Wall clock time and date at job start Sat Apr 11 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46566 * 2 1 4 4 O 1.42898 * 109.47488 * 119.99776 * 2 1 3 5 5 C 1.35931 * 116.99488 * 85.29618 * 4 2 1 6 6 C 1.38853 * 120.40261 * 174.63156 * 5 4 2 7 7 N 1.31876 * 120.99584 * 179.97438 * 6 5 4 8 8 C 1.31683 * 121.94471 * 359.97438 * 7 6 5 9 9 C 1.39520 * 120.69072 * 0.24782 * 8 7 6 10 10 C 1.47855 * 120.53457 * 179.71965 * 9 8 7 11 11 O 1.21546 * 120.00383 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99567 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99688 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47064 * 35.00540 * 13 12 10 15 15 C 1.50705 * 109.47056 * 154.99909 * 13 12 10 16 16 H 1.08003 * 119.99665 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00070 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00253 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99923 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47198 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47048 * 119.99918 * 19 17 15 22 22 H 1.48497 * 109.46962 * 240.00044 * 19 17 15 23 23 C 1.52995 * 109.47122 * 274.99792 * 13 12 10 24 24 F 1.39900 * 109.47366 * 60.00493 * 23 13 12 25 25 F 1.39905 * 109.47040 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47171 * 299.99786 * 23 13 12 27 27 C 1.38843 * 120.40514 * 354.61210 * 5 4 2 28 28 H 1.09001 * 109.47148 * 299.99121 * 1 2 3 29 29 H 1.08999 * 109.47790 * 59.99961 * 1 2 3 30 30 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46721 * 240.00675 * 2 1 3 32 32 H 1.09004 * 109.46942 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47382 * 299.99994 * 3 2 1 34 34 H 1.09007 * 109.47028 * 60.00341 * 3 2 1 35 35 H 1.07998 * 119.49952 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.65193 * 179.97438 * 8 7 6 37 37 H 0.96997 * 119.99813 * 359.97438 * 12 10 9 38 38 H 0.97005 * 120.00436 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.88317 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1185 -2.0264 1.0957 6 6 2.6778 -2.7413 2.1465 7 7 2.7917 -4.0539 2.0901 8 6 2.3845 -4.7445 1.0454 9 6 1.8154 -4.1024 -0.0547 10 6 1.3649 -4.8805 -1.2285 11 8 0.8709 -4.3112 -2.1820 12 7 1.5022 -6.2213 -1.2411 13 6 1.0554 -6.9924 -2.4038 14 1 1.2314 -6.4155 -3.3118 15 6 1.8244 -8.2866 -2.4740 16 1 2.5715 -8.5119 -1.7273 17 6 1.5748 -9.1824 -3.4919 18 7 0.6654 -8.9078 -4.4013 19 14 2.5275 -10.7869 -3.5784 20 1 3.4853 -10.8557 -2.4455 21 1 1.5819 -11.9291 -3.4977 22 1 3.2732 -10.8512 -4.8609 23 6 -0.4389 -7.2935 -2.2725 24 9 -1.1528 -6.0921 -2.2074 25 9 -0.8655 -8.0304 -3.3826 26 9 -0.6647 -8.0339 -1.1072 27 6 1.6748 -2.7102 -0.0283 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8901 35 1 3.0246 -2.2145 3.0231 36 1 2.4962 -5.8187 1.0384 37 1 1.8968 -6.6756 -0.4804 38 1 0.4896 -9.5383 -5.1173 39 1 1.2348 -2.1816 -0.8610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:10 Heat of formation + Delta-G solvation = -177.657450 kcal Electronic energy + Delta-G solvation = -29228.102412 eV Core-core repulsion = 24528.992428 eV Total energy + Delta-G solvation = -4699.109985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.41544 -46.07108 -45.67546 -40.96414 -39.24776 -38.22204 -34.85893 -33.60924 -32.78772 -32.27150 -30.44044 -28.38179 -27.59473 -24.83651 -24.44686 -23.96858 -21.68960 -21.32950 -20.22002 -18.86801 -17.35266 -17.19167 -16.90175 -16.75706 -16.65630 -16.46881 -15.75792 -15.56336 -15.01215 -14.64793 -14.46697 -14.26087 -14.07202 -13.49618 -13.21702 -13.09635 -12.99264 -12.77070 -12.58813 -12.57084 -12.46800 -12.45368 -12.33116 -12.08312 -12.02879 -11.88065 -11.29216 -11.23672 -11.05030 -10.92039 -10.88927 -10.48658 -10.10541 -9.78579 -9.72783 -9.33251 -8.80134 -8.60191 -8.39613 -6.30027 -4.54533 0.63695 1.11803 2.83500 3.09531 3.15314 3.22560 3.25757 3.53615 3.88121 4.15885 4.31431 4.43742 4.49770 4.55014 4.59537 4.74000 4.87127 4.87406 4.91602 4.98250 5.24786 5.30809 5.42062 5.47155 5.51030 5.71410 5.75553 5.79503 5.87090 5.89312 5.96954 6.12751 6.21780 6.81801 6.99604 7.03567 7.37302 7.56198 7.76643 8.13018 8.41497 8.65929 9.13716 10.61683 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.003291 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.007897 B = 8506.849382 C = 9097.500771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.303 6.303 5 C 0.074 3.926 6 C 0.088 3.912 7 N -0.449 5.449 8 C 0.093 3.907 9 C -0.132 4.132 10 C 0.551 3.449 11 O -0.528 6.528 12 N -0.701 5.701 13 C 0.244 3.756 14 H 0.088 0.912 15 C -0.554 4.554 16 H 0.080 0.920 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.417 3.583 24 F -0.218 7.218 25 F -0.135 7.135 26 F -0.208 7.208 27 C -0.113 4.113 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.399 0.601 38 H 0.268 0.732 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 13.828 8.902 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.216 6.216 5 C 0.026 3.974 6 C -0.071 4.071 7 N -0.157 5.157 8 C -0.065 4.065 9 C -0.137 4.137 10 C 0.336 3.664 11 O -0.405 6.405 12 N -0.350 5.350 13 C 0.139 3.861 14 H 0.105 0.895 15 C -0.590 4.590 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.743 3.257 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.361 3.639 24 F -0.200 7.200 25 F -0.116 7.116 26 F -0.190 7.190 27 C -0.140 4.140 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.235 0.765 38 H 0.079 0.921 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.504 13.839 8.857 16.621 hybrid contribution -0.288 -0.771 -0.655 1.052 sum 2.216 13.068 8.202 15.587 Atomic orbital electron populations 1.22392 0.94654 1.03549 1.03309 1.22552 0.94726 0.93837 0.87297 1.21847 1.02120 0.93222 1.03179 1.86132 1.81178 1.15293 1.39042 1.20040 0.97736 0.84080 0.95525 1.22361 0.97838 0.89370 0.97484 1.67731 1.15535 1.06852 1.25565 1.22948 0.94761 1.00612 0.88218 1.21045 1.01685 0.94251 0.96740 1.18052 0.79284 0.82786 0.86282 1.90774 1.43857 1.70149 1.35700 1.46018 1.61700 1.05650 1.21664 1.19810 0.85678 0.94032 0.86566 0.89454 1.20910 1.23089 1.01488 1.13547 0.90213 1.25082 0.94795 0.99335 0.95148 1.70401 1.27998 1.36339 1.12446 0.86138 0.79526 0.81717 0.78361 1.19289 1.20512 1.20531 1.23113 0.93600 0.73333 0.73893 1.93070 1.82322 1.48267 1.96325 1.93412 1.91337 1.76161 1.50734 1.92996 1.96053 1.78446 1.51497 1.21888 0.99781 0.93953 0.98398 0.91341 0.90632 0.91619 0.90496 0.91579 0.90312 0.91406 0.81716 0.81810 0.76516 0.92077 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.20 37.16 0.34 -1.28 16 2 C 0.07 0.67 2.85 -26.73 -0.08 0.59 16 3 C -0.15 -1.01 9.56 37.16 0.36 -0.66 16 4 O -0.30 -3.39 9.81 -19.52 -0.19 -3.58 16 5 C 0.07 0.92 6.62 -39.13 -0.26 0.67 16 6 C 0.09 1.07 11.13 -17.31 -0.19 0.87 16 7 N -0.45 -6.10 10.34 -12.80 -0.13 -6.23 16 8 C 0.09 1.30 10.71 -17.14 -0.18 1.12 16 9 C -0.13 -2.08 5.89 -104.84 -0.62 -2.70 16 10 C 0.55 10.75 7.31 -12.32 -0.09 10.66 16 11 O -0.53 -11.95 14.99 5.33 0.08 -11.87 16 12 N -0.70 -13.94 4.94 -55.88 -0.28 -14.21 16 13 C 0.24 5.90 2.21 -69.08 -0.15 5.75 16 14 H 0.09 2.35 7.58 -51.93 -0.39 1.95 16 15 C -0.55 -13.72 8.46 -34.44 -0.29 -14.01 16 16 H 0.08 1.86 7.74 -52.48 -0.41 1.45 16 17 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -22.50 9.50 55.43 0.53 -21.97 16 19 Si 0.92 19.69 29.54 -169.99 -5.02 14.67 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C 0.42 10.48 2.81 37.16 0.10 10.59 16 24 F -0.22 -5.43 15.68 2.25 0.04 -5.40 16 25 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 26 F -0.21 -5.04 16.94 2.25 0.04 -5.00 16 27 C -0.11 -1.61 7.89 -38.72 -0.31 -1.92 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16 31 H 0.08 0.75 6.32 -51.93 -0.33 0.42 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.16 2.00 6.42 -52.48 -0.34 1.66 16 37 H 0.40 6.78 6.60 -40.82 -0.27 6.51 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 39 H 0.15 2.14 5.27 -52.49 -0.28 1.87 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -29.90 339.79 -5.29 -35.20 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.04 Total: 5.70 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -1.46 Total: 11.24 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.12 Total: -42.42 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.11 Total: -15.46 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 0.10 Total: -14.05 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.90 -5.29 -35.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.460 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds