Wall clock time and date at job start Sat Apr 11 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99619 * 2 1 4 4 C 1.53002 * 109.46929 * 264.73100 * 3 2 1 5 5 H 1.09001 * 112.96450 * 294.22908 * 4 3 2 6 6 C 1.53946 * 113.76925 * 65.90828 * 4 3 2 7 7 C 1.53943 * 86.28996 * 137.91175 * 6 4 3 8 8 N 1.47578 * 113.76977 * 162.55118 * 4 3 2 9 9 C 1.36933 * 134.49319 * 41.06905 * 8 4 3 10 10 H 1.08000 * 120.00070 * 4.91635 * 9 8 4 11 11 C 1.38814 * 119.99986 * 184.91318 * 9 8 4 12 12 N 1.31613 * 120.00124 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99847 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47354 * 120.00309 * 13 11 9 16 16 H 1.48508 * 109.46813 * 239.99850 * 13 11 9 17 17 C 1.34773 * 120.00103 * 179.97438 * 2 1 3 18 18 O 1.21546 * 119.99608 * 180.10171 * 17 2 1 19 19 C 1.47811 * 120.00139 * 0.09746 * 17 2 1 20 20 N 1.28948 * 124.85268 * 170.27042 * 19 17 2 21 21 C 1.33220 * 118.15383 * 180.02562 * 20 19 17 22 22 C 1.41656 * 129.11157 * 179.97438 * 21 20 19 23 23 C 1.36498 * 118.87954 * 180.02562 * 22 21 20 24 24 C 1.38797 * 119.89776 * 359.96217 * 23 22 21 25 25 N 1.31393 * 120.95177 * 0.06020 * 24 23 22 26 26 C 1.33044 * 121.82237 * 359.95641 * 25 24 23 27 27 S 1.75856 * 124.85442 * 350.32166 * 19 17 2 28 28 H 1.08992 * 109.47365 * 263.64614 * 1 2 3 29 29 H 1.08996 * 109.46885 * 23.65216 * 1 2 3 30 30 H 1.09000 * 109.46720 * 143.64933 * 1 2 3 31 31 H 1.08997 * 109.47706 * 24.72795 * 3 2 1 32 32 H 1.08992 * 109.47146 * 144.73532 * 3 2 1 33 33 H 1.09005 * 113.74002 * 252.25284 * 6 4 3 34 34 H 1.08998 * 113.74478 * 23.45629 * 6 4 3 35 35 H 1.09000 * 113.77393 * 90.69455 * 7 6 4 36 36 H 1.09000 * 113.76833 * 221.97952 * 7 6 4 37 37 H 0.97006 * 120.00017 * 179.97438 * 12 11 9 38 38 H 1.08003 * 120.56496 * 0.02562 * 22 21 20 39 39 H 1.07997 * 120.05401 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.52759 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5672 1.6442 -1.4364 5 1 3.2760 0.9503 -1.8884 6 6 1.3521 1.9584 -2.3280 7 6 2.1836 3.1324 -2.8756 8 7 2.9348 3.0636 -1.6045 9 6 3.6738 3.9563 -0.8751 10 1 4.1997 3.6270 0.0088 11 6 3.7469 5.2845 -1.2719 12 7 3.1064 5.6857 -2.3494 13 14 4.7556 6.5022 -0.2772 14 1 5.3737 5.8051 0.8791 15 1 5.8214 7.0796 -1.1352 16 1 3.8730 7.5903 0.2153 17 6 2.1389 -1.1672 0.0005 18 8 3.3544 -1.1671 0.0024 19 6 1.3999 -2.4473 -0.0011 20 7 1.9350 -3.6068 -0.1796 21 6 1.1408 -4.6761 -0.1554 22 6 1.4759 -6.0422 -0.3230 23 6 0.4835 -6.9772 -0.2586 24 6 -0.8270 -6.5805 -0.0314 25 7 -1.1320 -5.3118 0.1228 26 6 -0.2074 -4.3566 0.0698 27 16 -0.3349 -2.6065 0.2389 28 1 -0.3634 -0.1137 1.0213 29 1 -0.3633 0.9413 -0.4123 30 1 -0.3633 -0.8277 -0.6091 31 1 1.5708 2.0502 0.4299 32 1 3.1058 1.1640 0.5933 33 1 1.1403 1.1873 -3.0688 34 1 0.4673 2.2671 -1.7712 35 1 2.7807 2.8772 -3.7511 36 1 1.6136 4.0527 -3.0032 37 1 3.1572 6.6139 -2.6264 38 1 2.4994 -6.3390 -0.4987 39 1 0.7177 -8.0239 -0.3841 40 1 -1.6075 -7.3253 0.0188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:59 Heat of formation + Delta-G solvation = 87.777603 kcal Electronic energy + Delta-G solvation = -25231.117369 eV Core-core repulsion = 21560.419875 eV Total energy + Delta-G solvation = -3670.697494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01170 -41.24607 -39.60455 -38.47855 -36.77696 -34.23420 -33.57150 -31.77498 -30.21658 -29.84912 -28.21926 -26.75995 -25.40366 -25.24065 -24.32898 -23.01878 -21.07599 -20.77214 -19.76853 -18.80948 -18.44582 -18.35418 -17.38020 -17.34236 -16.99781 -16.63980 -16.25003 -16.01713 -15.81947 -15.34440 -15.04429 -14.52111 -14.38271 -14.32514 -14.11497 -13.90122 -13.75277 -13.67766 -13.36812 -12.96556 -12.77920 -12.56775 -12.40379 -12.24102 -11.87977 -11.73973 -11.57612 -11.53726 -11.36498 -11.12170 -10.83337 -10.34437 -10.15439 -9.90639 -9.56617 -8.89952 -7.87846 -5.22628 -1.26884 -0.25774 -0.07639 0.34199 0.73655 1.35066 1.46134 1.47568 1.57387 1.80369 2.47090 2.57149 2.72268 3.19743 3.31035 3.39476 3.43309 3.57677 3.85686 3.86621 3.95728 4.15460 4.23286 4.27347 4.45658 4.47227 4.50721 4.69358 4.74054 4.75225 4.91049 4.98046 4.98433 5.02822 5.16036 5.33928 5.39811 5.58967 5.70494 5.93539 5.97140 6.25589 6.54512 6.74613 6.94481 7.62770 8.58201 9.28037 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.002501 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.336399 B =11190.659271 C =11434.149114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.583 5.583 3 C 0.137 3.863 4 C 0.127 3.873 5 H 0.026 0.974 6 C -0.124 4.124 7 C 0.146 3.854 8 N -0.627 5.627 9 C -0.229 4.229 10 H 0.079 0.921 11 C -0.064 4.064 12 N -0.950 5.950 13 Si 0.974 3.026 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.287 1.287 17 C 0.583 3.417 18 O -0.544 6.544 19 C 0.038 3.962 20 N -0.429 5.429 21 C -0.006 4.006 22 C -0.022 4.022 23 C -0.148 4.148 24 C 0.153 3.847 25 N -0.473 5.473 26 C -0.022 4.022 27 S 0.232 5.768 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.007 0.993 36 H 0.055 0.945 37 H 0.248 0.752 38 H 0.161 0.839 39 H 0.197 0.803 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -26.187 5.534 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.315 5.315 3 C 0.014 3.986 4 C 0.020 3.980 5 H 0.044 0.956 6 C -0.162 4.162 7 C 0.021 3.979 8 N -0.353 5.353 9 C -0.357 4.357 10 H 0.096 0.904 11 C -0.257 4.257 12 N -0.599 5.599 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.224 1.224 16 H -0.213 1.213 17 C 0.366 3.634 18 O -0.420 6.420 19 C -0.246 4.246 20 N -0.145 5.145 21 C -0.132 4.132 22 C -0.050 4.050 23 C -0.170 4.170 24 C -0.019 4.019 25 N -0.184 5.184 26 C -0.267 4.267 27 S 0.487 5.513 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.100 -24.790 5.890 29.619 hybrid contribution 2.427 -0.062 -0.243 2.440 sum -12.674 -24.853 5.647 28.463 Atomic orbital electron populations 1.22525 0.76793 1.05450 1.04838 1.47578 1.08538 1.04336 1.71095 1.21580 0.96983 0.82955 0.97117 1.22605 0.94441 0.86082 0.94891 0.95617 1.23560 0.96671 0.97415 0.98574 1.22299 0.91300 0.96836 0.87508 1.46460 1.60284 1.06030 1.22569 1.19383 1.22187 0.88748 1.05398 0.90361 1.25556 1.02278 0.98576 0.99272 1.70001 1.47639 1.15699 1.26611 0.85078 0.77729 0.78996 0.77933 1.19269 1.22420 1.21348 1.17217 0.86164 0.82258 0.77764 1.90833 1.14391 1.86583 1.50202 1.26696 0.95486 0.95305 1.07064 1.65563 1.39039 0.98086 1.11853 1.20317 0.89330 0.95167 1.08345 1.21482 1.02869 0.87623 0.93064 1.22283 0.92488 1.02799 0.99462 1.23980 0.97551 0.91341 0.88985 1.67361 1.34603 1.01664 1.14772 1.26119 0.93303 1.02928 1.04383 1.85238 1.03474 0.93293 1.69295 0.88432 0.85859 0.89933 0.87424 0.92287 0.90463 0.88116 0.97515 0.92697 0.94285 0.82102 0.78625 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 8.62 127.77 1.10 1.92 16 2 N -0.58 -16.21 2.79 -850.26 -2.37 -18.58 16 3 C 0.14 4.71 5.23 86.38 0.45 5.16 16 4 C 0.13 5.21 4.53 45.09 0.20 5.41 16 5 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.12 -4.34 7.31 31.25 0.23 -4.11 16 7 C 0.15 6.93 7.65 86.43 0.66 7.59 16 8 N -0.63 -32.15 3.58 -690.91 -2.48 -34.62 16 9 C -0.23 -12.87 10.51 84.03 0.88 -11.98 16 10 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 11 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 12 N -0.95 -57.22 11.32 21.65 0.25 -56.98 16 13 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 17 C 0.58 19.37 7.65 86.78 0.66 20.03 16 18 O -0.54 -23.26 16.72 -3.86 -0.06 -23.32 16 19 C 0.04 1.09 7.18 87.65 0.63 1.72 16 20 N -0.43 -13.19 10.46 -180.89 -1.89 -15.09 16 21 C -0.01 -0.14 6.95 40.30 0.28 0.14 16 22 C -0.02 -0.35 10.18 22.71 0.23 -0.12 16 23 C -0.15 -1.20 10.00 22.00 0.22 -0.98 16 24 C 0.15 1.52 11.19 84.89 0.95 2.47 16 25 N -0.47 -8.80 10.38 -190.60 -1.98 -10.78 16 26 C -0.02 -0.51 7.72 85.03 0.66 0.15 16 27 S 0.23 4.61 18.16 -56.49 -1.03 3.58 16 28 H 0.10 1.23 7.73 -2.39 -0.02 1.21 16 29 H 0.12 1.78 6.67 -2.39 -0.02 1.76 16 30 H 0.08 1.30 4.64 -20.52 -0.10 1.21 16 31 H 0.11 3.43 8.03 -2.39 -0.02 3.41 16 32 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 33 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.10 3.00 6.95 -2.39 -0.02 2.98 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.05 2.87 6.97 -2.39 -0.02 2.85 16 37 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.20 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.22 0.13 8.06 -2.91 -0.02 0.11 16 Total: -1.00 -82.62 347.84 1.09 -81.53 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.00 Total: 1.82 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 7.63 Total: 24.22 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -8.47 Total: -136.05 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.03 Total: 3.58 kcal Total: -82.62 1.09 -81.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.303 kcal (2) G-P(sol) polarization free energy of solvation -82.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds