Wall clock time and date at job start Sat Apr 11 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.91035 * 2 1 4 4 C 1.54909 * 111.00489 * 236.10204 * 2 1 3 5 5 N 1.47429 * 104.83170 * 204.91723 * 4 2 1 6 6 C 1.36936 * 125.64625 * 204.09609 * 5 4 2 7 7 H 1.07997 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00067 * 180.02562 * 6 5 4 9 9 N 1.31627 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00170 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47390 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47241 * 119.99902 * 10 8 6 13 13 H 1.48507 * 109.47125 * 240.00029 * 10 8 6 14 14 C 1.47014 * 108.70276 * 24.12361 * 5 4 2 15 15 C 1.54323 * 107.27411 * 358.94425 * 14 5 4 16 16 H 1.09002 * 110.72195 * 96.34851 * 15 14 5 17 17 N 1.46501 * 110.72374 * 219.44213 * 15 14 5 18 18 C 1.34774 * 119.99978 * 273.54848 * 17 15 14 19 19 O 1.21542 * 120.00008 * 359.97438 * 18 17 15 20 20 C 1.47857 * 120.00100 * 179.97438 * 18 17 15 21 21 N 1.29005 * 124.85052 * 359.97418 * 20 18 17 22 22 C 1.33161 * 118.20999 * 180.02562 * 21 20 18 23 23 C 1.41364 * 129.83070 * 180.02562 * 22 21 20 24 24 N 1.31014 * 120.66875 * 180.27812 * 23 22 21 25 25 C 1.32366 * 122.67538 * 359.38781 * 24 23 22 26 26 C 1.36526 * 121.02007 * 0.63402 * 25 24 23 27 27 C 1.39653 * 119.14150 * 359.68969 * 26 25 24 28 28 S 1.75901 * 132.43855 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47349 * 296.09250 * 1 2 3 30 30 H 1.08995 * 109.47472 * 56.10098 * 1 2 3 31 31 H 1.09002 * 109.46774 * 176.09682 * 1 2 3 32 32 H 1.09001 * 110.37065 * 86.07256 * 4 2 1 33 33 H 1.09004 * 110.36575 * 323.75234 * 4 2 1 34 34 H 0.97001 * 119.99435 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.88805 * 239.52472 * 14 5 4 36 36 H 1.09003 * 110.01034 * 118.43470 * 14 5 4 37 37 H 0.96999 * 120.00380 * 93.54172 * 17 15 14 38 38 H 1.08002 * 119.66229 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.48914 * 180.32749 * 25 24 23 40 40 H 1.07997 * 120.43333 * 179.67142 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4272 -1.2430 -0.7734 6 6 4.4641 -1.5665 -1.6072 7 1 4.3334 -1.5114 -2.6779 8 6 5.6831 -1.9653 -1.0765 9 7 5.8425 -2.0320 0.2284 10 14 7.0973 -2.4073 -2.2139 11 1 6.6642 -2.2518 -3.6258 12 1 8.2476 -1.5069 -1.9466 13 1 7.5044 -3.8151 -1.9737 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2286 0.0495 2.3815 18 6 2.3022 -0.5005 3.6096 19 8 2.2499 -1.7079 3.7389 20 6 2.4465 0.3648 4.7998 21 7 2.5118 1.6529 4.7712 22 6 2.6424 2.3023 5.9263 23 6 2.7360 3.6900 6.1794 24 7 2.8674 4.1388 7.4032 25 6 2.9077 3.3390 8.4572 26 6 2.8254 1.9836 8.3154 27 6 2.6904 1.4406 7.0359 28 16 2.5555 -0.2150 6.4572 29 1 -0.3634 0.4520 0.9229 30 1 -0.3634 0.5731 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1719 -2.0837 33 1 1.4519 -1.6703 -1.4025 34 1 6.6945 -2.3103 0.5993 35 1 4.2427 -0.5997 1.0599 36 1 3.6663 -2.2883 1.0422 37 1 2.2701 1.0131 2.2784 38 1 2.7038 4.3870 5.3550 39 1 3.0121 3.7649 9.4441 40 1 2.8646 1.3396 9.1815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080098205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:58 Heat of formation + Delta-G solvation = 67.300510 kcal Electronic energy + Delta-G solvation = -25264.311789 eV Core-core repulsion = 21592.726341 eV Total energy + Delta-G solvation = -3671.585448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18663 -39.77332 -38.04071 -37.41540 -34.04788 -32.74165 -32.48097 -30.86497 -30.39397 -28.06443 -26.25565 -25.61098 -24.62926 -23.58627 -22.74889 -20.85558 -20.14055 -19.71698 -18.93127 -17.81232 -17.36832 -16.91373 -16.21258 -15.90022 -15.67094 -15.02026 -14.98413 -14.56188 -14.43556 -14.26118 -13.75225 -13.25819 -13.03034 -12.97254 -12.83254 -12.73014 -12.03401 -11.90601 -11.73115 -11.37493 -11.06042 -10.96709 -10.81305 -10.76610 -10.55137 -10.41373 -10.04150 -10.00304 -9.94650 -9.91905 -9.70811 -9.39659 -8.72825 -8.67225 -8.59308 -6.85145 -5.70373 -3.05571 -0.35968 0.58247 0.69245 1.25531 1.61515 2.96985 3.06101 3.40364 3.40617 3.45678 3.48608 3.63453 3.97089 4.11185 4.46283 4.50022 4.60295 4.90676 5.02198 5.21295 5.27638 5.31494 5.39927 5.48075 5.54299 5.70791 5.92727 5.93897 5.97441 6.10976 6.12536 6.29401 6.43838 6.58392 6.60166 6.86793 6.95469 7.43909 7.49215 7.55637 7.71005 7.82673 8.19527 8.25368 9.20314 9.81197 10.45379 11.40557 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.002985 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.211774 B = 9378.442778 C =10066.553803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.118 3.882 16 H 0.092 0.908 17 N -0.679 5.679 18 C 0.589 3.411 19 O -0.514 6.514 20 C 0.075 3.925 21 N -0.421 5.421 22 C 0.027 3.973 23 C 0.194 3.806 24 N -0.476 5.476 25 C 0.101 3.899 26 C -0.121 4.121 27 C -0.160 4.160 28 S 0.183 5.817 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.024 0.976 34 H 0.252 0.748 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.408 0.592 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 10.094 15.138 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.098 0.902 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.329 5.329 18 C 0.369 3.631 19 O -0.388 6.388 20 C -0.210 4.210 21 N -0.138 5.138 22 C -0.100 4.100 23 C 0.022 3.978 24 N -0.186 5.186 25 C -0.049 4.049 26 C -0.146 4.146 27 C -0.287 4.287 28 S 0.440 5.560 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.243 0.757 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.114 9.162 15.356 20.544 hybrid contribution 0.970 0.179 -0.502 1.107 sum -9.144 9.341 14.854 19.786 Atomic orbital electron populations 1.21714 0.94865 1.01890 1.01148 1.22630 0.94966 0.99676 0.96014 0.90157 1.21602 0.87595 0.95058 0.94288 1.44399 1.07932 1.79246 1.01648 1.19091 0.89263 1.38476 0.88949 0.90194 1.24835 0.97918 1.01681 0.96029 1.69975 1.24123 1.53301 1.09206 0.86039 0.82351 0.77765 0.79548 1.20487 1.21795 1.21739 1.21488 0.89647 1.00593 0.83578 1.22701 1.00902 0.92685 0.82344 0.88972 1.45729 1.71056 1.11261 1.04834 1.16801 0.78389 0.86240 0.81682 1.90883 1.49952 1.12673 1.85287 1.27642 1.03000 0.91979 0.98405 1.65840 1.12746 1.06842 1.28401 1.20149 1.06455 0.97066 0.86302 1.22861 0.90652 0.89621 0.94649 1.67514 1.12647 1.39621 0.98772 1.22433 0.94962 0.89379 0.98104 1.21089 1.01944 0.96844 0.94730 1.24618 1.05783 0.98706 0.99543 1.85287 1.69728 1.00995 1.00008 0.93051 0.92597 0.92486 0.93792 0.95868 0.93764 0.93014 0.93098 0.75662 0.80781 0.81492 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.31 37.16 0.35 -1.43 16 2 C -0.11 -1.83 3.25 -88.47 -0.29 -2.12 16 3 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 4 C 0.14 2.80 6.70 -2.53 -0.02 2.78 16 5 N -0.61 -15.31 3.39 -170.07 -0.58 -15.89 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.17 4.23 5.12 -3.07 -0.02 4.21 16 15 C 0.12 2.20 2.70 -66.10 -0.18 2.03 16 16 H 0.09 1.77 7.59 -51.93 -0.39 1.38 16 17 N -0.68 -11.19 5.13 -52.97 -0.27 -11.47 16 18 C 0.59 10.17 7.83 -12.33 -0.10 10.08 16 19 O -0.51 -10.38 16.63 5.33 0.09 -10.29 16 20 C 0.07 1.10 7.41 -14.80 -0.11 0.99 16 21 N -0.42 -5.77 10.08 -8.53 -0.09 -5.85 16 22 C 0.03 0.33 6.99 -85.22 -0.60 -0.27 16 23 C 0.19 1.99 11.30 -16.71 -0.19 1.80 16 24 N -0.48 -4.74 10.28 -12.92 -0.13 -4.88 16 25 C 0.10 0.80 11.12 -17.94 -0.20 0.60 16 26 C -0.12 -1.01 10.09 -39.67 -0.40 -1.41 16 27 C -0.16 -1.79 6.62 -38.18 -0.25 -2.04 16 28 S 0.18 2.25 23.17 -107.50 -2.49 -0.24 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.46 7.98 -51.93 -0.41 0.04 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.05 1.41 7.27 -51.93 -0.38 1.03 16 36 H 0.05 1.44 7.50 -51.93 -0.39 1.05 16 37 H 0.41 5.91 8.15 -40.82 -0.33 5.58 16 38 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -33.12 353.38 -9.67 -42.78 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.83 Total: 1.76 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.25 Total: 8.36 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.50 Total: -64.93 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.49 Total: -0.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.12 -9.67 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080098205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.084 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds