Wall clock time and date at job start Sat Apr 11 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47605 * 2 1 4 4 C 1.53002 * 109.47140 * 120.00047 * 2 1 3 5 5 S 1.81400 * 109.47375 * 184.99800 * 4 2 1 6 6 C 1.81401 * 101.92288 * 179.97438 * 5 4 2 7 7 O 1.42102 * 108.57969 * 294.48944 * 5 4 2 8 8 O 1.42102 * 108.57461 * 65.51270 * 5 4 2 9 9 N 1.46501 * 109.47370 * 239.99963 * 2 1 3 10 10 C 1.34778 * 120.00189 * 84.99779 * 9 2 1 11 11 O 1.21345 * 119.99684 * 0.02562 * 10 9 2 12 12 C 1.49449 * 120.00001 * 180.02562 * 10 9 2 13 13 O 1.21347 * 120.00228 * 5.09493 * 12 10 9 14 14 N 1.34774 * 120.00048 * 185.09256 * 12 10 9 15 15 C 1.46502 * 120.00331 * 185.04195 * 14 12 10 16 16 C 1.52996 * 109.47063 * 184.77839 * 15 14 12 17 17 C 1.50698 * 115.55121 * 294.81386 * 16 15 14 18 18 H 1.08003 * 119.99766 * 95.20398 * 17 16 15 19 19 C 1.37874 * 119.99926 * 274.92660 * 17 16 15 20 20 N 1.31507 * 120.00401 * 355.41780 * 19 17 16 21 21 Si 1.86807 * 119.99884 * 175.41717 * 19 17 16 22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47138 * 120.00273 * 21 19 17 24 24 H 1.48505 * 109.47155 * 240.00161 * 21 19 17 25 25 C 1.53002 * 117.49906 * 80.48488 * 16 15 14 26 26 C 1.53002 * 117.49925 * 149.14404 * 16 15 14 27 27 H 1.09002 * 109.47230 * 300.00548 * 1 2 3 28 28 H 1.09000 * 109.47257 * 60.00033 * 1 2 3 29 29 H 1.09001 * 109.47605 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46941 * 304.99879 * 4 2 1 31 31 H 1.08996 * 109.46939 * 64.99760 * 4 2 1 32 32 H 1.09006 * 109.46538 * 60.00222 * 6 5 4 33 33 H 1.08995 * 109.46915 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47103 * 300.00563 * 6 5 4 35 35 H 0.97003 * 120.00317 * 265.00578 * 9 2 1 36 36 H 0.97000 * 119.99834 * 5.03638 * 14 12 10 37 37 H 1.08991 * 109.46950 * 64.77719 * 15 14 12 38 38 H 1.09002 * 109.46795 * 304.77265 * 15 14 12 39 39 H 0.97005 * 120.00851 * 184.99676 * 20 19 17 40 40 H 1.09007 * 117.49900 * 214.99948 * 25 16 15 41 41 H 1.08994 * 117.50021 * 0.02562 * 25 16 15 42 42 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 43 43 H 1.09000 * 117.49885 * 144.96827 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8478 -0.5934 1.3257 6 6 4.2233 -1.4980 2.8526 7 8 4.3991 -1.3080 0.2281 8 8 4.1976 0.7714 1.5110 9 7 2.0183 -0.6906 -1.1962 10 6 2.1471 -0.0183 -2.3572 11 8 1.8588 1.1592 -2.4115 12 6 2.6447 -0.7230 -3.5775 13 8 2.8450 -1.9195 -3.5480 14 7 2.8712 -0.0296 -4.7108 15 6 3.2525 -0.7346 -5.9371 16 6 3.5639 0.2842 -7.0352 17 6 2.3981 1.1211 -7.4950 18 1 2.2327 2.0985 -7.0663 19 6 1.5461 0.6414 -8.4671 20 7 1.8010 -0.5058 -9.0572 21 14 0.0294 1.6213 -8.9459 22 1 -0.0294 2.8676 -8.1407 23 1 0.0987 1.9673 -10.3884 24 1 -1.1865 0.8081 -8.6898 25 6 4.9436 0.9453 -7.0149 26 6 4.6120 -0.1022 -8.0807 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -0.2617 2.1369 31 1 1.7516 -1.7715 1.2056 32 1 3.8707 -2.5254 2.7621 33 1 5.3004 -1.4973 3.0197 34 1 3.7244 -1.0153 3.6929 35 1 2.2490 -1.6318 -1.1526 36 1 2.7816 0.9362 -4.7145 37 1 2.4312 -1.3752 -6.2582 38 1 4.1357 -1.3442 -5.7461 39 1 1.2430 -0.8087 -9.7906 40 1 5.0081 1.9855 -7.3341 41 1 5.6295 0.6540 -6.2195 42 1 5.0800 -1.0821 -7.9860 43 1 4.4581 0.2485 -9.1012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322763521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:31 Heat of formation + Delta-G solvation = -114.205339 kcal Electronic energy + Delta-G solvation = -26898.521419 eV Core-core repulsion = 22879.463616 eV Total energy + Delta-G solvation = -4019.057803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37650 -38.40413 -37.30280 -36.66630 -36.53055 -36.19879 -33.42154 -31.94318 -31.77461 -30.10109 -28.15117 -27.05135 -25.45595 -23.91690 -21.52661 -21.08298 -20.07495 -19.52601 -19.22156 -18.07701 -17.15675 -17.04507 -16.42135 -16.20362 -16.07442 -15.60965 -15.29776 -14.72505 -14.58335 -14.09475 -13.89861 -13.86015 -13.70058 -13.66725 -13.26964 -13.19660 -12.96392 -12.64896 -12.45639 -12.35828 -12.27797 -11.83640 -11.62935 -11.58468 -11.41509 -11.26180 -10.97480 -10.92319 -10.90419 -10.48584 -10.20426 -9.58104 -9.40745 -9.20779 -9.03757 -8.49689 -8.33845 -8.13641 -6.05915 -4.15276 -0.46396 1.78771 2.30777 2.57316 3.20877 3.27683 3.36700 3.41082 3.56632 3.62203 3.93820 3.98979 4.23577 4.32645 4.38425 4.55966 4.70479 4.89658 4.98649 5.02796 5.16523 5.21822 5.34468 5.39630 5.55973 5.88482 6.01237 6.14169 6.34068 6.45732 6.53423 6.72472 6.80135 7.01969 7.12943 7.19156 7.37174 7.53985 7.82906 7.84768 8.17043 8.35539 8.57768 8.87294 9.52209 11.01168 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002921 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.740891 B = 9582.528598 C =10360.987781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.109 0.891 4 C -0.628 4.628 5 S 2.415 3.585 6 C -0.659 4.659 7 O -0.920 6.920 8 O -0.933 6.933 9 N -0.714 5.714 10 C 0.515 3.485 11 O -0.513 6.513 12 C 0.497 3.503 13 O -0.534 6.534 14 N -0.667 5.667 15 C 0.160 3.840 16 C 0.020 3.980 17 C -0.499 4.499 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.210 4.210 26 C -0.139 4.139 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -3.341 24.797 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.126 0.874 4 C -0.756 4.756 5 S 2.595 3.405 6 C -0.808 4.808 7 O -0.917 6.917 8 O -0.930 6.930 9 N -0.372 5.372 10 C 0.296 3.704 11 O -0.387 6.387 12 C 0.276 3.724 13 O -0.413 6.413 14 N -0.317 5.317 15 C 0.037 3.963 16 C 0.019 3.981 17 C -0.537 4.537 18 H 0.081 0.919 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.718 3.282 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.247 4.247 26 C -0.177 4.177 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.256 0.744 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.491 -3.081 24.056 24.258 hybrid contribution -1.397 -0.083 0.351 1.443 sum -0.906 -3.165 24.407 24.628 Atomic orbital electron populations 1.22150 0.92978 1.03005 1.03522 1.20599 0.96635 0.97160 0.80768 0.87360 1.30739 1.27093 1.11040 1.06743 1.08164 0.78182 0.76515 0.77617 1.30318 1.12591 1.15413 1.22461 1.93672 1.75100 1.74392 1.48516 1.93628 1.81123 1.31923 1.86318 1.45991 1.66849 1.15555 1.08759 1.20566 0.78153 0.86918 0.84751 1.90760 1.47961 1.15290 1.84712 1.19790 0.80664 0.87436 0.84511 1.90718 1.51903 1.14360 1.84271 1.45876 1.64688 1.12289 1.08846 1.21212 0.99113 0.94447 0.81519 1.19038 0.88462 0.96153 0.94401 1.20436 1.08773 1.01980 1.22473 0.91932 1.24989 0.97495 0.94665 0.95961 1.69997 1.38946 1.19813 1.22441 0.86563 0.83171 0.80258 0.78212 1.19562 1.21051 1.20968 1.23039 1.01413 0.97902 1.02359 1.22472 1.03252 0.96356 0.95658 0.91047 0.90837 0.91733 0.83253 0.84046 0.85252 0.85134 0.85437 0.74425 0.75016 0.90806 0.93318 0.92942 0.90218 0.91559 0.91731 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.15 0.35 -0.95 16 2 C 0.15 1.46 2.57 -67.93 -0.17 1.29 16 3 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.63 -2.95 5.33 37.16 0.20 -2.75 16 5 S 2.41 17.68 5.28 -107.50 -0.57 17.11 16 6 C -0.66 -1.97 10.62 101.05 1.07 -0.90 16 7 O -0.92 -10.89 16.90 -57.83 -0.98 -11.87 16 8 O -0.93 -10.75 18.10 -57.83 -1.05 -11.79 16 9 N -0.71 -9.23 4.15 -54.24 -0.23 -9.46 16 10 C 0.51 8.80 7.85 -11.59 -0.09 8.71 16 11 O -0.51 -9.56 16.16 5.50 0.09 -9.48 16 12 C 0.50 9.82 7.88 -11.59 -0.09 9.73 16 13 O -0.53 -11.33 16.47 5.50 0.09 -11.24 16 14 N -0.67 -13.92 5.46 -60.73 -0.33 -14.25 16 15 C 0.16 3.65 5.53 -4.04 -0.02 3.62 16 16 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16 17 C -0.50 -13.13 8.59 -34.44 -0.30 -13.42 16 18 H 0.06 1.65 7.82 -52.48 -0.41 1.23 16 19 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 20 N -0.88 -24.28 12.65 55.43 0.70 -23.58 16 21 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.21 -4.51 9.96 -26.69 -0.27 -4.77 16 26 C -0.14 -3.22 9.14 -26.69 -0.24 -3.46 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.15 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.14 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 33 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.13 0.11 8.14 -51.92 -0.42 -0.32 16 35 H 0.42 4.95 7.69 -40.82 -0.31 4.64 16 36 H 0.41 8.50 7.84 -40.82 -0.32 8.18 16 37 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.45 383.03 -7.89 -44.34 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.49 Total: 9.32 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 0.11 Total: -0.79 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.14 Total: -47.29 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.84 Total: -44.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 17.68 SS G_CDS: -0.57 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.45 -7.89 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322763521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.869 kcal (2) G-P(sol) polarization free energy of solvation -36.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds