Wall clock time and date at job start Sat Apr 11 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48505 * 109.46985 * 274.37765 * 3 2 1 5 5 H 1.48499 * 109.47438 * 34.37919 * 3 2 1 6 6 H 1.48498 * 109.46840 * 154.38156 * 3 2 1 7 7 C 1.37874 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99650 * 4.65026 * 7 2 1 9 9 C 1.50693 * 120.00078 * 184.65215 * 7 2 1 10 10 C 1.52999 * 115.55047 * 84.93977 * 9 7 2 11 11 N 1.46499 * 109.47228 * 39.64053 * 10 9 7 12 12 S 1.65598 * 120.00238 * 163.64572 * 11 10 9 13 13 O 1.42102 * 106.40494 * 177.09628 * 12 11 10 14 14 O 1.42102 * 106.40037 * 310.01363 * 12 11 10 15 15 N 1.65597 * 107.22052 * 63.55225 * 12 11 10 16 16 C 1.46922 * 120.63182 * 269.72195 * 15 12 11 17 17 C 1.53630 * 108.54161 * 126.36724 * 16 15 12 18 18 C 1.53041 * 109.24087 * 54.85978 * 17 16 15 19 19 C 1.50697 * 109.45993 * 178.49019 * 18 17 16 20 20 O 1.20826 * 120.00102 * 120.06624 * 19 18 17 21 21 O 1.34230 * 120.00184 * 300.06670 * 19 18 17 22 22 C 1.53047 * 109.53693 * 298.50949 * 18 17 16 23 23 C 1.46923 * 120.62803 * 90.00270 * 15 12 11 24 24 C 1.53002 * 117.51872 * 230.63935 * 9 7 2 25 25 C 1.53003 * 117.49836 * 299.27027 * 9 7 2 26 26 H 0.97010 * 119.99450 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47316 * 279.63923 * 10 9 7 28 28 H 1.09002 * 109.47306 * 159.64005 * 10 9 7 29 29 H 0.97005 * 119.99921 * 343.36570 * 11 10 9 30 30 H 1.09003 * 109.58860 * 246.19653 * 16 15 12 31 31 H 1.08993 * 109.58830 * 6.62904 * 16 15 12 32 32 H 1.08994 * 109.63486 * 294.86676 * 17 16 15 33 33 H 1.09005 * 109.43112 * 174.72567 * 17 16 15 34 34 H 1.08999 * 109.45255 * 58.52039 * 18 17 16 35 35 H 0.96696 * 117.00175 * 180.02562 * 21 19 18 36 36 H 1.08999 * 109.49567 * 301.41514 * 22 18 17 37 37 H 1.08996 * 109.52603 * 181.33625 * 22 18 17 38 38 H 1.09003 * 109.59038 * 353.37166 * 23 15 12 39 39 H 1.08997 * 109.58608 * 113.65736 * 23 15 12 40 40 H 1.08993 * 117.50208 * 214.96621 * 24 9 7 41 41 H 1.09004 * 117.49916 * 359.97438 * 24 9 7 42 42 H 1.09003 * 117.49747 * 359.97438 * 25 9 7 43 43 H 1.08997 * 117.49763 * 144.97024 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4041 2.0998 -1.3960 5 1 1.4960 2.6242 0.7906 6 1 3.5899 1.4151 0.6054 7 6 2.0045 -1.1940 -0.0005 8 1 1.4671 -2.1278 -0.0768 9 6 3.5078 -1.1963 0.1053 10 6 4.0693 -1.1320 1.5271 11 7 3.2549 -1.9685 2.4121 12 16 3.8388 -2.4184 3.8949 13 8 2.8015 -3.1549 4.5282 14 8 5.1400 -2.9439 3.6711 15 7 4.0396 -1.0352 4.7830 16 6 5.3151 -0.3066 4.7558 17 6 5.0333 1.1581 4.3880 18 6 4.0022 1.7332 5.3617 19 6 3.7496 3.1810 5.0282 20 8 2.6379 3.5467 4.7280 21 8 4.7597 4.0642 5.0647 22 6 2.6940 0.9474 5.2449 23 6 2.9475 -0.5166 5.6179 24 6 4.2878 -2.0142 -0.9260 25 6 4.2947 -0.4858 -0.9978 26 1 -0.4850 0.8402 -0.0004 27 1 4.0474 -0.1010 1.8801 28 1 5.0971 -1.4948 1.5286 29 1 2.3719 -2.2555 2.1311 30 1 5.7850 -0.3556 5.7381 31 1 5.9743 -0.7516 4.0105 32 1 4.6436 1.2120 3.3715 33 1 5.9571 1.7330 4.4549 34 1 4.3823 1.6561 6.3803 35 1 4.5489 4.9816 4.8433 36 1 2.3263 1.0033 4.2203 37 1 1.9523 1.3721 5.9213 38 1 2.0439 -1.1003 5.4417 39 1 3.2273 -0.5848 6.6692 40 1 5.2010 -2.5064 -0.5916 41 1 3.7137 -2.5512 -1.6811 42 1 3.7251 -0.0172 -1.8004 43 1 5.2122 0.0277 -0.7106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404071620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:26 Heat of formation + Delta-G solvation = -147.162728 kcal Electronic energy + Delta-G solvation = -28774.872964 eV Core-core repulsion = 24754.386022 eV Total energy + Delta-G solvation = -4020.486943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62955 -38.25488 -37.46024 -36.90624 -36.24763 -35.53014 -33.37802 -32.85951 -32.19814 -31.23461 -26.21820 -26.03195 -25.03744 -23.56876 -22.24464 -21.70807 -20.44536 -19.31388 -18.86936 -18.17498 -17.83719 -16.99947 -16.73086 -16.50626 -15.86073 -15.67667 -15.12624 -14.92711 -14.44691 -14.20812 -13.89650 -13.71735 -13.61020 -13.49231 -13.07592 -12.78002 -12.62893 -12.56241 -12.36790 -11.79934 -11.76362 -11.66969 -11.63767 -11.52133 -11.36260 -11.15300 -10.91099 -10.88851 -10.79764 -10.53424 -10.47814 -10.18612 -9.58243 -9.30179 -9.14286 -8.96590 -8.56869 -8.43151 -6.21008 -4.25617 0.92477 2.08031 2.85872 3.13224 3.21928 3.32677 3.35679 3.88889 4.33627 4.37721 4.46601 4.60175 4.72863 4.84432 4.94996 4.99641 5.08881 5.17092 5.21032 5.44325 5.48602 5.57086 5.60122 5.64539 5.72789 5.84033 5.92505 6.03270 6.03598 6.07987 6.19829 6.28099 6.36574 6.42776 6.52575 6.61920 6.68723 7.05491 7.11433 7.63121 7.75418 7.83235 8.39918 8.81621 9.42203 10.89647 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.006828 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.472940 B = 4099.579156 C = 5667.891600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.005 4.005 10 C 0.155 3.845 11 N -1.100 6.100 12 S 2.783 3.217 13 O -0.984 6.984 14 O -0.986 6.986 15 N -1.011 6.011 16 C 0.125 3.875 17 C -0.133 4.133 18 C -0.073 4.073 19 C 0.478 3.522 20 O -0.507 6.507 21 O -0.518 6.518 22 C -0.126 4.126 23 C 0.128 3.872 24 C -0.179 4.179 25 C -0.198 4.198 26 H 0.266 0.734 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.429 0.571 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 5.054 11.831 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.703 3.297 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.008 4.008 10 C 0.028 3.972 11 N -0.866 5.866 12 S 2.791 3.209 13 O -0.968 6.968 14 O -0.970 6.970 15 N -0.850 5.850 16 C -0.001 4.001 17 C -0.172 4.172 18 C -0.092 4.092 19 C 0.320 3.680 20 O -0.394 6.394 21 O -0.330 6.330 22 C -0.165 4.165 23 C 0.002 3.998 24 C -0.216 4.216 25 C -0.236 4.236 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.269 0.731 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.267 0.733 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.203 3.996 12.212 17.047 hybrid contribution -0.280 2.134 -0.578 2.228 sum 10.922 6.129 11.634 17.094 Atomic orbital electron populations 1.69897 1.06344 1.27295 1.48987 1.24966 0.94511 0.98989 0.93566 0.86922 0.80805 0.83643 0.78295 1.20691 1.21924 1.18039 1.20168 0.86497 0.94577 1.51595 0.90176 1.19510 0.94799 1.00253 0.86207 1.20879 0.91690 0.92608 0.91986 1.55611 1.31074 1.67374 1.32558 1.01842 0.73250 0.72925 0.72852 1.93591 1.58304 1.69571 1.75342 1.93573 1.41032 1.76599 1.85774 1.58296 1.19982 1.45929 1.60825 1.21463 0.84704 0.90886 1.03017 1.22099 0.98835 0.96609 0.99657 1.20992 0.99255 0.86529 1.02429 1.23606 0.82032 0.89175 0.73183 1.90768 1.24893 1.80214 1.43504 1.84520 1.42274 1.23708 1.82528 1.21919 0.95081 0.94447 1.05023 1.21367 0.89928 0.93930 0.94560 1.22912 1.01386 0.92892 1.04406 1.22974 1.01635 0.94976 1.04048 0.92408 0.93043 0.92688 0.73142 0.90640 0.88595 0.90189 0.89308 0.87142 0.73327 0.89605 0.89701 0.88306 0.90921 0.90689 0.89493 0.89449 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 20.68 25.18 -169.99 -4.28 16.40 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -5.50 5.25 56.52 0.30 -5.21 16 7 C -0.49 -12.53 7.89 -34.44 -0.27 -12.80 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C -0.01 -0.11 1.19 -155.66 -0.18 -0.30 16 10 C 0.16 2.92 6.16 -4.04 -0.02 2.89 16 11 N -1.10 -20.27 5.96 -10.61 -0.06 -20.33 16 12 S 2.78 46.20 6.13 -107.50 -0.66 45.54 16 13 O -0.98 -18.58 16.85 -57.17 -0.96 -19.55 16 14 O -0.99 -17.98 16.35 -57.17 -0.93 -18.91 16 15 N -1.01 -13.16 3.34 -113.27 -0.38 -13.54 16 16 C 0.13 1.32 6.41 -3.48 -0.02 1.30 16 17 C -0.13 -1.38 5.31 -26.38 -0.14 -1.52 16 18 C -0.07 -0.76 2.59 -91.73 -0.24 -0.99 16 19 C 0.48 5.79 7.63 36.00 0.27 6.07 16 20 O -0.51 -8.16 16.74 -18.75 -0.31 -8.47 16 21 O -0.52 -4.74 13.30 -39.26 -0.52 -5.27 16 22 C -0.13 -1.52 4.65 -26.61 -0.12 -1.64 16 23 C 0.13 1.48 6.37 -3.71 -0.02 1.45 16 24 C -0.18 -3.45 9.88 -26.73 -0.26 -3.72 16 25 C -0.20 -3.93 7.34 -26.73 -0.20 -4.13 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.05 0.94 5.42 -51.93 -0.28 0.66 16 28 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 29 H 0.43 8.57 7.36 -34.47 -0.25 8.32 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.05 7.12 -51.93 -0.37 0.68 16 32 H 0.08 1.01 6.91 -51.93 -0.36 0.66 16 33 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.41 2.24 9.10 45.56 0.41 2.65 16 36 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.10 1.24 7.13 -51.93 -0.37 0.87 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.09 1.83 7.12 -51.93 -0.37 1.46 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -34.17 355.32 -8.74 -42.91 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.44 Total: 11.98 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.31 Total: -11.25 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.33 Total: -58.74 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -2.73 Total: -52.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.28 Total: 16.40 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -0.66 Total: 45.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.17 -8.74 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.257 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds