Wall clock time and date at job start Sat Apr 11 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.91035 * 2 1 4 4 C 1.54909 * 111.00489 * 236.10204 * 2 1 3 5 5 N 1.47429 * 104.83170 * 204.91723 * 4 2 1 6 6 C 1.36936 * 125.64625 * 204.09609 * 5 4 2 7 7 H 1.07997 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00067 * 180.02562 * 6 5 4 9 9 N 1.31627 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00170 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47390 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47241 * 119.99902 * 10 8 6 13 13 H 1.48507 * 109.47125 * 240.00029 * 10 8 6 14 14 C 1.47014 * 108.70276 * 24.12361 * 5 4 2 15 15 C 1.54323 * 107.27411 * 358.94425 * 14 5 4 16 16 H 1.09002 * 110.72195 * 96.34851 * 15 14 5 17 17 N 1.46501 * 110.72374 * 219.44213 * 15 14 5 18 18 C 1.34774 * 119.99978 * 273.54848 * 17 15 14 19 19 O 1.21542 * 120.00008 * 359.97438 * 18 17 15 20 20 C 1.47857 * 120.00100 * 179.97438 * 18 17 15 21 21 N 1.29005 * 124.85052 * 359.97418 * 20 18 17 22 22 C 1.33161 * 118.20999 * 180.02562 * 21 20 18 23 23 C 1.41364 * 129.83070 * 180.02562 * 22 21 20 24 24 N 1.31014 * 120.66875 * 180.27812 * 23 22 21 25 25 C 1.32366 * 122.67538 * 359.38781 * 24 23 22 26 26 C 1.36526 * 121.02007 * 0.63402 * 25 24 23 27 27 C 1.39653 * 119.14150 * 359.68969 * 26 25 24 28 28 S 1.75901 * 132.43855 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47349 * 296.09250 * 1 2 3 30 30 H 1.08995 * 109.47472 * 56.10098 * 1 2 3 31 31 H 1.09002 * 109.46774 * 176.09682 * 1 2 3 32 32 H 1.09001 * 110.37065 * 86.07256 * 4 2 1 33 33 H 1.09004 * 110.36575 * 323.75234 * 4 2 1 34 34 H 0.97001 * 119.99435 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.88805 * 239.52472 * 14 5 4 36 36 H 1.09003 * 110.01034 * 118.43470 * 14 5 4 37 37 H 0.96999 * 120.00380 * 93.54172 * 17 15 14 38 38 H 1.08002 * 119.66229 * 359.97438 * 23 22 21 39 39 H 1.07999 * 119.48914 * 180.32749 * 25 24 23 40 40 H 1.07997 * 120.43333 * 179.67142 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4272 -1.2430 -0.7734 6 6 4.4641 -1.5665 -1.6072 7 1 4.3334 -1.5114 -2.6779 8 6 5.6831 -1.9653 -1.0765 9 7 5.8425 -2.0320 0.2284 10 14 7.0973 -2.4073 -2.2139 11 1 6.6642 -2.2518 -3.6258 12 1 8.2476 -1.5069 -1.9466 13 1 7.5044 -3.8151 -1.9737 14 6 3.4675 -1.2741 0.6959 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2286 0.0495 2.3815 18 6 2.3022 -0.5005 3.6096 19 8 2.2499 -1.7079 3.7389 20 6 2.4465 0.3648 4.7998 21 7 2.5118 1.6529 4.7712 22 6 2.6424 2.3023 5.9263 23 6 2.7360 3.6900 6.1794 24 7 2.8674 4.1388 7.4032 25 6 2.9077 3.3390 8.4572 26 6 2.8254 1.9836 8.3154 27 6 2.6904 1.4406 7.0359 28 16 2.5555 -0.2150 6.4572 29 1 -0.3634 0.4520 0.9229 30 1 -0.3634 0.5731 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1719 -2.0837 33 1 1.4519 -1.6703 -1.4025 34 1 6.6945 -2.3103 0.5993 35 1 4.2427 -0.5997 1.0599 36 1 3.6663 -2.2883 1.0422 37 1 2.2701 1.0131 2.2784 38 1 2.7038 4.3870 5.3550 39 1 3.0121 3.7649 9.4441 40 1 2.8646 1.3396 9.1815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080098205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:57 Heat of formation + Delta-G solvation = 43.497192 kcal Electronic energy + Delta-G solvation = -25265.343978 eV Core-core repulsion = 21592.726341 eV Total energy + Delta-G solvation = -3672.617637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06241 -41.13546 -39.34810 -38.65676 -35.74796 -34.38017 -33.26717 -32.20316 -31.77402 -29.66514 -27.61023 -27.11096 -25.65848 -25.00864 -23.73695 -22.41521 -21.64313 -21.13667 -19.88387 -18.93149 -18.90172 -18.22879 -17.41983 -17.14472 -16.87212 -16.69183 -15.98100 -15.77970 -15.56752 -15.50706 -15.28453 -14.79341 -14.48696 -14.10969 -13.98387 -13.71751 -13.68706 -13.34744 -13.06543 -12.90253 -12.77504 -12.62985 -12.20029 -12.14291 -11.87660 -11.82201 -11.79431 -11.62987 -11.49864 -11.09463 -10.78870 -10.77067 -10.38868 -10.13729 -9.52204 -8.93592 -7.85767 -5.23352 -1.30627 -0.26451 -0.18167 0.32235 0.65759 1.44327 1.45906 1.56343 1.72575 1.86375 2.46604 2.54804 2.59656 3.22729 3.33186 3.36309 3.48416 3.61563 3.74421 3.80352 4.00377 4.07618 4.23037 4.43101 4.52167 4.58993 4.62707 4.69722 4.70550 4.88799 5.01541 5.07413 5.08133 5.27982 5.29561 5.43959 5.48859 5.53908 5.72852 5.96159 6.15390 6.30303 6.74020 6.86995 7.06240 7.74545 8.38016 9.23813 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.002985 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.211774 B = 9378.442778 C =10066.553803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.090 0.910 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.980 3.020 11 H -0.260 1.260 12 H -0.293 1.293 13 H -0.296 1.296 14 C 0.188 3.812 15 C 0.134 3.866 16 H 0.086 0.914 17 N -0.672 5.672 18 C 0.590 3.410 19 O -0.553 6.553 20 C 0.038 3.962 21 N -0.415 5.415 22 C -0.005 4.005 23 C 0.198 3.802 24 N -0.488 5.488 25 C 0.116 3.884 26 C -0.121 4.121 27 C -0.160 4.160 28 S 0.190 5.810 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.243 0.757 35 H 0.015 0.985 36 H -0.003 1.003 37 H 0.418 0.582 38 H 0.192 0.808 39 H 0.209 0.791 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 12.469 16.082 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.109 0.891 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.184 1.184 12 H -0.220 1.220 13 H -0.223 1.223 14 C 0.061 3.939 15 C 0.028 3.972 16 H 0.104 0.896 17 N -0.322 5.322 18 C 0.372 3.628 19 O -0.430 6.430 20 C -0.245 4.245 21 N -0.133 5.133 22 C -0.131 4.131 23 C 0.026 3.974 24 N -0.197 5.197 25 C -0.034 4.034 26 C -0.146 4.146 27 C -0.286 4.286 28 S 0.446 5.554 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.015 0.985 37 H 0.256 0.744 38 H 0.209 0.791 39 H 0.226 0.774 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.381 11.573 16.259 22.974 hybrid contribution 1.349 -0.435 -0.638 1.554 sum -10.032 11.138 15.621 21.649 Atomic orbital electron populations 1.21668 0.91400 1.02595 1.03060 1.22562 0.97535 0.98902 0.92356 0.89117 1.21879 0.85150 0.95915 0.96253 1.44720 1.09628 1.79239 1.01826 1.19553 0.90030 1.37243 0.89859 0.89192 1.25734 1.00747 1.02499 0.97430 1.70242 1.24076 1.54812 1.11124 0.84976 0.78860 0.76712 0.78587 1.18401 1.22020 1.22306 1.21097 0.92209 0.96830 0.83743 1.22304 0.97172 0.93631 0.84054 0.89564 1.45559 1.70940 1.11494 1.04239 1.17120 0.77109 0.86118 0.82473 1.90848 1.51634 1.14458 1.86057 1.26981 1.06752 0.92302 0.98509 1.65755 1.11333 1.06462 1.29718 1.20399 1.08509 0.98040 0.86123 1.23186 0.89631 0.89003 0.95545 1.67635 1.12938 1.40117 0.99030 1.23176 0.91975 0.89097 0.99170 1.21539 1.00961 0.97596 0.94462 1.24877 1.05413 0.97699 1.00644 1.85139 1.69802 1.02074 0.98341 0.91551 0.90170 0.92523 0.92446 0.95117 0.94733 0.96677 0.98517 0.74380 0.79081 0.77450 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.31 71.98 0.67 -2.29 16 2 C -0.09 -2.94 3.25 -9.40 -0.03 -2.97 16 3 H 0.09 2.68 8.00 -2.39 -0.02 2.67 16 4 C 0.13 5.18 6.70 86.85 0.58 5.76 16 5 N -0.63 -32.63 3.39 -691.98 -2.35 -34.98 16 6 C -0.24 -13.48 10.28 84.03 0.86 -12.61 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 9 N -0.95 -60.06 10.31 21.65 0.22 -59.84 16 10 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 14 C 0.19 9.77 5.12 86.73 0.44 10.21 16 15 C 0.13 5.16 2.70 46.18 0.12 5.28 16 16 H 0.09 3.45 7.59 -2.39 -0.02 3.43 16 17 N -0.67 -22.92 5.13 -439.78 -2.25 -25.17 16 18 C 0.59 21.45 7.83 86.79 0.68 22.13 16 19 O -0.55 -23.84 16.63 -3.85 -0.06 -23.91 16 20 C 0.04 1.16 7.41 87.66 0.65 1.81 16 21 N -0.41 -11.38 10.08 -180.89 -1.82 -13.21 16 22 C 0.00 -0.11 6.99 40.28 0.28 0.18 16 23 C 0.20 3.68 11.30 85.58 0.97 4.64 16 24 N -0.49 -8.24 10.28 -194.80 -2.00 -10.25 16 25 C 0.12 1.37 11.12 84.21 0.94 2.31 16 26 C -0.12 -1.61 10.09 22.21 0.22 -1.39 16 27 C -0.16 -3.35 6.62 23.18 0.15 -3.19 16 28 S 0.19 4.69 23.17 -56.49 -1.31 3.38 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.32 8.07 -2.39 -0.02 1.30 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.03 1.17 7.98 -2.38 -0.02 1.15 16 34 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.02 0.88 7.27 -2.38 -0.02 0.86 16 36 H 0.00 -0.21 7.50 -2.39 -0.02 -0.23 16 37 H 0.42 12.27 8.15 -92.71 -0.76 11.52 16 38 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -77.20 353.38 -0.21 -77.41 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.33 Total: 11.48 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 7.01 Total: 26.16 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -8.21 Total: -143.45 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.38 kcal Total: -77.20 -0.21 -77.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080098205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.905 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds