Wall clock time and date at job start Sat Apr 11 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30682 * 125.85191 * 2 1 4 4 C 1.33980 * 109.78128 * 179.97438 * 3 2 1 5 5 C 1.48409 * 125.65329 * 179.97438 * 4 3 2 6 6 C 1.39388 * 120.08436 * 359.97438 * 5 4 3 7 7 C 1.38048 * 120.02097 * 180.02562 * 6 5 4 8 8 C 1.38213 * 120.19378 * 359.72511 * 7 6 5 9 9 C 1.50699 * 119.91411 * 180.27214 * 8 7 6 10 10 C 1.38926 * 120.17232 * 0.55477 * 8 7 6 11 11 N 1.39933 * 120.01435 * 179.71991 * 10 8 7 12 12 C 1.34770 * 120.00387 * 154.87122 * 11 10 8 13 13 O 1.21288 * 120.00101 * 354.47614 * 12 11 10 14 14 C 1.50697 * 120.00204 * 174.48275 * 12 11 10 15 15 S 1.81005 * 109.47231 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00086 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99840 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99794 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00239 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99742 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47041 * 60.00762 * 20 18 16 22 22 H 1.48501 * 109.47152 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47514 * 300.00664 * 20 18 16 24 24 C 1.38688 * 119.97577 * 359.44309 * 10 8 7 25 25 N 1.31499 * 108.69681 * 0.25759 * 4 3 2 26 26 N 1.34525 * 125.85900 * 179.97438 * 2 1 3 27 27 H 0.97000 * 126.73559 * 0.02562 * 26 2 1 28 28 H 1.08994 * 109.47217 * 90.03090 * 1 2 3 29 29 H 1.09002 * 109.46650 * 210.02811 * 1 2 3 30 30 H 1.09001 * 109.47431 * 330.02685 * 1 2 3 31 31 H 1.08004 * 119.99284 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.89952 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47474 * 270.27686 * 9 8 7 34 34 H 1.09000 * 109.46928 * 30.28106 * 9 8 7 35 35 H 1.09003 * 109.46923 * 150.27971 * 9 8 7 36 36 H 0.97005 * 120.00080 * 334.86386 * 11 10 8 37 37 H 1.09005 * 109.46976 * 299.99382 * 14 12 11 38 38 H 1.08995 * 109.47883 * 59.99624 * 14 12 11 39 39 H 0.97006 * 119.99942 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.09725 * 180.29792 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2724 1.0592 0.0000 4 6 3.5598 0.6883 0.0006 5 6 4.7249 1.6077 0.0002 6 6 4.5263 2.9873 -0.0013 7 6 5.6109 3.8413 -0.0022 8 6 6.8961 3.3326 0.0042 9 6 8.0755 4.2706 0.0094 10 6 7.1033 1.9589 -0.0001 11 7 8.4059 1.4476 0.0005 12 6 8.6462 0.2160 0.4923 13 8 7.7538 -0.4090 1.0252 14 6 10.0238 -0.3845 0.3804 15 16 10.0263 -2.0326 1.1286 16 6 11.7082 -2.4863 0.8641 17 1 12.3799 -1.8028 0.3660 18 6 12.1700 -3.7216 1.2968 19 7 11.3514 -4.5544 1.9042 20 14 13.9529 -4.2029 1.0157 21 1 14.8421 -3.2285 1.6978 22 1 14.1917 -5.5612 1.5662 23 1 14.2424 -4.2016 -0.4408 24 6 6.0188 1.0945 0.0008 25 7 3.6201 -0.6253 -0.0047 26 7 2.2950 -1.0903 0.0005 27 1 2.0048 -2.0159 0.0006 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 3.5235 3.3884 -0.0019 32 1 5.4548 4.9099 -0.0038 33 1 8.3618 4.5002 -1.0170 34 1 7.8050 5.1916 0.5259 35 1 8.9130 3.7984 0.5231 36 1 9.1359 1.9794 -0.3533 37 1 10.3021 -0.4619 -0.6707 38 1 10.7407 0.2511 0.9001 39 1 11.6742 -5.4179 2.2063 40 1 6.1777 0.0263 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267233003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:13 Heat of formation + Delta-G solvation = 72.222724 kcal Electronic energy + Delta-G solvation = -24426.595831 eV Core-core repulsion = 20755.223826 eV Total energy + Delta-G solvation = -3671.372005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20120 -40.44211 -38.34841 -34.98262 -33.59806 -32.56825 -32.45036 -31.96455 -30.61871 -28.81167 -28.06725 -26.97159 -25.50467 -23.36466 -22.51527 -21.32075 -20.53427 -20.10979 -18.16145 -17.90714 -17.05308 -16.51037 -15.89778 -15.66402 -15.35545 -14.83964 -14.81713 -14.47946 -14.17849 -13.92213 -13.88729 -13.44607 -13.35691 -13.28135 -13.09587 -12.63240 -12.51022 -12.39463 -12.01387 -11.98302 -11.49744 -11.47086 -11.06298 -11.05280 -10.80252 -10.67491 -10.18996 -10.16263 -9.86149 -9.76932 -9.38020 -9.07825 -8.47708 -8.28104 -7.90493 -6.53207 -6.23528 -3.94800 0.82951 1.42796 1.63966 2.47456 2.73587 2.91295 3.06230 3.22468 3.25611 3.28575 3.57390 3.73252 3.94495 4.17919 4.35152 4.53792 4.77629 4.86629 4.97337 5.01139 5.10340 5.11652 5.19231 5.37016 5.41954 5.44650 5.47935 5.54497 5.71570 5.80500 5.84181 5.91136 6.06531 6.10231 6.16669 6.34958 6.45477 6.54315 6.59583 6.90625 7.07478 7.52698 7.57472 7.93667 8.32819 8.41519 9.21582 10.83788 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002733 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.127892 B =10241.724002 C =12246.591050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.278 3.722 3 N -0.533 5.533 4 C 0.272 3.728 5 C -0.004 4.004 6 C -0.097 4.097 7 C -0.106 4.106 8 C -0.108 4.108 9 C -0.116 4.116 10 C 0.156 3.844 11 N -0.675 5.675 12 C 0.528 3.472 13 O -0.489 6.489 14 C -0.154 4.154 15 S -0.055 6.055 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.094 4.094 25 N -0.288 5.288 26 N -0.482 5.482 27 H 0.441 0.559 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.269 0.731 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 16.102 -6.200 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.000 4.000 3 N -0.262 5.262 4 C -0.007 4.007 5 C -0.007 4.007 6 C -0.118 4.118 7 C -0.124 4.124 8 C -0.112 4.112 9 C -0.172 4.172 10 C 0.060 3.940 11 N -0.321 5.321 12 C 0.316 3.684 13 O -0.361 6.361 14 C -0.304 4.304 15 S 0.171 5.829 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.117 4.117 25 N -0.117 5.117 26 N -0.201 5.201 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.670 14.743 -5.224 24.356 hybrid contribution 2.164 -0.104 -0.915 2.352 sum -16.506 14.639 -6.139 22.900 Atomic orbital electron populations 1.20384 0.83582 1.05026 1.04513 1.24368 0.96610 0.82860 0.96192 1.70415 1.00940 1.29336 1.25488 1.22260 0.91245 0.89044 0.98181 1.17236 0.88338 0.91000 1.04167 1.21065 0.99590 0.91478 0.99694 1.20689 0.90840 0.99568 1.01338 1.19738 0.95916 0.91967 1.03541 1.20755 0.95707 0.98401 1.02374 1.17450 0.84662 0.91450 1.00431 1.43688 1.07708 1.18165 1.62574 1.20571 0.90971 0.80088 0.76790 1.90707 1.45829 1.59793 1.39781 1.23550 0.94868 1.05968 1.06059 1.85455 1.15184 1.06939 1.75298 1.22820 0.95526 1.05101 1.45072 0.90882 1.24993 0.98787 0.95288 0.94487 1.70006 1.35252 1.08544 1.36444 0.86215 0.82786 0.77754 0.78695 1.19903 1.20807 1.19915 1.21513 0.89596 1.02245 0.98297 1.78467 0.95813 1.11793 1.25588 1.48040 1.04285 1.10140 1.57612 0.71288 0.89016 0.89821 0.88359 0.84885 0.85272 0.90984 0.90958 0.91540 0.75371 0.88724 0.88842 0.92090 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.28 2.91 8.22 -155.74 -1.28 1.63 16 3 N -0.53 -7.35 10.82 -8.56 -0.09 -7.44 16 4 C 0.27 4.36 7.77 -156.62 -1.22 3.14 16 5 C 0.00 -0.06 5.87 -104.92 -0.62 -0.68 16 6 C -0.10 -1.23 9.68 -39.22 -0.38 -1.61 16 7 C -0.11 -1.15 9.68 -39.66 -0.38 -1.53 16 8 C -0.11 -1.26 5.90 -104.38 -0.62 -1.88 16 9 C -0.12 -0.97 9.44 36.00 0.34 -0.63 16 10 C 0.16 2.30 6.41 -83.74 -0.54 1.77 16 11 N -0.68 -9.73 4.96 -9.89 -0.05 -9.78 16 12 C 0.53 9.97 7.65 -10.99 -0.08 9.89 16 13 O -0.49 -11.15 13.02 5.55 0.07 -11.08 16 14 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 17 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 20 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.09 -1.60 8.35 -39.06 -0.33 -1.93 16 25 N -0.29 -4.73 12.42 32.10 0.40 -4.33 16 26 N -0.48 -5.49 7.44 32.61 0.24 -5.24 16 27 H 0.44 3.33 8.96 -182.35 -1.63 1.69 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 1.51 7.83 -52.48 -0.41 1.10 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.07 0.56 6.98 -51.93 -0.36 0.19 16 36 H 0.41 4.40 7.40 -40.82 -0.30 4.10 16 37 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.16 3.18 5.56 -52.49 -0.29 2.89 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -38.00 361.82 -10.70 -48.70 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.92 Total: 4.06 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.30 Total: -7.55 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 1.23 Total: -52.21 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.00 -10.70 -48.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267233003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.927 kcal (2) G-P(sol) polarization free energy of solvation -38.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds