Wall clock time and date at job start Sat Apr 11 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99619 * 2 1 4 4 C 1.53002 * 109.46929 * 264.73100 * 3 2 1 5 5 H 1.09001 * 112.96450 * 294.22908 * 4 3 2 6 6 C 1.53946 * 113.76925 * 65.90828 * 4 3 2 7 7 C 1.53943 * 86.28996 * 137.91175 * 6 4 3 8 8 N 1.47578 * 113.76977 * 162.55118 * 4 3 2 9 9 C 1.36933 * 134.49319 * 41.06905 * 8 4 3 10 10 H 1.08000 * 120.00070 * 4.91635 * 9 8 4 11 11 C 1.38814 * 119.99986 * 184.91318 * 9 8 4 12 12 N 1.31613 * 120.00124 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99847 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47354 * 120.00309 * 13 11 9 16 16 H 1.48508 * 109.46813 * 239.99850 * 13 11 9 17 17 C 1.34773 * 120.00103 * 179.97438 * 2 1 3 18 18 O 1.21546 * 119.99608 * 180.10171 * 17 2 1 19 19 C 1.47811 * 120.00139 * 0.09746 * 17 2 1 20 20 N 1.28948 * 124.85268 * 170.27042 * 19 17 2 21 21 C 1.33220 * 118.15383 * 180.02562 * 20 19 17 22 22 C 1.41656 * 129.11157 * 179.97438 * 21 20 19 23 23 C 1.36498 * 118.87954 * 180.02562 * 22 21 20 24 24 C 1.38797 * 119.89776 * 359.96217 * 23 22 21 25 25 N 1.31393 * 120.95177 * 0.06020 * 24 23 22 26 26 C 1.33044 * 121.82237 * 359.95641 * 25 24 23 27 27 S 1.75856 * 124.85442 * 350.32166 * 19 17 2 28 28 H 1.08992 * 109.47365 * 263.64614 * 1 2 3 29 29 H 1.08996 * 109.46885 * 23.65216 * 1 2 3 30 30 H 1.09000 * 109.46720 * 143.64933 * 1 2 3 31 31 H 1.08997 * 109.47706 * 24.72795 * 3 2 1 32 32 H 1.08992 * 109.47146 * 144.73532 * 3 2 1 33 33 H 1.09005 * 113.74002 * 252.25284 * 6 4 3 34 34 H 1.08998 * 113.74478 * 23.45629 * 6 4 3 35 35 H 1.09000 * 113.77393 * 90.69455 * 7 6 4 36 36 H 1.09000 * 113.76833 * 221.97952 * 7 6 4 37 37 H 0.97006 * 120.00017 * 179.97438 * 12 11 9 38 38 H 1.08003 * 120.56496 * 0.02562 * 22 21 20 39 39 H 1.07997 * 120.05401 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.52759 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5672 1.6442 -1.4364 5 1 3.2760 0.9503 -1.8884 6 6 1.3521 1.9584 -2.3280 7 6 2.1836 3.1324 -2.8756 8 7 2.9348 3.0636 -1.6045 9 6 3.6738 3.9563 -0.8751 10 1 4.1997 3.6270 0.0088 11 6 3.7469 5.2845 -1.2719 12 7 3.1064 5.6857 -2.3494 13 14 4.7556 6.5022 -0.2772 14 1 5.3737 5.8051 0.8791 15 1 5.8214 7.0796 -1.1352 16 1 3.8730 7.5903 0.2153 17 6 2.1389 -1.1672 0.0005 18 8 3.3544 -1.1671 0.0024 19 6 1.3999 -2.4473 -0.0011 20 7 1.9350 -3.6068 -0.1796 21 6 1.1408 -4.6761 -0.1554 22 6 1.4759 -6.0422 -0.3230 23 6 0.4835 -6.9772 -0.2586 24 6 -0.8270 -6.5805 -0.0314 25 7 -1.1320 -5.3118 0.1228 26 6 -0.2074 -4.3566 0.0698 27 16 -0.3349 -2.6065 0.2389 28 1 -0.3634 -0.1137 1.0213 29 1 -0.3633 0.9413 -0.4123 30 1 -0.3633 -0.8277 -0.6091 31 1 1.5708 2.0502 0.4299 32 1 3.1058 1.1640 0.5933 33 1 1.1403 1.1873 -3.0688 34 1 0.4673 2.2671 -1.7712 35 1 2.7807 2.8772 -3.7511 36 1 1.6136 4.0527 -3.0032 37 1 3.1572 6.6139 -2.6264 38 1 2.4994 -6.3390 -0.4987 39 1 0.7177 -8.0239 -0.3841 40 1 -1.6075 -7.3253 0.0188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:00 Heat of formation + Delta-G solvation = 113.235609 kcal Electronic energy + Delta-G solvation = -25230.013427 eV Core-core repulsion = 21560.419875 eV Total energy + Delta-G solvation = -3669.593553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20902 -40.05660 -38.10955 -37.45410 -35.50366 -32.92360 -32.18433 -30.84428 -29.02211 -27.88761 -27.23229 -25.68999 -24.55912 -23.41091 -23.15427 -21.84852 -19.92668 -19.24405 -18.73977 -17.76045 -17.40819 -16.81957 -16.49035 -16.12699 -15.78014 -15.39632 -15.20016 -14.71941 -14.23629 -13.81976 -13.78656 -13.69666 -13.50970 -13.31445 -13.14154 -12.80876 -12.43218 -12.29244 -11.85790 -11.47517 -11.12527 -10.98559 -10.87651 -10.76007 -10.64229 -10.46055 -10.13609 -9.85327 -9.74229 -9.67234 -9.51526 -9.28250 -8.92306 -8.78092 -8.53311 -6.87364 -5.75356 -3.09105 -0.42770 0.57722 0.59568 1.19598 1.61995 2.46502 2.87401 3.29017 3.39578 3.45694 3.47776 3.61002 3.94448 4.13505 4.32109 4.40902 4.46220 4.74149 4.75813 5.07539 5.11350 5.17517 5.35540 5.38197 5.48456 5.52487 5.53974 5.72312 5.86799 5.92035 6.11656 6.15621 6.30387 6.46218 6.66374 6.74615 6.98117 7.19151 7.23653 7.26671 7.43700 7.60091 7.93203 7.99937 9.05383 9.71972 10.60644 11.40750 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.002501 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.336399 B =11190.659271 C =11434.149114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.590 5.590 3 C 0.121 3.879 4 C 0.128 3.872 5 H 0.050 0.950 6 C -0.160 4.160 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.222 4.222 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.584 3.416 18 O -0.487 6.487 19 C 0.075 3.925 20 N -0.400 5.400 21 C 0.027 3.973 22 C -0.008 4.008 23 C -0.170 4.170 24 C 0.142 3.858 25 N -0.447 5.447 26 C -0.002 4.002 27 S 0.168 5.832 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.079 0.921 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 -23.374 4.589 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.325 5.325 3 C -0.002 4.002 4 C 0.020 3.980 5 H 0.068 0.932 6 C -0.198 4.198 7 C 0.031 3.969 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.365 3.635 18 O -0.359 6.359 19 C -0.211 4.211 20 N -0.115 5.115 21 C -0.099 4.099 22 C -0.036 4.036 23 C -0.193 4.193 24 C -0.030 4.030 25 N -0.157 5.157 26 C -0.248 4.248 27 S 0.424 5.576 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.372 -21.956 4.929 25.679 hybrid contribution 1.687 -0.639 0.080 1.805 sum -10.686 -22.595 5.008 25.491 Atomic orbital electron populations 1.22177 0.79845 1.04142 1.02718 1.47640 1.06865 1.05935 1.72015 1.22009 0.97084 0.81283 0.99784 1.22559 0.94064 0.88881 0.92526 0.93221 1.23783 0.97395 0.99530 0.99101 1.22304 0.90710 0.95684 0.88226 1.46064 1.60466 1.04245 1.21954 1.19071 1.22521 0.87984 1.05372 0.90272 1.24774 1.00704 0.96856 0.98013 1.69827 1.46051 1.15767 1.25046 0.86078 0.79407 0.81300 0.79176 1.20405 1.21795 1.21725 1.16866 0.86596 0.81123 0.78923 1.90881 1.11935 1.85535 1.47543 1.27277 0.93197 0.96434 1.04217 1.65605 1.37072 0.97120 1.11665 1.19940 0.89049 0.94399 1.06515 1.21078 1.01222 0.88494 0.92836 1.21767 0.93717 1.01238 1.02554 1.23087 0.95892 0.91827 0.92160 1.67260 1.34758 1.00472 1.13227 1.25889 0.93107 1.01916 1.03870 1.85786 1.07562 0.93720 1.70568 0.91034 0.87481 0.90907 0.88773 0.89941 0.93297 0.90821 0.95865 0.90306 0.93748 0.83246 0.83186 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.62 59.85 0.52 1.08 16 2 N -0.59 -8.35 2.79 -182.71 -0.51 -8.86 16 3 C 0.12 2.07 5.23 -4.04 -0.02 2.04 16 4 C 0.13 2.58 4.53 -66.86 -0.30 2.28 16 5 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.16 -2.89 7.31 -25.79 -0.19 -3.07 16 7 C 0.16 3.62 7.65 -2.85 -0.02 3.60 16 8 N -0.60 -15.06 3.58 -169.73 -0.61 -15.67 16 9 C -0.22 -6.11 10.51 -15.06 -0.16 -6.26 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -26.98 11.32 55.49 0.63 -26.35 16 13 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.58 9.40 7.65 -12.35 -0.09 9.31 16 18 O -0.49 -9.77 16.72 5.33 0.09 -9.68 16 19 C 0.07 1.05 7.18 -14.85 -0.11 0.95 16 20 N -0.40 -5.99 10.46 -8.53 -0.09 -6.08 16 21 C 0.03 0.34 6.95 -85.16 -0.59 -0.26 16 22 C -0.01 -0.07 10.18 -38.91 -0.40 -0.47 16 23 C -0.17 -1.04 10.00 -40.00 -0.40 -1.45 16 24 C 0.14 1.01 11.19 -17.53 -0.20 0.81 16 25 N -0.45 -4.79 10.38 -11.60 -0.12 -4.91 16 26 C 0.00 -0.03 7.72 -16.22 -0.13 -0.15 16 27 S 0.17 1.81 18.16 -107.50 -1.95 -0.15 16 28 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 29 H 0.11 0.97 6.67 -51.93 -0.35 0.62 16 30 H 0.07 0.67 4.64 -23.42 -0.11 0.56 16 31 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 32 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.20 6.95 -51.93 -0.36 0.84 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 2.00 6.97 -51.93 -0.36 1.64 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -35.29 347.84 -9.00 -44.29 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.47 Total: -2.99 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -2.18 Total: 8.12 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.70 Total: -61.87 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.95 Total: -0.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.29 -9.00 -44.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.528 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds