Wall clock time and date at job start Sat Apr 11 2020 03:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48500 * 109.46909 * 271.86315 * 3 2 1 5 5 H 1.48501 * 109.47217 * 31.86024 * 3 2 1 6 6 H 1.48499 * 109.47362 * 151.86430 * 3 2 1 7 7 C 1.38817 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99930 * 338.68637 * 7 2 1 9 9 N 1.36932 * 119.99883 * 158.68074 * 7 2 1 10 10 C 1.47152 * 120.98220 * 153.81486 * 9 7 2 11 11 C 1.53299 * 108.38567 * 129.49034 * 10 9 7 12 12 O 1.42964 * 109.22308 * 52.30098 * 11 10 9 13 13 C 1.42976 * 114.20201 * 297.43965 * 12 11 10 14 14 H 1.08998 * 109.47999 * 302.62009 * 13 12 11 15 15 C 1.53002 * 109.54610 * 182.46297 * 13 12 11 16 16 N 1.46497 * 109.47050 * 65.23985 * 15 13 12 17 17 C 1.34771 * 120.00085 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99920 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.27994 * 29.29710 * 19 17 16 21 21 C 1.54163 * 110.31965 * 151.41659 * 19 17 16 22 22 C 1.53871 * 108.70528 * 146.81371 * 21 19 17 23 23 C 1.55055 * 106.62162 * 312.81651 * 22 21 19 24 24 S 1.82917 * 110.31969 * 267.18669 * 19 17 16 25 25 O 1.42107 * 109.35377 * 352.37264 * 24 19 17 26 26 O 1.42099 * 109.35471 * 125.57094 * 24 19 17 27 27 C 1.47152 * 120.98645 * 333.84068 * 9 7 2 28 28 H 0.97001 * 119.99519 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.68148 * 249.21105 * 10 9 7 30 30 H 1.09000 * 109.68400 * 9.76280 * 10 9 7 31 31 H 1.08998 * 109.51084 * 172.22327 * 11 10 9 32 32 H 1.09001 * 109.50963 * 292.32966 * 11 10 9 33 33 H 1.09000 * 109.46511 * 185.23693 * 15 13 12 34 34 H 1.08994 * 109.47201 * 305.23766 * 15 13 12 35 35 H 0.97001 * 119.99907 * 0.02562 * 16 15 13 36 36 H 1.08998 * 109.64598 * 266.66311 * 21 19 17 37 37 H 1.09005 * 109.64847 * 26.95734 * 21 19 17 38 38 H 1.08998 * 110.03425 * 72.10493 * 22 21 19 39 39 H 1.09000 * 110.02837 * 193.52758 * 22 21 19 40 40 H 1.09007 * 110.78885 * 160.70335 * 23 22 21 41 41 H 1.08991 * 110.79205 * 284.16555 * 23 22 21 42 42 H 1.09002 * 109.67623 * 350.23455 * 27 9 7 43 43 H 1.09004 * 109.68387 * 110.74678 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4583 2.0691 -1.3993 5 1 1.4680 2.6410 0.7390 6 1 3.5670 1.4291 0.6602 7 6 2.0103 -1.2022 0.0005 8 1 1.5256 -2.1054 0.3409 9 7 3.3093 -1.2430 -0.4306 10 6 4.2367 -2.2768 0.0558 11 6 4.9126 -2.9288 -1.1559 12 8 5.4760 -1.9098 -1.9855 13 6 4.5160 -1.0038 -2.5347 14 1 3.7763 -1.5619 -3.1087 15 6 5.2231 -0.0008 -3.4485 16 7 5.7872 -0.7051 -4.6026 17 6 6.4595 -0.0191 -5.5480 18 8 6.5978 1.1813 -5.4432 19 6 7.0393 -0.7435 -6.7356 20 1 6.4427 -1.6254 -6.9683 21 6 7.1048 0.1961 -7.9561 22 6 8.3393 -0.1730 -8.7972 23 6 9.5260 -0.3070 -7.8082 24 16 8.7741 -1.2195 -6.4042 25 8 9.1976 -0.6340 -5.1806 26 8 8.9271 -2.6168 -6.6128 27 6 3.8194 -0.2540 -1.3935 28 1 -0.4849 0.8401 -0.0004 29 1 4.9919 -1.8206 0.6959 30 1 3.6848 -3.0301 0.6178 31 1 5.7019 -3.5990 -0.8156 32 1 4.1741 -3.4946 -1.7239 33 1 4.5065 0.7449 -3.7927 34 1 6.0235 0.4919 -2.8967 35 1 5.6763 -1.6651 -4.6867 36 1 6.2033 0.0790 -8.5574 37 1 7.1865 1.2295 -7.6191 38 1 8.1721 -1.1201 -9.3101 39 1 8.5453 0.6137 -9.5230 40 1 10.3373 -0.8832 -8.2532 41 1 9.8767 0.6745 -7.4895 42 1 2.9909 0.3321 -1.7912 43 1 4.5320 0.4062 -0.8990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035608421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:34 Heat of formation + Delta-G solvation = -116.083682 kcal Electronic energy + Delta-G solvation = -27456.446588 eV Core-core repulsion = 23437.307334 eV Total energy + Delta-G solvation = -4019.139254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 6.33 seconds Orbital eigenvalues (eV) -40.12790 -38.80719 -37.44590 -36.64284 -36.22015 -35.08301 -34.57048 -31.81430 -31.61012 -30.54534 -27.87167 -26.48364 -25.20601 -23.63972 -22.25737 -21.68899 -21.01758 -20.08786 -19.21175 -17.93168 -17.57249 -17.08244 -16.79597 -16.22607 -16.05814 -15.70067 -15.53546 -15.02351 -14.58991 -14.47482 -14.38684 -14.34561 -14.09714 -13.64570 -13.47897 -12.98300 -12.76239 -12.70929 -12.48360 -12.41696 -12.38724 -12.29698 -11.95464 -11.78625 -11.49621 -11.24519 -11.14350 -10.87164 -10.75953 -10.46655 -10.36076 -10.20164 -9.88611 -9.58582 -9.46883 -9.18926 -8.62475 -7.09408 -6.04708 -3.41362 -0.50827 1.96856 2.46077 2.73380 3.15553 3.25634 3.44459 3.47732 3.62312 3.83284 3.97322 4.04139 4.17333 4.29500 4.44228 4.46333 4.68188 4.69944 4.95596 5.04694 5.17964 5.25132 5.27980 5.34405 5.35425 5.54630 5.58489 5.69707 5.77743 5.80780 5.96075 6.06260 6.13915 6.28818 6.40051 6.46087 6.67608 7.25625 7.54950 7.79102 7.93092 8.21472 8.79135 9.59921 9.96085 11.10694 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.003086 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.065528 B = 9072.193105 C = 9785.917788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.047 3.953 12 O -0.385 6.385 13 C 0.063 3.937 14 H 0.068 0.932 15 C 0.125 3.875 16 N -0.712 5.712 17 C 0.540 3.460 18 O -0.519 6.519 19 C -0.594 4.594 20 H 0.161 0.839 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.583 4.583 24 S 2.395 3.605 25 O -0.914 6.914 26 O -0.925 6.925 27 C 0.103 3.897 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.405 0.595 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.910 -2.861 -19.304 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.106 0.894 9 N -0.331 5.331 10 C -0.014 4.014 11 C -0.031 4.031 12 O -0.305 6.305 13 C 0.003 3.997 14 H 0.086 0.914 15 C 0.002 3.998 16 N -0.363 5.363 17 C 0.322 3.678 18 O -0.395 6.395 19 C -0.703 4.703 20 H 0.179 0.821 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.714 4.714 24 S 2.574 3.426 25 O -0.911 6.911 26 O -0.922 6.922 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.101 0.899 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.373 -2.462 -18.471 25.477 hybrid contribution -0.402 0.829 -0.523 1.060 sum 16.971 -1.633 -18.994 25.524 Atomic orbital electron populations 1.69837 1.05703 1.26761 1.52338 1.25262 0.95250 0.97622 0.99297 0.87041 0.80167 0.84607 0.77402 1.21326 1.22772 1.19431 1.18903 0.84846 0.95074 1.40361 0.89365 1.44353 1.09182 1.32371 1.47214 1.21649 0.93001 0.92481 0.94272 1.23077 0.97794 0.89554 0.92650 1.87837 1.33659 1.42656 1.66308 1.22896 0.90627 0.91459 0.94689 0.91375 1.21567 0.98761 0.94509 0.84955 1.45887 1.55353 1.11972 1.23070 1.18922 0.79214 0.87487 0.82167 1.90722 1.58168 1.13731 1.76839 1.30652 1.25660 1.10153 1.03863 0.82140 1.21985 0.99826 1.00320 0.92191 1.22236 0.90506 1.05007 0.98015 1.30657 1.08405 1.15399 1.16912 1.09315 0.78464 0.76664 0.78123 1.93683 1.78332 1.78812 1.40231 1.93645 1.83956 1.27892 1.86715 1.21906 0.97787 0.92592 0.90103 0.92585 0.94936 0.90908 0.89334 0.93238 0.89430 0.89866 0.76077 0.88465 0.87688 0.89297 0.87884 0.84196 0.83919 0.89851 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.97 55.49 0.78 -26.44 16 2 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 3 Si 0.88 22.10 24.32 -169.99 -4.13 17.97 16 4 H -0.29 -6.84 6.58 56.52 0.37 -6.47 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.76 6.66 56.52 0.38 -6.39 16 7 C -0.26 -7.24 10.09 -15.06 -0.15 -7.39 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.27 2.83 -171.82 -0.49 -14.75 16 10 C 0.11 2.17 6.73 -3.53 -0.02 2.14 16 11 C 0.05 0.77 6.99 37.31 0.26 1.03 16 12 O -0.39 -6.76 10.34 -35.23 -0.36 -7.12 16 13 C 0.06 1.11 2.81 -26.58 -0.07 1.04 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.13 1.99 5.35 -4.04 -0.02 1.96 16 16 N -0.71 -9.48 5.51 -60.30 -0.33 -9.81 16 17 C 0.54 7.04 6.37 -10.99 -0.07 6.97 16 18 O -0.52 -8.38 15.69 5.55 0.09 -8.29 16 19 C -0.59 -4.95 3.60 -27.27 -0.10 -5.05 16 20 H 0.16 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.10 -0.64 5.89 -25.67 -0.15 -0.79 16 22 C -0.12 -0.46 6.48 -25.19 -0.16 -0.63 16 23 C -0.58 -2.97 7.32 38.24 0.28 -2.69 16 24 S 2.39 22.33 5.96 -107.50 -0.64 21.69 16 25 O -0.91 -12.81 17.29 -57.71 -1.00 -13.81 16 26 O -0.93 -10.66 18.15 -57.71 -1.05 -11.71 16 27 C 0.10 2.21 3.69 -3.53 -0.01 2.20 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.35 7.96 -51.93 -0.41 0.94 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.80 6.87 -51.93 -0.36 0.44 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.92 4.69 -51.93 -0.24 1.68 16 43 H 0.04 0.84 6.94 -51.93 -0.36 0.48 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -37.86 353.92 -8.53 -46.39 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.41 Total: 1.15 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.32 Total: -0.58 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.04 Total: -51.01 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.32 Total: -40.94 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.97 kcal Atomic # 16 Polarization: 22.33 SS G_CDS: -0.64 Total: 21.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.86 -8.53 -46.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035608421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.694 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.33 seconds