Wall clock time and date at job start Sat Apr 11 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48505 * 109.46985 * 274.37765 * 3 2 1 5 5 H 1.48499 * 109.47438 * 34.37919 * 3 2 1 6 6 H 1.48498 * 109.46840 * 154.38156 * 3 2 1 7 7 C 1.37874 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99650 * 4.65026 * 7 2 1 9 9 C 1.50693 * 120.00078 * 184.65215 * 7 2 1 10 10 C 1.52999 * 115.55047 * 84.93977 * 9 7 2 11 11 N 1.46499 * 109.47228 * 39.64053 * 10 9 7 12 12 S 1.65598 * 120.00238 * 163.64572 * 11 10 9 13 13 O 1.42102 * 106.40494 * 177.09628 * 12 11 10 14 14 O 1.42102 * 106.40037 * 310.01363 * 12 11 10 15 15 N 1.65597 * 107.22052 * 63.55225 * 12 11 10 16 16 C 1.46922 * 120.63182 * 269.72195 * 15 12 11 17 17 C 1.53630 * 108.54161 * 126.36724 * 16 15 12 18 18 C 1.53041 * 109.24087 * 54.85978 * 17 16 15 19 19 C 1.50697 * 109.45993 * 178.49019 * 18 17 16 20 20 O 1.20826 * 120.00102 * 120.06624 * 19 18 17 21 21 O 1.34230 * 120.00184 * 300.06670 * 19 18 17 22 22 C 1.53047 * 109.53693 * 298.50949 * 18 17 16 23 23 C 1.46923 * 120.62803 * 90.00270 * 15 12 11 24 24 C 1.53002 * 117.51872 * 230.63935 * 9 7 2 25 25 C 1.53003 * 117.49836 * 299.27027 * 9 7 2 26 26 H 0.97010 * 119.99450 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47316 * 279.63923 * 10 9 7 28 28 H 1.09002 * 109.47306 * 159.64005 * 10 9 7 29 29 H 0.97005 * 119.99921 * 343.36570 * 11 10 9 30 30 H 1.09003 * 109.58860 * 246.19653 * 16 15 12 31 31 H 1.08993 * 109.58830 * 6.62904 * 16 15 12 32 32 H 1.08994 * 109.63486 * 294.86676 * 17 16 15 33 33 H 1.09005 * 109.43112 * 174.72567 * 17 16 15 34 34 H 1.08999 * 109.45255 * 58.52039 * 18 17 16 35 35 H 0.96696 * 117.00175 * 180.02562 * 21 19 18 36 36 H 1.08999 * 109.49567 * 301.41514 * 22 18 17 37 37 H 1.08996 * 109.52603 * 181.33625 * 22 18 17 38 38 H 1.09003 * 109.59038 * 353.37166 * 23 15 12 39 39 H 1.08997 * 109.58608 * 113.65736 * 23 15 12 40 40 H 1.08993 * 117.50208 * 214.96621 * 24 9 7 41 41 H 1.09004 * 117.49916 * 359.97438 * 24 9 7 42 42 H 1.09003 * 117.49747 * 359.97438 * 25 9 7 43 43 H 1.08997 * 117.49763 * 144.97024 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4041 2.0998 -1.3960 5 1 1.4960 2.6242 0.7906 6 1 3.5899 1.4151 0.6054 7 6 2.0045 -1.1940 -0.0005 8 1 1.4671 -2.1278 -0.0768 9 6 3.5078 -1.1963 0.1053 10 6 4.0693 -1.1320 1.5271 11 7 3.2549 -1.9685 2.4121 12 16 3.8388 -2.4184 3.8949 13 8 2.8015 -3.1549 4.5282 14 8 5.1400 -2.9439 3.6711 15 7 4.0396 -1.0352 4.7830 16 6 5.3151 -0.3066 4.7558 17 6 5.0333 1.1581 4.3880 18 6 4.0022 1.7332 5.3617 19 6 3.7496 3.1810 5.0282 20 8 2.6379 3.5467 4.7280 21 8 4.7597 4.0642 5.0647 22 6 2.6940 0.9474 5.2449 23 6 2.9475 -0.5166 5.6179 24 6 4.2878 -2.0142 -0.9260 25 6 4.2947 -0.4858 -0.9978 26 1 -0.4850 0.8402 -0.0004 27 1 4.0474 -0.1010 1.8801 28 1 5.0971 -1.4948 1.5286 29 1 2.3719 -2.2555 2.1311 30 1 5.7850 -0.3556 5.7381 31 1 5.9743 -0.7516 4.0105 32 1 4.6436 1.2120 3.3715 33 1 5.9571 1.7330 4.4549 34 1 4.3823 1.6561 6.3803 35 1 4.5489 4.9816 4.8433 36 1 2.3263 1.0033 4.2203 37 1 1.9523 1.3721 5.9213 38 1 2.0439 -1.1003 5.4417 39 1 3.2273 -0.5848 6.6692 40 1 5.2010 -2.5064 -0.5916 41 1 3.7137 -2.5512 -1.6811 42 1 3.7251 -0.0172 -1.8004 43 1 5.2122 0.0277 -0.7106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404071620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:25 Heat of formation + Delta-G solvation = -174.932569 kcal Electronic energy + Delta-G solvation = -28776.077155 eV Core-core repulsion = 24754.386022 eV Total energy + Delta-G solvation = -4021.691133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.53047 -39.21386 -39.01540 -38.31342 -37.12407 -36.92768 -34.85407 -34.23790 -33.80246 -32.10884 -28.03267 -26.97217 -26.70014 -24.45101 -23.30827 -23.10839 -21.44773 -20.99304 -20.03735 -19.08106 -18.98405 -18.49182 -18.19964 -17.58733 -17.22348 -16.82889 -16.63423 -16.21566 -15.61793 -15.37279 -15.00520 -14.87961 -14.81406 -14.64506 -14.52156 -14.34561 -14.28996 -13.58285 -13.46984 -13.25801 -13.17634 -12.98770 -12.95371 -12.77069 -12.63137 -12.52081 -12.24892 -12.11313 -11.93962 -11.76791 -11.66921 -11.46746 -11.36911 -11.05174 -10.77751 -10.41132 -10.06859 -9.98845 -8.29619 -6.35916 -0.36169 1.18537 1.31711 1.36723 1.46439 1.92141 2.10095 2.35292 2.57777 3.06889 3.20892 3.36862 3.55153 3.63952 3.91476 4.01745 4.06104 4.09283 4.33419 4.38017 4.41018 4.43014 4.51533 4.63995 4.66424 4.72562 4.76527 4.81039 4.89976 4.90719 4.98689 5.13273 5.14712 5.20668 5.30874 5.50905 5.53963 5.60939 5.63852 5.70537 6.19530 6.36488 6.73787 6.97435 7.34424 8.84445 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.006828 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.472940 B = 4099.579156 C = 5667.891600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.031 3.969 3 Si 0.926 3.074 4 H -0.278 1.278 5 H -0.313 1.313 6 H -0.217 1.217 7 C -0.477 4.477 8 H 0.038 0.962 9 C -0.036 4.036 10 C 0.159 3.841 11 N -1.113 6.113 12 S 2.800 3.200 13 O -1.011 7.011 14 O -1.000 7.000 15 N -1.006 6.006 16 C 0.118 3.882 17 C -0.129 4.129 18 C -0.071 4.071 19 C 0.482 3.518 20 O -0.558 6.558 21 O -0.506 6.506 22 C -0.124 4.124 23 C 0.126 3.874 24 C -0.167 4.167 25 C -0.190 4.190 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.418 0.582 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.425 0.575 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.204 6.124 13.498 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.167 4.167 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.241 1.241 6 H -0.140 1.140 7 C -0.514 4.514 8 H 0.056 0.944 9 C -0.038 4.038 10 C 0.033 3.967 11 N -0.876 5.876 12 S 2.808 3.192 13 O -0.996 6.996 14 O -0.983 6.983 15 N -0.848 5.848 16 C -0.007 4.007 17 C -0.168 4.168 18 C -0.090 4.090 19 C 0.326 3.674 20 O -0.448 6.448 21 O -0.319 6.319 22 C -0.163 4.163 23 C 0.001 3.999 24 C -0.204 4.204 25 C -0.228 4.228 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.255 0.745 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.286 0.714 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.247 5.061 13.865 21.221 hybrid contribution -1.512 1.760 -1.077 2.558 sum 13.735 6.821 12.787 19.967 Atomic orbital electron populations 1.70044 1.08226 1.27723 1.52086 1.25678 0.94956 1.02298 0.93794 0.86104 0.81273 0.79215 0.78196 1.20370 1.24100 1.13966 1.20276 0.89111 0.92619 1.49436 0.94352 1.19519 0.92446 1.03319 0.88504 1.20878 0.92630 0.93242 0.89967 1.55712 1.30472 1.67612 1.33784 1.01213 0.72304 0.73354 0.72298 1.93551 1.59358 1.71014 1.75659 1.93544 1.41256 1.77531 1.85982 1.58055 1.21439 1.45295 1.59979 1.21808 0.83301 0.90336 1.05221 1.22101 0.99785 0.96914 0.98044 1.21072 0.98146 0.85083 1.04673 1.23934 0.81547 0.90083 0.71811 1.90765 1.26968 1.81142 1.45969 1.84475 1.40921 1.24745 1.81788 1.21843 0.96551 0.95292 1.02642 1.21525 0.89092 0.93022 0.96251 1.22959 1.01700 0.92975 1.02804 1.23039 1.02106 0.95455 1.02212 0.92872 0.92541 0.90218 0.74520 0.86893 0.88648 0.92820 0.86407 0.83146 0.71412 0.93729 0.89184 0.90115 0.86980 0.87781 0.90575 0.90881 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.93 42.96 25.18 68.60 1.73 44.69 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.22 -8.60 5.25 99.48 0.52 -8.08 16 7 C -0.48 -25.07 7.89 25.60 0.20 -24.86 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C -0.04 -1.49 1.19 -52.93 -0.06 -1.55 16 10 C 0.16 5.68 6.16 86.38 0.53 6.21 16 11 N -1.11 -40.84 5.96 -187.50 -1.12 -41.96 16 12 S 2.80 89.92 6.13 -56.49 -0.35 89.58 16 13 O -1.01 -38.24 16.85 -128.00 -2.16 -40.39 16 14 O -1.00 -34.30 16.35 -128.00 -2.09 -36.39 16 15 N -1.01 -23.77 3.34 -512.29 -1.71 -25.48 16 16 C 0.12 1.99 6.41 86.51 0.55 2.55 16 17 C -0.13 -2.18 5.31 30.82 0.16 -2.02 16 18 C -0.07 -1.24 2.59 -11.51 -0.03 -1.27 16 19 C 0.48 10.56 7.63 71.24 0.54 11.10 16 20 O -0.56 -17.67 16.74 21.96 0.37 -17.30 16 21 O -0.51 -7.53 13.30 -51.41 -0.68 -8.22 16 22 C -0.12 -2.85 4.65 30.67 0.14 -2.71 16 23 C 0.13 2.68 6.37 86.36 0.55 3.23 16 24 C -0.17 -6.10 9.88 30.60 0.30 -5.80 16 25 C -0.19 -6.99 7.34 30.60 0.22 -6.77 16 26 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 27 H 0.06 1.94 5.42 -2.39 -0.01 1.92 16 28 H 0.08 2.45 7.56 -2.39 -0.02 2.43 16 29 H 0.42 17.40 7.36 -96.74 -0.71 16.69 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.68 7.12 -2.39 -0.02 1.67 16 32 H 0.05 1.21 6.91 -2.39 -0.02 1.19 16 33 H 0.12 1.34 8.08 -2.38 -0.02 1.32 16 34 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 3.42 9.10 -74.06 -0.67 2.75 16 36 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 37 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 38 H 0.08 2.02 7.13 -2.39 -0.02 2.00 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 3.21 8.08 -2.39 -0.02 3.19 16 41 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.07 2.91 7.12 -2.39 -0.02 2.89 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -77.88 355.32 -2.65 -80.52 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.52 Total: 31.52 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.59 Total: -19.69 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -2.53 Total: -124.32 kcal Atomic # 8 Polarization: -97.74 SS G_CDS: -4.57 Total: -102.30 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.73 Total: 44.69 kcal Atomic # 16 Polarization: 89.92 SS G_CDS: -0.35 Total: 89.58 kcal Total: -77.88 -2.65 -80.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.409 kcal (2) G-P(sol) polarization free energy of solvation -77.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds