H 0.41 4.51 7.93 -40.82 -0.32 4.18 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.14 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.22 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -32.92 351.38 -10.46 -43.38 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.37 Total: 7.12 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -4.82 Total: -11.90 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.53 Total: -45.04 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.16 Total: -5.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.92 -10.46 -43.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066800721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.025 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds